| SRR4457249 | 2nd_leaf | DAH4 | 0.64 | MC |
| SRR4457250 | 2nd_leaf | DAH4 | 0.52 | MC |
| SRR4457251 | 2nd_leaf | DAH4 | 0.44 | MC |
| SRR4457254 | 2nd_leaf | DAH12 | 0.26 | MC |
| SRR4457257 | 2nd_leaf | DAH20 | 0.81 | MC |
| SRR4457260 | 2nd_leaf | DAH28 | 0.58 | MC |
| SRR5560728 | caryopsis | wild_type | 0.40 | MC |
| SRR4947495 | root | control | 1.14 | MC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 0.34 | MC |
| SRR4104637 | crown | "Zn_deficiency,8_days_of_treatment" | 0.33 | MC |
| SRR4104644 | crown | "Zn_Efficient,8_days_of_treatment" | 0.39 | MC |
| SRR976168 | flag_leaf | wild_type | 1.96 | MC |
| SRR8060835 | leaf | wild_type | 2.01 | MC |
| SRR8060836 | leaf | wild_type | 2.98 | MC |
| SRR8060837 | leaf | wild_type | 0.91 | MC |
| SRR8240826 | leaf | wild_type | 1.49 | MC |
| SRR8240818 | leaf | wild_type | 1.99 | MC |
| SRR8240819 | leaf | wild_type | 2.38 | MC |
| SRR8240820 | leaf | wild_type | 1.55 | MC |
| SRR2922623 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 1.16 | MC |
| SRR2922624 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 0.60 | MC |
| SRR1952780 | leaf | 48_hrs_after_inoculation_with_BLS256 | 0.83 | MC |
| SRR1952782 | leaf | 48_hrs_after_inoculation_with_BLS279 | 1.72 | MC |
| SRR1952783 | leaf | 48_hrs_after_inoculation_with_BLS279 | 0.64 | MC |
| SRR1952785 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 1.09 | MC |
| SRR1952786 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 1.73 | MC |
| SRR1952787 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.60 | MC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.97 | MC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 1.14 | MC |
| SRR1952790 | leaf | 48_hrs_after_inoculation_with_L8 | 0.68 | MC |
| SRR1952791 | leaf | 48_hrs_after_inoculation_with_L8 | 1.17 | MC |
| SRR1952792 | leaf | 48_hrs_after_inoculation_with_L8 | 0.46 | MC |
| SRR1952794 | leaf | 48_hrs_after_inoculation_with_RS105 | 1.08 | MC |
| SRR1952795 | leaf | 48_hrs_after_inoculation_with_RS105 | 1.03 | MC |
| SRR1952796 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 1.89 | MC |
| SRR1952797 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 1.30 | MC |
| SRR1952798 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 2.16 | MC |
| SRR1952800 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 1.74 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 0.86 | MC |
| SRR1952803 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 1.20 | MC |
| SRR1952804 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 0.72 | MC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.56 | MC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 1.36 | MC |
| SRR1952807 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.77 | MC |
| SRR1952808 | leaf | 48_hrs_after_mock_inoculation | 0.89 | MC |
| SRR1952810 | leaf | 48_hrs_after_mock_inoculation | 1.65 | MC |
| SRR1761788 | leaf | "wild_type,drought,2" | 0.93 | MC |
| SRR1761790 | leaf | "wild_type,control,2" | 2.21 | MC |
| SRR1761791 | leaf | "wild_type,control,2" | 2.11 | MC |
| SRR1761780 | leaf | "wild_type,drought,1" | 0.93 | MC |
| SRR1761782 | leaf | "wild_type,control,1" | 2.21 | MC |
| SRR1761783 | leaf | "wild_type,control,1" | 2.11 | MC |
| SRR1761528 | leaf | drought | 0.93 | MC |
| SRR1761530 | leaf | control | 2.21 | MC |
| SRR1761531 | leaf | control | 2.11 | MC |
| SRR504365 | leaf | wt | 0.91 | MC |
| SRR6417968 | leaf | H2O_control | 0.45 | MC |
| SRR6417969 | leaf | H2O_control | 0.40 | MC |
| SRR3209769 | leaf | Watered;Long_Day | 2.21 | MC |
| SRR3209770 | leaf | Watered;Long_Day | 2.35 | MC |
| SRR3209773 | leaf | Watered;Short_Day | 0.92 | MC |
| SRR3209774 | leaf | Watered;Short_Day | 0.39 | MC |
| SRR3209775 | leaf | Drought;Short_Day | 2.14 | MC |
| SRR3209776 | leaf | Drought;Short_Day | 2.54 | MC |
| SRR3209778 | leaf | Drought;Long_Day | 3.24 | MC |
| SRR3209779 | leaf | Watered;Short_Day | 0.84 | MC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 3.04 | MC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 3.09 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 2.38 | MC |
| SRR1213693 | leaf | wt | 0.96 | MC |
| SRR6502085 | leaf | 100 mM NaCl | 0.89 | MC |
| SRR6502086 | leaf | 100 mM NaCl | 1.20 | MC |
| SRR6502087 | leaf | 100 mM NaCl | 1.05 | MC |
| SRR6502088 | leaf | control | 0.62 | MC |
| SRR6502089 | leaf | control | 1.23 | MC |
| SRR6502090 | leaf | control | 1.80 | MC |
| SRR6502097 | leaf | 100 mM NaCl | 2.41 | MC |
| SRR6502098 | leaf | 100 mM NaCl | 1.43 | MC |
| SRR6502099 | leaf | 100 mM NaCl | 3.33 | MC |
| SRR6502100 | leaf | control | 2.82 | MC |
| SRR6502101 | leaf | control | 2.92 | MC |
| SRR6502102 | leaf | control | 3.01 | MC |
| SRR5856929 | leaf | control | 0.26 | MC |
| SRR5856933 | leaf | control | 0.30 | MC |
| SRR6053392 | leaf | ethanol solvent (untreated control) | 6.63 | MC |
| SRR6053393 | leaf | ethanol solvent (untreated control) | 2.64 | MC |
| SRR6053394 | leaf | ethanol solvent (untreated control) | 5.34 | MC |
| SRR6053395 | leaf | gibberellic acid (GA) | 9.88 | MC |
| SRR6053396 | leaf | gibberellic acid (GA) | 5.71 | MC |
| SRR6053397 | leaf | gibberellic acid (GA) | 5.04 | MC |
| SRR6053398 | leaf | Paclobutrazol (PB) | 6.64 | MC |
| SRR6168973 | leaf | none (control) | 3.23 | MC |
| SRR6168974 | leaf | none (control) | 4.38 | MC |
| SRR6168975 | leaf | none (control) | 2.30 | MC |
| SRR6168978 | leaf | 0.5% Na2CO3 solution for 36h | 0.49 | MC |
| SRR6168980 | leaf | none (control) | 0.39 | MC |
| SRR8582890 | panicle | AM | 2.46 | MC |
| SRR8582891 | panicle | PM | 0.77 | MC |
| SRR8582893 | panicle | PM | 1.01 | MC |
| SRR4947496 | root | control | 2.62 | MC |
| SRR5126147 | root | "mock,1_day" | 0.52 | MC |
| SRR5126148 | root | "mock,1_day" | 0.87 | MC |
| SRR5126149 | root | "mock,1_day" | 1.52 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 1.69 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 1.19 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 1.03 | MC |
| SRR5126153 | root | "mock,7_days" | 0.99 | MC |
| SRR5126155 | root | "mock,7_days" | 0.41 | MC |
| SRR5126157 | root | "mock,7_days" | 0.65 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 0.54 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 0.81 | MC |
| SRR5126165 | root | "mock,14_days" | 1.44 | MC |
| SRR5126167 | root | "mock,14_days" | 0.79 | MC |
| SRR5126169 | root | "mock,14_days" | 1.81 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 0.58 | MC |
| SRR3472897 | root | nontransgenic_rice_plant | 0.31 | MC |
| SRR1213694 | root | wt | 1.09 | MC |
| SRR1213695 | root | wt | 0.39 | MC |
| SRR4947478 | root | control | 1.72 | MC |
| SRR4947479 | root | control | 1.80 | MC |
| SRR4947480 | root | control | 2.48 | MC |
| SRR4947481 | root | control | 0.55 | MC |
| SRR4947482 | root | Al | 0.72 | MC |
| SRR4947483 | root | Al | 2.82 | MC |
| SRR4947484 | root | Al | 3.63 | MC |
| SRR4947485 | root | Al | 1.61 | MC |
| SRR4947488 | root | control | 2.76 | MC |
| SRR4947489 | root | control | 2.14 | MC |
| SRR4947490 | root | Al | 1.76 | MC |
| SRR4947491 | root | Al | 2.98 | MC |
| SRR4947492 | root | Al | 2.17 | MC |
| SRR4947493 | root | Al | 1.88 | MC |
| SRR4947494 | root | control | 1.45 | MC |
| SRR4947497 | root | control | 2.35 | MC |
| SRR4947498 | root | Al | 3.03 | MC |
| SRR4947499 | root | Al | 2.31 | MC |
| SRR4947500 | root | Al | 1.84 | MC |
| SRR4947501 | root | Al | 2.61 | MC |
| SRR4947502 | root | control | 4.03 | MC |
| SRR4947503 | root | control | 1.54 | MC |
| SRR4947504 | root | control | 3.85 | MC |
| SRR4947505 | root | control | 4.19 | MC |
| SRR4947506 | root | Al | 2.42 | MC |
| SRR4947507 | root | Al | 2.68 | MC |
| SRR4947508 | root | Al | 1.11 | MC |
| SRR4947509 | root | Al | 1.69 | MC |
| SRR6502092 | root | 100 mM NaCl | 0.96 | MC |
| SRR6502093 | root | 100 mM NaCl | 0.47 | MC |
| SRR6502096 | root | control | 0.39 | MC |
| SRR6502104 | root | 100 mM NaCl | 0.37 | MC |
| SRR6502105 | root | 100 mM NaCl | 0.71 | MC |
| SRR6502107 | root | control | 0.28 | MC |
| SRR2154086 | seedling | wt | 2.90 | MC |
| SRR2154082 | seedling | wt | 2.69 | MC |
| SRR2154083 | seedling | wt | 0.94 | MC |
| SRR2154084 | seedling | wt | 1.94 | MC |
| SRR2154085 | seedling | wt | 2.13 | MC |
| SRR2154087 | seedling | wt | 2.43 | MC |
| SRR3098741 | seedling | wt | 0.86 | MC |
| SRR3098742 | seedling | wt | 2.74 | MC |
| SRR3098743 | seedling | wt | 1.60 | MC |
| SRR358791 | seedling | wt | 2.30 | MC |
| SRR358792 | seedling | wt | 1.24 | MC |
| SRR358793 | seedling | wt | 2.91 | MC |
| SRR358794 | seedling | wt | 2.52 | MC |
| SRR1288363 | shoot | "none,3_days_post_infection" | 3.15 | MC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 6.50 | MC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 9.26 | MC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 6.88 | MC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 4.06 | MC |
| SRR4841741 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 3.42 | MC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 4.44 | MC |
| SRR4841743 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 5.43 | MC |
| SRR3950244 | shoot | Drought_during_3_days;Fr13_inoculated | 1.98 | MC |
| SRR3950245 | shoot | Drought_during_3_days;Fr13_inoculated | 1.16 | MC |
| SRR3950246 | shoot | Drought_during_3_days;Fr13_inoculated | 1.24 | MC |
| SRR3950248 | shoot | No_DIS;Fr13_inoculated | 1.52 | MC |
| SRR3950255 | shoot | No_DIS;_mock_inoculated | 4.73 | MC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 2.85 | MC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 3.33 | MC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 3.00 | MC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 3.39 | MC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 1.72 | MC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 2.65 | MC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 2.08 | MC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 2.74 | MC |
| SRR5796954 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 0.61 | MC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 0.34 | MC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 1.40 | MC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 0.71 | MC |
| SRR5796958 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 2.68 | MC |
| SRR5796959 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 2.00 | MC |
| SRR1617553 | shoot_apical_meristem | no collect | 1.87 | MC |
| SRR1617558 | shoot_apical_meristem | no collect | 1.36 | MC |