| SRR4457252 | 2nd_leaf | DAH12 | 0.39 | MC |
| SRR4457254 | 2nd_leaf | DAH12 | 0.45 | MC |
| SRR4457257 | 2nd_leaf | DAH20 | 0.39 | MC |
| SRR4457258 | 2nd_leaf | DAH28 | 0.26 | MC |
| SRR4457259 | 2nd_leaf | DAH28 | 0.88 | MC |
| SRR4457260 | 2nd_leaf | DAH28 | 0.33 | MC |
| SRR4457263 | 2nd_leaf | DAH36 | 0.69 | MC |
| SRR4457265 | 2nd_leaf | DAH44 | 0.48 | MC |
| SRR358795 | callus | wt | 1.32 | MC |
| SRR358796 | callus | wt | 1.57 | MC |
| SRR4947495 | root | control | 4.48 | MC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 0.41 | MC |
| SRR7265400 | coleoptile | 2dA | 1.35 | MC |
| SRR7265401 | coleoptile | 2dA | 1.42 | MC |
| SRR7265402 | coleoptile | 2dA | 1.38 | MC |
| SRR7265403 | coleoptile | 2dN | 0.99 | MC |
| SRR7265404 | coleoptile | 2dN | 0.81 | MC |
| SRR7265405 | coleoptile | 2dN | 0.82 | MC |
| SRR7265406 | coleoptile | 3dA | 0.54 | MC |
| SRR7265407 | coleoptile | 3dA | 0.52 | MC |
| SRR7265409 | coleoptile | 3dN | 0.64 | MC |
| SRR7265410 | coleoptile | 3dN | 0.43 | MC |
| SRR7265411 | coleoptile | 3dN | 0.69 | MC |
| SRR7265412 | coleoptile | 4dA | 0.53 | MC |
| SRR7265416 | coleoptile | 4dN | 0.98 | MC |
| SRR7265417 | coleoptile | 4dN | 0.66 | MC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 3.13 | MC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 0.78 | MC |
| SRR4104637 | crown | "Zn_deficiency,8_days_of_treatment" | 3.23 | MC |
| SRR4104638 | crown | "Zn_deficiency,8_days_of_treatment" | 2.13 | MC |
| SRR4104647 | crown | "Zn_Efficient,8_days_of_treatment" | 1.06 | MC |
| SRR4104640 | crown | "Zn_deficiency,8_days_of_treatment" | 2.14 | MC |
| SRR4104641 | crown | "Zn_deficiency,8_days_of_treatment" | 2.41 | MC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 0.64 | MC |
| SRR4104643 | crown | "Zn_Efficient,8_days_of_treatment" | 0.87 | MC |
| SRR4104644 | crown | "Zn_Efficient,8_days_of_treatment" | 2.63 | MC |
| SRR4104646 | crown | "Zn_Efficient,8_days_of_treatment" | 1.05 | MC |
| SRR7265377 | embryo | 1hA | 0.34 | MC |
| SRR7265378 | embryo | 1hA | 0.26 | MC |
| SRR7265381 | embryo | 1hN | 0.23 | MC |
| SRR7265382 | embryo | 3hA | 0.68 | MC |
| SRR7265384 | embryo | 3hA | 0.47 | MC |
| SRR7265387 | embryo | 3hN | 0.29 | MC |
| SRR7265388 | embryo | 12hA | 0.64 | MC |
| SRR7265389 | embryo | 12hA | 0.59 | MC |
| SRR7265390 | embryo | 12hA | 0.73 | MC |
| SRR7265391 | embryo | 12hN | 1.15 | MC |
| SRR7265392 | embryo | 12hN | 0.62 | MC |
| SRR7265393 | embryo | 12hN | 1.36 | MC |
| SRR7265395 | embryo | 24hA | 0.68 | MC |
| SRR7265396 | embryo | 24hA | 0.97 | MC |
| SRR7265397 | embryo | 24hN | 0.59 | MC |
| SRR7265398 | embryo | 24hN | 0.76 | MC |
| SRR7265399 | embryo | 24hN | 0.56 | MC |
| SRR976168 | flag_leaf | wild_type | 0.68 | MC |
| SRR4457231 | flag_leaf | DAH4 | 0.28 | MC |
| SRR4457233 | flag_leaf | DAH4 | 0.27 | MC |
| SRR4457234 | flag_leaf | DAH12 | 0.31 | MC |
| SRR4457235 | flag_leaf | DAH12 | 0.38 | MC |
| SRR4457236 | flag_leaf | DAH12 | 0.47 | MC |
| SRR4457237 | flag_leaf | DAH20 | 0.98 | MC |
| SRR4457238 | flag_leaf | DAH20 | 0.41 | MC |
| SRR4457239 | flag_leaf | DAH20 | 0.74 | MC |
| SRR4457241 | flag_leaf | DAH28 | 0.58 | MC |
| SRR4457242 | flag_leaf | DAH28 | 0.67 | MC |
| SRR4457246 | flag_leaf | DAH44 | 0.40 | MC |
| SRR8060835 | leaf | wild_type | 0.25 | MC |
| SRR8060836 | leaf | wild_type | 0.30 | MC |
| SRR8240824 | leaf | wild_type | 0.34 | MC |
| SRR8240826 | leaf | wild_type | 0.53 | MC |
| SRR8240818 | leaf | wild_type | 0.28 | MC |
| SRR8240819 | leaf | wild_type | 0.61 | MC |
| SRR8240820 | leaf | wild_type | 0.53 | MC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 0.33 | MC |
| SRR2922623 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 0.88 | MC |
| SRR2922624 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 0.67 | MC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 0.54 | MC |
| SRR1952787 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.81 | MC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.51 | MC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.79 | MC |
| SRR1952791 | leaf | 48_hrs_after_inoculation_with_L8 | 0.80 | MC |
| SRR1952792 | leaf | 48_hrs_after_inoculation_with_L8 | 0.32 | MC |
| SRR1952794 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.87 | MC |
| SRR1952795 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.73 | MC |
| SRR1952797 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 0.41 | MC |
| SRR1952798 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 1.45 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 0.54 | MC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 0.51 | MC |
| SRR1952804 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 0.45 | MC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.51 | MC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.90 | MC |
| SRR1952807 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.97 | MC |
| SRR1761789 | leaf | "wild_type,drought,2" | 0.98 | MC |
| SRR1761781 | leaf | "wild_type,drought,1" | 0.98 | MC |
| SRR1761529 | leaf | drought | 0.98 | MC |
| SRR6417964 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 0.77 | MC |
| SRR6417965 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 0.61 | MC |
| SRR6417966 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 1.13 | MC |
| SRR6417967 | leaf | H2O_control | 0.93 | MC |
| SRR6417968 | leaf | H2O_control | 0.69 | MC |
| SRR6417969 | leaf | H2O_control | 0.56 | MC |
| SRR3209769 | leaf | Watered;Long_Day | 0.97 | MC |
| SRR3209770 | leaf | Watered;Long_Day | 0.76 | MC |
| SRR3209772 | leaf | Drought;Long_Day | 0.30 | MC |
| SRR3209773 | leaf | Watered;Short_Day | 0.40 | MC |
| SRR3209774 | leaf | Watered;Short_Day | 0.35 | MC |
| SRR3209777 | leaf | Watered;Long_Day | 0.41 | MC |
| SRR3209778 | leaf | Drought;Long_Day | 0.64 | MC |
| SRR3209779 | leaf | Watered;Short_Day | 0.73 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 2.05 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 2.38 | MC |
| SRR6502087 | leaf | 100 mM NaCl | 0.68 | MC |
| SRR6502088 | leaf | control | 0.47 | MC |
| SRR6502090 | leaf | control | 0.51 | MC |
| SRR6502097 | leaf | 100 mM NaCl | 0.41 | MC |
| SRR6502098 | leaf | 100 mM NaCl | 0.69 | MC |
| SRR6502099 | leaf | 100 mM NaCl | 0.92 | MC |
| SRR6502101 | leaf | control | 0.55 | MC |
| SRR6502102 | leaf | control | 0.64 | MC |
| SRR5856927 | leaf | control | 1.37 | MC |
| SRR5856928 | leaf | control | 2.00 | MC |
| SRR5856930 | leaf | salt | 0.33 | MC |
| SRR5856931 | leaf | salt | 0.57 | MC |
| SRR5856932 | leaf | salt | 0.56 | MC |
| SRR5856936 | leaf | salt | 0.34 | MC |
| SRR5856937 | leaf | salt | 0.86 | MC |
| SRR5856938 | leaf | salt | 0.31 | MC |
| SRR6168973 | leaf | none (control) | 0.40 | MC |
| SRR6168977 | leaf | 0.5% Na2CO3 solution for 36h | 0.48 | MC |
| SRR6168979 | leaf | none (control) | 1.09 | MC |
| SRR6168980 | leaf | none (control) | 0.32 | MC |
| SRR6168982 | leaf | 0.5% Na2CO3 solution for 36h | 0.29 | MC |
| SRR5110443 | panicle | Dawn + 10.5h | 0.44 | MC |
| SRR1213697 | endosprem | wt(mature seeds) | 0.23 | MC |
| SRR5278377 | pistil | "Balilla,S2" | 0.35 | MC |
| SRR5126147 | root | "mock,1_day" | 0.77 | MC |
| SRR5126148 | root | "mock,1_day" | 1.84 | MC |
| SRR5126149 | root | "mock,1_day" | 1.50 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 0.54 | MC |
| SRR5126153 | root | "mock,7_days" | 1.53 | MC |
| SRR5126155 | root | "mock,7_days" | 3.21 | MC |
| SRR5126157 | root | "mock,7_days" | 1.88 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 0.51 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 0.94 | MC |
| SRR5126165 | root | "mock,14_days" | 1.43 | MC |
| SRR5126167 | root | "mock,14_days" | 0.75 | MC |
| SRR5126169 | root | "mock,14_days" | 1.68 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 0.54 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 0.72 | MC |
| SRR3472900 | root | nontransgenic_rice_plant | 2.72 | MC |
| SRR1213694 | root | wt | 1.46 | MC |
| SRR4947478 | root | control | 4.73 | MC |
| SRR4947479 | root | control | 4.27 | MC |
| SRR4947480 | root | control | 2.85 | MC |
| SRR4947481 | root | control | 3.45 | MC |
| SRR4947482 | root | Al | 1.19 | MC |
| SRR4947483 | root | Al | 1.70 | MC |
| SRR4947484 | root | Al | 2.08 | MC |
| SRR4947485 | root | Al | 1.37 | MC |
| SRR4947487 | root | control | 3.29 | MC |
| SRR4947488 | root | control | 2.81 | MC |
| SRR4947489 | root | control | 4.37 | MC |
| SRR4947490 | root | Al | 2.28 | MC |
| SRR4947491 | root | Al | 1.18 | MC |
| SRR4947492 | root | Al | 2.38 | MC |
| SRR4947493 | root | Al | 1.89 | MC |
| SRR4947494 | root | control | 3.52 | MC |
| SRR4947497 | root | control | 1.35 | MC |
| SRR4947498 | root | Al | 0.76 | MC |
| SRR4947499 | root | Al | 1.06 | MC |
| SRR4947500 | root | Al | 1.74 | MC |
| SRR4947501 | root | Al | 0.99 | MC |
| SRR4947502 | root | control | 2.13 | MC |
| SRR4947503 | root | control | 3.01 | MC |
| SRR4947504 | root | control | 3.50 | MC |
| SRR4947505 | root | control | 4.65 | MC |
| SRR4947506 | root | Al | 0.73 | MC |
| SRR4947507 | root | Al | 0.75 | MC |
| SRR4947508 | root | Al | 1.98 | MC |
| SRR4947509 | root | Al | 2.37 | MC |
| SRR6502093 | root | 100 mM NaCl | 5.37 | MC |
| SRR6502106 | root | control | 3.82 | MC |
| SRR6502107 | root | control | 3.51 | MC |
| SRR6502108 | root | control | 4.52 | MC |
| SRR1740435 | root_differentiation_zone | wt | 0.42 | MC |
| SRR1740436 | root_differentiation_zone | wt | 0.53 | MC |
| SRR1740433 | root_elongation_zone | wt | 0.42 | MC |
| SRR2154086 | seedling | wt | 0.54 | MC |
| SRR2154083 | seedling | wt | 0.30 | MC |
| SRR3098741 | seedling | wt | 0.45 | MC |
| SRR3098742 | seedling | wt | 0.24 | MC |
| SRR3098743 | seedling | wt | 0.17 | MC |
| SRR2857719 | seedling | drought_stress_0h | 0.95 | MC |
| SRR1944582 | seedling | "with_chilling_teatment_(4C,33h)" | 0.88 | MC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 2.52 | MC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 3.80 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 12.23 | MC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 8.73 | MC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 7.27 | MC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 3.09 | MC |
| SRR4841743 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 6.72 | MC |
| SRR3950246 | shoot | Drought_during_3_days;Fr13_inoculated | 2.35 | MC |
| SRR3950247 | shoot | No_DIS;Fr13_inoculated | 1.68 | MC |
| SRR3950248 | shoot | No_DIS;Fr13_inoculated | 1.52 | MC |
| SRR3950249 | shoot | No_DIS;Fr13_inoculated | 0.83 | MC |
| SRR3950250 | shoot | Drought_during_3_days;_mock_inoculated | 0.72 | MC |
| SRR3950251 | shoot | Drought_during_3_days;_mock_inoculated | 0.37 | MC |
| SRR3950252 | shoot | Drought_during_3_days;_mock_inoculated | 0.31 | MC |
| SRR3950253 | shoot | No_DIS;_mock_inoculated | 0.74 | MC |
| SRR3950254 | shoot | No_DIS;_mock_inoculated | 0.46 | MC |
| SRR5796941 | shoot | "Control,22C for 10 min" | 0.42 | MC |
| SRR5796943 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 0.34 | MC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 0.41 | MC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 0.49 | MC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 0.43 | MC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 0.33 | MC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 0.42 | MC |