| SRR358796 | callus | wt | 1.20 | MC |
| SRR5560727 | caryopsis | wild_type | 0.56 | MC |
| SRR5560729 | caryopsis | wild_type | 0.39 | MC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 2.50 | MC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 2.55 | MC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 1.86 | MC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 3.60 | MC |
| SRR7265400 | coleoptile | 2dA | 1.04 | MC |
| SRR7265401 | coleoptile | 2dA | 1.46 | MC |
| SRR7265402 | coleoptile | 2dA | 1.36 | MC |
| SRR7265403 | coleoptile | 2dN | 1.27 | MC |
| SRR7265404 | coleoptile | 2dN | 0.90 | MC |
| SRR7265405 | coleoptile | 2dN | 0.75 | MC |
| SRR7265408 | coleoptile | 3dA | 0.38 | MC |
| SRR7265409 | coleoptile | 3dN | 0.80 | MC |
| SRR7265410 | coleoptile | 3dN | 0.71 | MC |
| SRR7265411 | coleoptile | 3dN | 0.54 | MC |
| SRR7265413 | coleoptile | 4dA | 0.54 | MC |
| SRR7265415 | coleoptile | 4dN | 0.67 | MC |
| SRR7265416 | coleoptile | 4dN | 1.26 | MC |
| SRR7265417 | coleoptile | 4dN | 0.48 | MC |
| SRR7265420 | coleoptile | 3dN1dA | 0.41 | MC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 0.44 | MC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 0.96 | MC |
| SRR7265375 | embryo | dry seed 0 h | 0.25 | MC |
| SRR7265376 | embryo | 1hA | 0.47 | MC |
| SRR7265379 | embryo | 1hN | 0.33 | MC |
| SRR7265381 | embryo | 1hN | 0.35 | MC |
| SRR7265385 | embryo | 3hN | 0.45 | MC |
| SRR7265386 | embryo | 3hN | 0.30 | MC |
| SRR7265387 | embryo | 3hN | 0.47 | MC |
| SRR7265388 | embryo | 12hA | 1.42 | MC |
| SRR7265389 | embryo | 12hA | 1.17 | MC |
| SRR7265390 | embryo | 12hA | 2.08 | MC |
| SRR7265391 | embryo | 12hN | 1.03 | MC |
| SRR7265392 | embryo | 12hN | 1.08 | MC |
| SRR7265393 | embryo | 12hN | 1.41 | MC |
| SRR7265394 | embryo | 24hA | 0.53 | MC |
| SRR7265395 | embryo | 24hA | 0.97 | MC |
| SRR7265396 | embryo | 24hA | 1.53 | MC |
| SRR7265397 | embryo | 24hN | 1.47 | MC |
| SRR7265398 | embryo | 24hN | 1.30 | MC |
| SRR7265399 | embryo | 24hN | 1.50 | MC |
| SRR1213690 | flower | wt(flower buds) | 1.42 | MC |
| SRR1213691 | flower | wt | 1.64 | MC |
| SRR8060835 | leaf | wild_type | 0.93 | MC |
| SRR8060836 | leaf | wild_type | 1.40 | MC |
| SRR8060837 | leaf | wild_type | 1.71 | MC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 2.96 | MC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.19 | MC |
| SRR1952796 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 0.49 | MC |
| SRR1952799 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 0.93 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 0.21 | MC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 0.32 | MC |
| SRR1952810 | leaf | 48_hrs_after_mock_inoculation | 0.35 | MC |
| SRR504365 | leaf | wt | 0.68 | MC |
| SRR3209777 | leaf | Watered;Long_Day | 0.23 | MC |
| SRR8611900 | leaf | Non-inoculated | 1.42 | MC |
| SRR8611901 | leaf | Non-inoculated | 0.96 | MC |
| SRR8611902 | leaf | Non-inoculated | 1.37 | MC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 0.29 | MC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 0.61 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 2.45 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 3.26 | MC |
| SRR1213692 | leaf | wt | 1.33 | MC |
| SRR1213693 | leaf | wt | 0.56 | MC |
| SRR6502086 | leaf | 100 mM NaCl | 0.54 | MC |
| SRR6502087 | leaf | 100 mM NaCl | 0.77 | MC |
| SRR6502089 | leaf | control | 0.50 | MC |
| SRR6502090 | leaf | control | 0.59 | MC |
| SRR6502099 | leaf | 100 mM NaCl | 0.62 | MC |
| SRR6168981 | leaf | none (control) | 0.55 | MC |
| SRR8582892 | panicle | PM | 7.79 | MC |
| SRR1213696 | endosprem | wt(milk grains) | 0.37 | MC |
| SRR1213697 | endosprem | wt(mature seeds) | 0.36 | MC |
| SRR1633182 | panicle | WT | 1.64 | MC |
| SRR1633185 | panicle | WT | 2.18 | MC |
| SRR5278375 | pistil | "Balilla,S1" | 0.50 | MC |
| SRR5278376 | pistil | "Balilla,S2" | 0.67 | MC |
| SRR5278377 | pistil | "Balilla,S2" | 1.01 | MC |
| SRR5278378 | pistil | "Balilla,S3" | 3.10 | MC |
| SRR5278379 | pistil | "Balilla,S3" | 5.52 | MC |
| SRR5126147 | root | "mock,1_day" | 0.43 | MC |
| SRR5126148 | root | "mock,1_day" | 1.54 | MC |
| SRR5126149 | root | "mock,1_day" | 0.95 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 0.58 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 0.68 | MC |
| SRR5126153 | root | "mock,7_days" | 0.70 | MC |
| SRR5126155 | root | "mock,7_days" | 1.25 | MC |
| SRR5126157 | root | "mock,7_days" | 1.03 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 1.45 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 2.42 | MC |
| SRR5126167 | root | "mock,14_days" | 0.33 | MC |
| SRR5126169 | root | "mock,14_days" | 1.03 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 1.31 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 0.98 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 0.78 | MC |
| SRR1213695 | root | wt | 0.37 | MC |
| SRR6502096 | root | control | 0.39 | MC |
| SRR6502104 | root | 100 mM NaCl | 0.37 | MC |
| SRR6502105 | root | 100 mM NaCl | 0.88 | MC |
| SRR6502107 | root | control | 0.56 | MC |
| SRR6502108 | root | control | 0.60 | MC |
| SRR1740431 | root_elongation_zone | wt | 0.50 | MC |
| SRR1740432 | root_elongation_zone | wt | 0.28 | MC |
| SRR1740433 | root_elongation_zone | wt | 0.57 | MC |
| SRR1740429 | root_meristematic_zone | wt | 1.15 | MC |
| SRR1740430 | root_meristematic_zone | wt | 0.76 | MC |
| SRR6441555 | seedling | wild_type | 2.33 | MC |
| SRR2154086 | seedling | wt | 4.00 | MC |
| SRR2154085 | seedling | wt | 4.07 | MC |
| SRR3098741 | seedling | wt | 0.45 | MC |
| SRR3098742 | seedling | wt | 1.57 | MC |
| SRR3098743 | seedling | wt | 0.76 | MC |
| SRR2857720 | seedling | drought_stress_1h | 1.78 | MC |
| SRR2857721 | seedling | drought_stress_6h | 0.52 | MC |
| SRR1944583 | seedling | no_treatment | 0.67 | MC |
| SRR358791 | seedling | wt | 1.45 | MC |
| SRR358792 | seedling | wt | 2.32 | MC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 2.92 | MC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 2.78 | MC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 6.10 | MC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 9.34 | MC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 7.30 | MC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 6.31 | MC |
| SRR4841741 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 2.87 | MC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 5.34 | MC |
| SRR4841743 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 4.41 | MC |
| SRR3950246 | shoot | Drought_during_3_days;Fr13_inoculated | 0.29 | MC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 1.75 | MC |
| SRR5796941 | shoot | "Control,22C for 10 min" | 1.66 | MC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 1.71 | MC |
| SRR5796943 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 2.25 | MC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 1.09 | MC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 1.86 | MC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 2.61 | MC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 2.63 | MC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 1.84 | MC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 1.93 | MC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 1.62 | MC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 1.91 | MC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 1.84 | MC |
| SRR5796954 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 0.40 | MC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 0.59 | MC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 1.48 | MC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 1.25 | MC |
| SRR5796958 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 1.81 | MC |
| SRR5796959 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 1.82 | MC |
| SRR5052708 | shoot_apical_meristem | 0_days_after_shift | 5.37 | MC |
| SRR5052709 | shoot_apical_meristem | 0_days_after_shift | 5.22 | MC |
| SRR5052710 | shoot_apical_meristem | 0_days_after_shift | 4.19 | MC |
| SRR5052711 | shoot_apical_meristem | 4_days_after_shift | 7.74 | MC |
| SRR5052713 | shoot_apical_meristem | 4_days_after_shift | 6.27 | MC |
| SRR5052714 | shoot_apical_meristem | 4_days_after_shift | 5.50 | MC |
| SRR5052716 | shoot_apical_meristem | 8_days_after_shift | 6.63 | MC |
| SRR5052719 | shoot_apical_meristem | 8_days_after_shift | 5.43 | MC |
| SRR5052720 | shoot_apical_meristem | 8_days_after_shift | 7.00 | MC |
| SRR5052721 | shoot_apical_meristem | 12_days_after_shift | 5.32 | MC |
| SRR5052722 | shoot_apical_meristem | 12_days_after_shift | 5.26 | MC |
| SRR5052723 | shoot_apical_meristem | 12_days_after_shift | 4.76 | MC |
| SRR5052724 | shoot_apical_meristem | 0_days_after_shift | 5.24 | MC |
| SRR5052725 | shoot_apical_meristem | 0_days_after_shift | 3.99 | MC |
| SRR5052726 | shoot_apical_meristem | 0_days_after_shift | 6.47 | MC |
| SRR5052727 | shoot_apical_meristem | 4_days_after_shift | 6.96 | MC |
| SRR5052728 | shoot_apical_meristem | 4_days_after_shift | 4.74 | MC |
| SRR5052730 | shoot_apical_meristem | 4_days_after_shift | 3.80 | MC |
| SRR5052731 | shoot_apical_meristem | 8_days_after_shift | 4.34 | MC |
| SRR5052732 | shoot_apical_meristem | 8_days_after_shift | 5.77 | MC |
| SRR5052733 | shoot_apical_meristem | 8_days_after_shift | 6.86 | MC |
| SRR5052734 | shoot_apical_meristem | 12_days_after_shift | 7.21 | MC |
| SRR5052735 | shoot_apical_meristem | 12_days_after_shift | 3.29 | MC |
| SRR1617553 | shoot_apical_meristem | no collect | 1.88 | MC |
| SRR1617554 | shoot_apical_meristem | no collect | 3.09 | MC |
| SRR1617556 | shoot_apical_meristem | no collect | 1.40 | MC |
| SRR1617557 | shoot_apical_meristem | no collect | 4.02 | MC |
| SRR1617558 | shoot_apical_meristem | no collect | 3.52 | MC |
| SRR1617559 | shoot_apical_meristem | no collect | 1.15 | MC |