| SRR4457249 | 2nd_leaf | DAH4 | 0.85 | MC |
| SRR4457251 | 2nd_leaf | DAH4 | 1.39 | MC |
| SRR4457252 | 2nd_leaf | DAH12 | 0.52 | MC |
| SRR4457253 | 2nd_leaf | DAH12 | 1.13 | MC |
| SRR4457254 | 2nd_leaf | DAH12 | 0.26 | MC |
| SRR4457258 | 2nd_leaf | DAH28 | 0.48 | MC |
| SRR4457259 | 2nd_leaf | DAH28 | 2.19 | MC |
| SRR4457260 | 2nd_leaf | DAH28 | 1.09 | MC |
| SRR4457262 | 2nd_leaf | DAH36 | 1.43 | MC |
| SRR4457263 | 2nd_leaf | DAH36 | 1.85 | MC |
| SRR4457264 | 2nd_leaf | DAH44 | 0.76 | MC |
| SRR4457265 | 2nd_leaf | DAH44 | 0.44 | MC |
| SRR4457266 | 2nd_leaf | DAH44 | 1.63 | MC |
| SRR3745125 | anther | wt | 2.59 | MC |
| SRR3745126 | anther | wt | 3.26 | MC |
| SRR3745127 | anther | wt | 3.38 | MC |
| SRR358795 | callus | wt | 2.31 | MC |
| SRR358796 | callus | wt | 2.99 | MC |
| SRR358797 | callus | wt | 1.45 | MC |
| SRR5560727 | caryopsis | wild_type | 1.53 | MC |
| SRR7265400 | coleoptile | 2dA | 3.11 | MC |
| SRR7265401 | coleoptile | 2dA | 2.38 | MC |
| SRR7265402 | coleoptile | 2dA | 2.07 | MC |
| SRR7265403 | coleoptile | 2dN | 1.05 | MC |
| SRR7265404 | coleoptile | 2dN | 1.19 | MC |
| SRR7265405 | coleoptile | 2dN | 0.66 | MC |
| SRR7265409 | coleoptile | 3dN | 0.74 | MC |
| SRR7265410 | coleoptile | 3dN | 0.92 | MC |
| SRR7265411 | coleoptile | 3dN | 0.87 | MC |
| SRR7265412 | coleoptile | 4dA | 3.15 | MC |
| SRR7265415 | coleoptile | 4dN | 1.72 | MC |
| SRR7265416 | coleoptile | 4dN | 2.11 | MC |
| SRR7265417 | coleoptile | 4dN | 1.73 | MC |
| SRR7265373 | embryo | dry seed 0 h | 0.33 | MC |
| SRR7265376 | embryo | 1hA | 0.34 | MC |
| SRR7265377 | embryo | 1hA | 0.49 | MC |
| SRR7265378 | embryo | 1hA | 0.39 | MC |
| SRR7265379 | embryo | 1hN | 0.46 | MC |
| SRR7265380 | embryo | 1hN | 0.41 | MC |
| SRR7265381 | embryo | 1hN | 0.38 | MC |
| SRR7265386 | embryo | 3hN | 0.44 | MC |
| SRR7265387 | embryo | 3hN | 0.27 | MC |
| SRR7265388 | embryo | 12hA | 1.16 | MC |
| SRR7265389 | embryo | 12hA | 1.52 | MC |
| SRR7265390 | embryo | 12hA | 4.25 | MC |
| SRR7265391 | embryo | 12hN | 0.45 | MC |
| SRR7265392 | embryo | 12hN | 0.53 | MC |
| SRR7265393 | embryo | 12hN | 0.55 | MC |
| SRR7265394 | embryo | 24hA | 0.64 | MC |
| SRR7265396 | embryo | 24hA | 1.89 | MC |
| SRR7265397 | embryo | 24hN | 0.69 | MC |
| SRR7265398 | embryo | 24hN | 0.74 | MC |
| SRR7265399 | embryo | 24hN | 0.85 | MC |
| SRR2338866 | endosprem | control | 3.11 | MC |
| SRR2338869 | endosprem | high_temperature | 3.02 | MC |
| SRR976168 | flag_leaf | wild_type | 2.02 | MC |
| SRR4457232 | flag_leaf | DAH4 | 0.65 | MC |
| SRR4457235 | flag_leaf | DAH12 | 1.22 | MC |
| SRR4457236 | flag_leaf | DAH12 | 2.65 | MC |
| SRR4457237 | flag_leaf | DAH20 | 1.15 | MC |
| SRR4457238 | flag_leaf | DAH20 | 0.65 | MC |
| SRR4457239 | flag_leaf | DAH20 | 0.83 | MC |
| SRR4457240 | flag_leaf | DAH28 | 4.03 | MC |
| SRR4457241 | flag_leaf | DAH28 | 0.73 | MC |
| SRR4457242 | flag_leaf | DAH28 | 2.00 | MC |
| SRR4457245 | flag_leaf | DAH36 | 1.08 | MC |
| SRR4457246 | flag_leaf | DAH44 | 1.87 | MC |
| SRR4457247 | flag_leaf | DAH44 | 1.50 | MC |
| SRR4457248 | flag_leaf | DAH44 | 1.34 | MC |
| SRR1213691 | flower | wt | 1.22 | MC |
| SRR2922623 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 5.56 | MC |
| SRR2922624 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 0.90 | MC |
| SRR1952778 | leaf | 48_hrs_after_inoculation_with_BLS256 | 2.94 | MC |
| SRR1952779 | leaf | 48_hrs_after_inoculation_with_BLS256 | 5.83 | MC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 1.71 | MC |
| SRR1952782 | leaf | 48_hrs_after_inoculation_with_BLS279 | 0.86 | MC |
| SRR1952783 | leaf | 48_hrs_after_inoculation_with_BLS279 | 2.85 | MC |
| SRR1952785 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 1.76 | MC |
| SRR1952786 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 5.08 | MC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.56 | MC |
| SRR1952792 | leaf | 48_hrs_after_inoculation_with_L8 | 2.30 | MC |
| SRR1952794 | leaf | 48_hrs_after_inoculation_with_RS105 | 4.16 | MC |
| SRR1952795 | leaf | 48_hrs_after_inoculation_with_RS105 | 1.14 | MC |
| SRR1952800 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 2.70 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 3.20 | MC |
| SRR1952803 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 1.21 | MC |
| SRR1952804 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 1.91 | MC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.54 | MC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 1.13 | MC |
| SRR1952807 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 1.52 | MC |
| SRR1952808 | leaf | 48_hrs_after_mock_inoculation | 3.64 | MC |
| SRR1952810 | leaf | 48_hrs_after_mock_inoculation | 3.04 | MC |
| SRR1761789 | leaf | "wild_type,drought,2" | 0.49 | MC |
| SRR1761791 | leaf | "wild_type,control,2" | 4.97 | MC |
| SRR1761781 | leaf | "wild_type,drought,1" | 0.49 | MC |
| SRR1761783 | leaf | "wild_type,control,1" | 4.97 | MC |
| SRR1761529 | leaf | drought | 0.49 | MC |
| SRR1761531 | leaf | control | 4.97 | MC |
| SRR504365 | leaf | wt | 0.58 | MC |
| SRR6417964 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 1.53 | MC |
| SRR6417966 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 1.38 | MC |
| SRR6417968 | leaf | H2O_control | 0.60 | MC |
| SRR6417969 | leaf | H2O_control | 2.27 | MC |
| SRR3209771 | leaf | Drought;Long_Day | 1.23 | MC |
| SRR3209772 | leaf | Drought;Long_Day | 1.92 | MC |
| SRR3209778 | leaf | Drought;Long_Day | 2.41 | MC |
| SRR3209780 | leaf | Drought;Short_Day | 3.37 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 2.86 | MC |
| SRR1213692 | leaf | wt | 0.80 | MC |
| SRR6502087 | leaf | 100 mM NaCl | 2.20 | MC |
| SRR6502088 | leaf | control | 4.07 | MC |
| SRR6502089 | leaf | control | 2.37 | MC |
| SRR6502090 | leaf | control | 1.62 | MC |
| SRR6502100 | leaf | control | 2.26 | MC |
| SRR6053397 | leaf | gibberellic acid (GA) | 1.58 | MC |
| SRR6053398 | leaf | Paclobutrazol (PB) | 3.90 | MC |
| SRR6053399 | leaf | Paclobutrazol (PB) | 2.68 | MC |
| SRR6053400 | leaf | Paclobutrazol (PB) | 2.76 | MC |
| SRR6168974 | leaf | none (control) | 0.88 | MC |
| SRR6168975 | leaf | none (control) | 2.98 | MC |
| SRR6168981 | leaf | none (control) | 0.69 | MC |
| SRR6168983 | leaf | 0.5% Na2CO3 solution for 36h | 0.92 | MC |
| SRR8582889 | panicle | AM | 0.15 | MC |
| SRR8582890 | panicle | AM | 0.34 | MC |
| SRR8582891 | panicle | PM | 1.07 | MC |
| SRR8582892 | panicle | PM | 1.11 | MC |
| SRR5110429 | panicle | Dawn | 2.08 | MC |
| SRR5110430 | panicle | Dawn | 4.16 | MC |
| SRR5110431 | panicle | Dawn | 2.21 | MC |
| SRR5110435 | panicle | Dawn + 3.5h | 0.31 | MC |
| SRR5110436 | panicle | Dawn + 3.5h | 2.22 | MC |
| SRR5110439 | panicle | Dawn + 7h | 2.52 | MC |
| SRR5110441 | panicle | Dawn + 10.5h | 4.40 | MC |
| SRR5110442 | panicle | Dawn + 10.5h | 1.32 | MC |
| SRR5110443 | panicle | Dawn + 10.5h | 3.75 | MC |
| SRR5110445 | panicle | Dusk | 0.95 | MC |
| SRR5110446 | panicle | Dusk | 1.08 | MC |
| SRR5110447 | panicle | Dusk | 1.54 | MC |
| SRR5110449 | panicle | Dawn + 14h | 4.94 | MC |
| SRR5110450 | panicle | Dawn + 14h | 3.93 | MC |
| SRR5110451 | panicle | Dawn + 14h | 0.41 | MC |
| SRR5110454 | panicle | Dawn + 17.5h | 0.55 | MC |
| SRR5110455 | panicle | Dawn + 17.5h | 4.13 | MC |
| SRR5110456 | panicle | Dawn + 17.5h | 0.50 | MC |
| SRR5110459 | panicle | Dawn + 21h | 3.27 | MC |
| SRR5110460 | panicle | Dawn + 21h | 1.03 | MC |
| SRR1213696 | endosprem | wt(milk grains) | 0.26 | MC |
| SRR1213697 | endosprem | wt(mature seeds) | 0.49 | MC |
| SRR1633182 | panicle | WT | 0.98 | MC |
| SRR1633185 | panicle | WT | 1.13 | MC |
| SRR5278374 | pistil | "Balilla,S1" | 0.24 | MC |
| SRR5278379 | pistil | "Balilla,S3" | 1.03 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 3.12 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 0.53 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 0.50 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 4.63 | MC |
| SRR1213694 | root | wt | 1.44 | MC |
| SRR6502091 | root | 100 mM NaCl | 4.37 | MC |
| SRR6502103 | root | 100 mM NaCl | 5.04 | MC |
| SRR6502108 | root | control | 2.80 | MC |
| SRR1740432 | root_elongation_zone | wt | 0.43 | MC |
| SRR1740433 | root_elongation_zone | wt | 0.76 | MC |
| SRR1740430 | root_meristematic_zone | wt | 1.69 | MC |
| SRR2154082 | seedling | wt | 2.36 | MC |
| SRR2154083 | seedling | wt | 0.84 | MC |
| SRR2154084 | seedling | wt | 1.36 | MC |
| SRR2154085 | seedling | wt | 0.69 | MC |
| SRR2154087 | seedling | wt | 1.68 | MC |
| SRR3098741 | seedling | wt | 2.30 | MC |
| SRR3098742 | seedling | wt | 0.64 | MC |
| SRR3098743 | seedling | wt | 0.29 | MC |
| SRR2857720 | seedling | drought_stress_1h | 1.32 | MC |
| SRR2857721 | seedling | drought_stress_6h | 1.62 | MC |
| SRR1944582 | seedling | "with_chilling_teatment_(4C,33h)" | 1.17 | MC |
| SRR358791 | seedling | wt | 4.35 | MC |
| SRR358792 | seedling | wt | 5.20 | MC |
| SRR358793 | seedling | wt | 4.46 | MC |
| SRR358794 | seedling | wt | 3.85 | MC |
| SRR3950251 | shoot | Drought_during_3_days;_mock_inoculated | 3.89 | MC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 2.08 | MC |
| SRR5796958 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 0.53 | MC |
| SRR5052708 | shoot_apical_meristem | 0_days_after_shift | 5.68 | MC |
| SRR5052710 | shoot_apical_meristem | 0_days_after_shift | 7.33 | MC |
| SRR5052711 | shoot_apical_meristem | 4_days_after_shift | 7.29 | MC |
| SRR5052713 | shoot_apical_meristem | 4_days_after_shift | 7.63 | MC |
| SRR5052714 | shoot_apical_meristem | 4_days_after_shift | 7.49 | MC |
| SRR5052716 | shoot_apical_meristem | 8_days_after_shift | 7.86 | MC |
| SRR5052721 | shoot_apical_meristem | 12_days_after_shift | 6.14 | MC |
| SRR5052722 | shoot_apical_meristem | 12_days_after_shift | 7.62 | MC |
| SRR5052724 | shoot_apical_meristem | 0_days_after_shift | 6.61 | MC |
| SRR5052725 | shoot_apical_meristem | 0_days_after_shift | 7.82 | MC |
| SRR5052726 | shoot_apical_meristem | 0_days_after_shift | 6.84 | MC |
| SRR5052731 | shoot_apical_meristem | 8_days_after_shift | 2.01 | MC |
| SRR5052732 | shoot_apical_meristem | 8_days_after_shift | 1.48 | MC |
| SRR5052734 | shoot_apical_meristem | 12_days_after_shift | 8.22 | MC |
| SRR5052735 | shoot_apical_meristem | 12_days_after_shift | 6.69 | MC |
| SRR1617549 | shoot_apical_meristem | no collect | 1.06 | MC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 0.40 | MC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 0.27 | MC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 0.66 | MC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 0.42 | MC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 0.44 | MC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 0.36 | MC |
| SRR7760292 | spikelet | control condition (29C) for 7 hrs | 1.60 | MC |
| SRR7760293 | spikelet | control condition (29C) for 7 hrs | 1.48 | MC |
| SRR7760296 | spikelet | high temperature treatment (38C) for 7 hrs | 1.55 | MC |
| SRR7760297 | spikelet | control condition (29C) for 7 hrs | 1.38 | MC |
| SRR7760299 | spikelet | control condition (29C) for 7 hrs | 1.80 | MC |
| SRR7760300 | spikelet | high temperature treatment (38C) for 7 hrs | 0.88 | MC |
| SRR7760301 | spikelet | high temperature treatment (38C) for 7 hrs | 1.37 | MC |