| SRR358795 | callus | wt | 1.44 | MC |
| SRR5560727 | caryopsis | wild_type | 0.61 | MC |
| SRR5560728 | caryopsis | wild_type | 0.26 | MC |
| SRR5560729 | caryopsis | wild_type | 0.59 | MC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 0.67 | MC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 0.85 | MC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 1.18 | MC |
| SRR2338868 | endosprem | high_temperature | 0.90 | MC |
| SRR1213690 | flower | wt(flower buds) | 1.29 | MC |
| SRR1213691 | flower | wt | 0.62 | MC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 0.41 | MC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.24 | MC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.27 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 0.22 | MC |
| SRR1952803 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 0.54 | MC |
| SRR6417966 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 0.49 | MC |
| SRR3209771 | leaf | Drought;Long_Day | 0.28 | MC |
| SRR8611901 | leaf | Non-inoculated | 0.42 | MC |
| SRR8611902 | leaf | Non-inoculated | 0.99 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 0.30 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 0.59 | MC |
| SRR1213693 | leaf | wt | 0.22 | MC |
| SRR6168973 | leaf | none (control) | 0.38 | MC |
| SRR1213696 | endosprem | wt(milk grains) | 0.34 | MC |
| SRR1633182 | panicle | WT | 0.62 | MC |
| SRR5126147 | root | "mock,1_day" | 0.64 | MC |
| SRR5126148 | root | "mock,1_day" | 0.64 | MC |
| SRR5126149 | root | "mock,1_day" | 0.66 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 0.48 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 0.78 | MC |
| SRR5126153 | root | "mock,7_days" | 0.33 | MC |
| SRR5126155 | root | "mock,7_days" | 1.14 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 0.67 | MC |
| SRR5126165 | root | "mock,14_days" | 0.76 | MC |
| SRR5126167 | root | "mock,14_days" | 0.62 | MC |
| SRR5126169 | root | "mock,14_days" | 0.33 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 0.35 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 0.45 | MC |
| SRR3472900 | root | nontransgenic_rice_plant | 1.99 | MC |
| SRR1213694 | root | wt | 0.25 | MC |
| SRR6502106 | root | control | 0.33 | MC |
| SRR1740435 | root_differentiation_zone | wt | 0.66 | MC |
| SRR1740436 | root_differentiation_zone | wt | 0.25 | MC |
| SRR1740431 | root_elongation_zone | wt | 0.64 | MC |
| SRR1740432 | root_elongation_zone | wt | 0.31 | MC |
| SRR1740433 | root_elongation_zone | wt | 0.44 | MC |
| SRR1740429 | root_meristematic_zone | wt | 0.29 | MC |
| SRR1740430 | root_meristematic_zone | wt | 0.73 | MC |
| SRR3098742 | seedling | wt | 0.25 | MC |
| SRR3098743 | seedling | wt | 0.30 | MC |
| SRR2857719 | seedling | drought_stress_0h | 0.35 | MC |
| SRR2857721 | seedling | drought_stress_6h | 0.29 | MC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 2.96 | MC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 4.02 | MC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 5.71 | MC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 6.11 | MC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 5.74 | MC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 5.83 | MC |
| SRR3950244 | shoot | Drought_during_3_days;Fr13_inoculated | 0.37 | MC |
| SRR3950245 | shoot | Drought_during_3_days;Fr13_inoculated | 0.70 | MC |
| SRR3950246 | shoot | Drought_during_3_days;Fr13_inoculated | 0.77 | MC |
| SRR3950247 | shoot | No_DIS;Fr13_inoculated | 0.20 | MC |
| SRR3950248 | shoot | No_DIS;Fr13_inoculated | 0.17 | MC |
| SRR3950249 | shoot | No_DIS;Fr13_inoculated | 0.17 | MC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 0.46 | MC |
| SRR5052708 | shoot_apical_meristem | 0_days_after_shift | 0.48 | MC |
| SRR5052709 | shoot_apical_meristem | 0_days_after_shift | 1.25 | MC |
| SRR5052710 | shoot_apical_meristem | 0_days_after_shift | 1.13 | MC |
| SRR5052711 | shoot_apical_meristem | 4_days_after_shift | 2.07 | MC |
| SRR5052713 | shoot_apical_meristem | 4_days_after_shift | 1.36 | MC |
| SRR5052714 | shoot_apical_meristem | 4_days_after_shift | 1.09 | MC |
| SRR5052716 | shoot_apical_meristem | 8_days_after_shift | 1.81 | MC |
| SRR5052719 | shoot_apical_meristem | 8_days_after_shift | 2.00 | MC |
| SRR5052720 | shoot_apical_meristem | 8_days_after_shift | 1.30 | MC |
| SRR5052721 | shoot_apical_meristem | 12_days_after_shift | 2.02 | MC |
| SRR5052722 | shoot_apical_meristem | 12_days_after_shift | 1.51 | MC |
| SRR5052723 | shoot_apical_meristem | 12_days_after_shift | 1.02 | MC |
| SRR5052725 | shoot_apical_meristem | 0_days_after_shift | 0.68 | MC |
| SRR5052727 | shoot_apical_meristem | 4_days_after_shift | 1.67 | MC |
| SRR5052728 | shoot_apical_meristem | 4_days_after_shift | 2.12 | MC |
| SRR5052730 | shoot_apical_meristem | 4_days_after_shift | 1.03 | MC |
| SRR5052731 | shoot_apical_meristem | 8_days_after_shift | 1.56 | MC |
| SRR5052732 | shoot_apical_meristem | 8_days_after_shift | 0.63 | MC |
| SRR5052733 | shoot_apical_meristem | 8_days_after_shift | 1.05 | MC |
| SRR5052734 | shoot_apical_meristem | 12_days_after_shift | 0.81 | MC |
| SRR1617550 | shoot_apical_meristem | no collect | 1.45 | MC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 2.00 | MC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 1.48 | MC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 2.87 | MC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 2.76 | MC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 2.87 | MC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 2.53 | MC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 1.86 | MC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 1.56 | MC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 3.09 | MC |