| SRR4457258 | 2nd_leaf | DAH28 | 0.30 | MC |
| SRR3745125 | anther | wt | 1.09 | MC |
| SRR6320473 | carpel | wt | 3.02 | MC |
| SRR6320498 | carpel | wt | 3.77 | MC |
| SRR4947495 | root | control | 2.20 | MC |
| SRR7265400 | coleoptile | 2dA | 0.46 | MC |
| SRR7265405 | coleoptile | 2dN | 0.32 | MC |
| SRR4104637 | crown | "Zn_deficiency,8_days_of_treatment" | 0.60 | MC |
| SRR4104647 | crown | "Zn_Efficient,8_days_of_treatment" | 1.14 | MC |
| SRR4104640 | crown | "Zn_deficiency,8_days_of_treatment" | 0.81 | MC |
| SRR4104643 | crown | "Zn_Efficient,8_days_of_treatment" | 1.45 | MC |
| SRR4104644 | crown | "Zn_Efficient,8_days_of_treatment" | 0.97 | MC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 1.15 | MC |
| SRR4104646 | crown | "Zn_Efficient,8_days_of_treatment" | 1.09 | MC |
| SRR7265377 | embryo | 1hA | 0.41 | MC |
| SRR7265378 | embryo | 1hA | 0.27 | MC |
| SRR7265381 | embryo | 1hN | 0.28 | MC |
| SRR7265386 | embryo | 3hN | 0.34 | MC |
| SRR7265388 | embryo | 12hA | 0.67 | MC |
| SRR7265389 | embryo | 12hA | 0.65 | MC |
| SRR7265391 | embryo | 12hN | 1.43 | MC |
| SRR7265392 | embryo | 12hN | 0.65 | MC |
| SRR7265393 | embryo | 12hN | 1.03 | MC |
| SRR7265394 | embryo | 24hA | 1.13 | MC |
| SRR7265396 | embryo | 24hA | 0.80 | MC |
| SRR7265397 | embryo | 24hN | 0.60 | MC |
| SRR7265399 | embryo | 24hN | 1.14 | MC |
| SRR1213690 | flower | wt(flower buds) | 0.34 | MC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 0.42 | MC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 0.62 | MC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 0.54 | MC |
| SRR504365 | leaf | wt | 0.64 | MC |
| SRR8611901 | leaf | Non-inoculated | 0.58 | MC |
| SRR8611902 | leaf | Non-inoculated | 0.34 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 0.43 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 0.67 | MC |
| SRR5856927 | leaf | control | 0.42 | MC |
| SRR5856928 | leaf | control | 0.98 | MC |
| SRR5856929 | leaf | control | 0.79 | MC |
| SRR5856931 | leaf | salt | 0.16 | MC |
| SRR5856932 | leaf | salt | 0.26 | MC |
| SRR5856933 | leaf | control | 1.70 | MC |
| SRR5856934 | leaf | control | 1.24 | MC |
| SRR5856935 | leaf | control | 0.93 | MC |
| SRR5856936 | leaf | salt | 0.52 | MC |
| SRR5856937 | leaf | salt | 0.22 | MC |
| SRR5856938 | leaf | salt | 0.16 | MC |
| SRR6053392 | leaf | ethanol solvent (untreated control) | 4.13 | MC |
| SRR6053397 | leaf | gibberellic acid (GA) | 3.57 | MC |
| SRR6168976 | leaf | 0.5% Na2CO3 solution for 36h | 1.17 | MC |
| SRR6168978 | leaf | 0.5% Na2CO3 solution for 36h | 0.65 | MC |
| SRR6168982 | leaf | 0.5% Na2CO3 solution for 36h | 0.24 | MC |
| SRR5110429 | panicle | Dawn | 2.33 | MC |
| SRR5110430 | panicle | Dawn | 2.55 | MC |
| SRR5110431 | panicle | Dawn | 1.52 | MC |
| SRR5110432 | panicle | Dawn | 1.27 | MC |
| SRR5110433 | panicle | Dawn + 3.5h | 3.50 | MC |
| SRR5110434 | panicle | Dawn + 3.5h | 1.14 | MC |
| SRR5110435 | panicle | Dawn + 3.5h | 1.44 | MC |
| SRR5110436 | panicle | Dawn + 3.5h | 2.36 | MC |
| SRR5110437 | panicle | Dawn + 7h | 1.66 | MC |
| SRR5110438 | panicle | Dawn + 7h | 1.49 | MC |
| SRR5110439 | panicle | Dawn + 7h | 1.56 | MC |
| SRR5110440 | panicle | Dawn + 7h | 1.97 | MC |
| SRR5110442 | panicle | Dawn + 10.5h | 1.90 | MC |
| SRR5110443 | panicle | Dawn + 10.5h | 1.81 | MC |
| SRR5110444 | panicle | Dawn + 10.5h | 1.49 | MC |
| SRR5110445 | panicle | Dusk | 2.18 | MC |
| SRR5110446 | panicle | Dusk | 3.02 | MC |
| SRR5110447 | panicle | Dusk | 2.45 | MC |
| SRR5110448 | panicle | Dusk | 1.88 | MC |
| SRR5110449 | panicle | Dawn + 14h | 1.50 | MC |
| SRR5110451 | panicle | Dawn + 14h | 1.61 | MC |
| SRR5110453 | panicle | Dawn + 17.5h | 1.73 | MC |
| SRR5110454 | panicle | Dawn + 17.5h | 0.89 | MC |
| SRR5110455 | panicle | Dawn + 17.5h | 1.55 | MC |
| SRR5110456 | panicle | Dawn + 17.5h | 2.64 | MC |
| SRR5110457 | panicle | Dawn + 21h | 1.67 | MC |
| SRR5110458 | panicle | Dawn + 21h | 0.99 | MC |
| SRR5110459 | panicle | Dawn + 21h | 1.28 | MC |
| SRR5110460 | panicle | Dawn + 21h | 1.70 | MC |
| SRR1633182 | panicle | WT | 1.70 | MC |
| SRR1633185 | panicle | WT | 1.49 | MC |
| SRR5278375 | pistil | "Balilla,S1" | 0.26 | MC |
| SRR5278377 | pistil | "Balilla,S2" | 0.49 | MC |
| SRR5278378 | pistil | "Balilla,S3" | 1.17 | MC |
| SRR5278379 | pistil | "Balilla,S3" | 1.11 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 0.50 | MC |
| SRR3472900 | root | nontransgenic_rice_plant | 0.34 | MC |
| SRR4947478 | root | control | 0.71 | MC |
| SRR4947479 | root | control | 1.56 | MC |
| SRR4947482 | root | Al | 1.36 | MC |
| SRR4947483 | root | Al | 0.99 | MC |
| SRR4947487 | root | control | 2.34 | MC |
| SRR4947490 | root | Al | 1.71 | MC |
| SRR4947491 | root | Al | 1.84 | MC |
| SRR4947494 | root | control | 0.85 | MC |
| SRR4947498 | root | Al | 2.53 | MC |
| SRR4947499 | root | Al | 1.13 | MC |
| SRR4947501 | root | Al | 0.49 | MC |
| SRR4947502 | root | control | 1.58 | MC |
| SRR4947503 | root | control | 1.61 | MC |
| SRR4947506 | root | Al | 1.21 | MC |
| SRR4947507 | root | Al | 3.24 | MC |
| SRR6502096 | root | control | 0.55 | MC |
| SRR6502106 | root | control | 0.35 | MC |
| SRR1740435 | root_differentiation_zone | wt | 0.31 | MC |
| SRR1740431 | root_elongation_zone | wt | 0.52 | MC |
| SRR1740432 | root_elongation_zone | wt | 1.12 | MC |
| SRR1740433 | root_elongation_zone | wt | 1.46 | MC |
| SRR1740429 | root_meristematic_zone | wt | 1.10 | MC |
| SRR1740430 | root_meristematic_zone | wt | 1.31 | MC |
| SRR2154086 | seedling | wt | 0.44 | MC |
| SRR2154082 | seedling | wt | 2.99 | MC |
| SRR2154083 | seedling | wt | 3.38 | MC |
| SRR2154084 | seedling | wt | 2.96 | MC |
| SRR2154087 | seedling | wt | 0.32 | MC |
| SRR1944583 | seedling | no_treatment | 0.54 | MC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 1.77 | MC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 4.18 | MC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 5.60 | MC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 9.03 | MC |
| SRR4841741 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 2.59 | MC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 3.33 | MC |
| SRR5796954 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 0.98 | MC |
| SRR5052708 | shoot_apical_meristem | 0_days_after_shift | 3.22 | MC |
| SRR5052709 | shoot_apical_meristem | 0_days_after_shift | 3.31 | MC |
| SRR5052710 | shoot_apical_meristem | 0_days_after_shift | 4.74 | MC |
| SRR5052711 | shoot_apical_meristem | 4_days_after_shift | 3.27 | MC |
| SRR5052713 | shoot_apical_meristem | 4_days_after_shift | 4.63 | MC |
| SRR5052714 | shoot_apical_meristem | 4_days_after_shift | 3.75 | MC |
| SRR5052716 | shoot_apical_meristem | 8_days_after_shift | 2.86 | MC |
| SRR5052719 | shoot_apical_meristem | 8_days_after_shift | 4.19 | MC |
| SRR5052720 | shoot_apical_meristem | 8_days_after_shift | 4.02 | MC |
| SRR5052721 | shoot_apical_meristem | 12_days_after_shift | 4.88 | MC |
| SRR5052722 | shoot_apical_meristem | 12_days_after_shift | 4.08 | MC |
| SRR5052723 | shoot_apical_meristem | 12_days_after_shift | 3.49 | MC |
| SRR5052724 | shoot_apical_meristem | 0_days_after_shift | 3.50 | MC |
| SRR5052725 | shoot_apical_meristem | 0_days_after_shift | 3.79 | MC |
| SRR5052726 | shoot_apical_meristem | 0_days_after_shift | 2.77 | MC |
| SRR5052727 | shoot_apical_meristem | 4_days_after_shift | 2.97 | MC |
| SRR5052728 | shoot_apical_meristem | 4_days_after_shift | 3.69 | MC |
| SRR5052730 | shoot_apical_meristem | 4_days_after_shift | 3.91 | MC |
| SRR5052731 | shoot_apical_meristem | 8_days_after_shift | 2.58 | MC |
| SRR5052732 | shoot_apical_meristem | 8_days_after_shift | 3.67 | MC |
| SRR5052733 | shoot_apical_meristem | 8_days_after_shift | 5.01 | MC |
| SRR5052734 | shoot_apical_meristem | 12_days_after_shift | 4.18 | MC |
| SRR5052735 | shoot_apical_meristem | 12_days_after_shift | 2.04 | MC |
| SRR1617550 | shoot_apical_meristem | no collect | 1.08 | MC |
| SRR1617554 | shoot_apical_meristem | no collect | 1.14 | MC |
| SRR1617556 | shoot_apical_meristem | no collect | 1.08 | MC |
| SRR1617557 | shoot_apical_meristem | no collect | 1.88 | MC |
| SRR1617558 | shoot_apical_meristem | no collect | 1.28 | MC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 3.95 | MC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 3.69 | MC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 2.80 | MC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 0.57 | MC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 1.60 | MC |
| SRR7760291 | spikelet | control condition (29C) for 7 hrs | 1.46 | MC |
| SRR7760292 | spikelet | control condition (29C) for 7 hrs | 2.13 | MC |
| SRR7760293 | spikelet | control condition (29C) for 7 hrs | 0.94 | MC |
| SRR7760294 | spikelet | high temperature treatment (38C) for 7 hrs | 1.47 | MC |
| SRR7760295 | spikelet | high temperature treatment (38C) for 7 hrs | 2.06 | MC |
| SRR7760296 | spikelet | high temperature treatment (38C) for 7 hrs | 1.78 | MC |
| SRR7760297 | spikelet | control condition (29C) for 7 hrs | 1.90 | MC |
| SRR7760298 | spikelet | control condition (29C) for 7 hrs | 1.54 | MC |
| SRR7760299 | spikelet | control condition (29C) for 7 hrs | 1.29 | MC |
| SRR7760300 | spikelet | high temperature treatment (38C) for 7 hrs | 2.30 | MC |
| SRR7760301 | spikelet | high temperature treatment (38C) for 7 hrs | 1.60 | MC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 1.08 | MC |