| SRR4457251 | 2nd_leaf | DAH4 | 0.44 | MC |
| SRR4457253 | 2nd_leaf | DAH12 | 0.58 | MC |
| SRR4457254 | 2nd_leaf | DAH12 | 0.32 | MC |
| SRR4457255 | 2nd_leaf | DAH20 | 0.60 | MC |
| SRR4457256 | 2nd_leaf | DAH20 | 0.43 | MC |
| SRR4457257 | 2nd_leaf | DAH20 | 0.68 | MC |
| SRR4457258 | 2nd_leaf | DAH28 | 2.07 | MC |
| SRR4457259 | 2nd_leaf | DAH28 | 1.33 | MC |
| SRR4457260 | 2nd_leaf | DAH28 | 0.89 | MC |
| SRR4457261 | 2nd_leaf | DAH36 | 1.59 | MC |
| SRR4457262 | 2nd_leaf | DAH36 | 0.68 | MC |
| SRR4457264 | 2nd_leaf | DAH44 | 1.74 | MC |
| SRR4457265 | 2nd_leaf | DAH44 | 1.46 | MC |
| SRR4457266 | 2nd_leaf | DAH44 | 1.89 | MC |
| SRR3745125 | anther | wt | 3.07 | MC |
| SRR3745126 | anther | wt | 3.64 | MC |
| SRR3745127 | anther | wt | 3.76 | MC |
| SRR358795 | callus | wt | 5.63 | MC |
| SRR358796 | callus | wt | 5.55 | MC |
| SRR358797 | callus | wt | 4.26 | MC |
| SRR358798 | callus | wt | 3.77 | MC |
| SRR4947495 | root | control | 3.22 | MC |
| SRR7265400 | coleoptile | 2dA | 2.67 | MC |
| SRR7265401 | coleoptile | 2dA | 3.03 | MC |
| SRR7265402 | coleoptile | 2dA | 2.41 | MC |
| SRR7265403 | coleoptile | 2dN | 1.41 | MC |
| SRR7265404 | coleoptile | 2dN | 1.29 | MC |
| SRR7265405 | coleoptile | 2dN | 1.16 | MC |
| SRR7265406 | coleoptile | 3dA | 2.11 | MC |
| SRR7265407 | coleoptile | 3dA | 1.89 | MC |
| SRR7265408 | coleoptile | 3dA | 1.42 | MC |
| SRR7265409 | coleoptile | 3dN | 1.03 | MC |
| SRR7265410 | coleoptile | 3dN | 1.36 | MC |
| SRR7265411 | coleoptile | 3dN | 1.22 | MC |
| SRR7265412 | coleoptile | 4dA | 0.92 | MC |
| SRR7265413 | coleoptile | 4dA | 1.68 | MC |
| SRR7265414 | coleoptile | 4dA | 1.56 | MC |
| SRR7265415 | coleoptile | 4dN | 1.07 | MC |
| SRR7265416 | coleoptile | 4dN | 1.17 | MC |
| SRR7265417 | coleoptile | 4dN | 0.92 | MC |
| SRR7265418 | coleoptile | 3dN1dA | 3.48 | MC |
| SRR7265419 | coleoptile | 3dN1dA | 1.86 | MC |
| SRR7265420 | coleoptile | 3dN1dA | 2.13 | MC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 3.52 | MC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 2.35 | MC |
| SRR4104637 | crown | "Zn_deficiency,8_days_of_treatment" | 2.57 | MC |
| SRR4104638 | crown | "Zn_deficiency,8_days_of_treatment" | 2.27 | MC |
| SRR4104647 | crown | "Zn_Efficient,8_days_of_treatment" | 3.57 | MC |
| SRR4104640 | crown | "Zn_deficiency,8_days_of_treatment" | 3.08 | MC |
| SRR4104641 | crown | "Zn_deficiency,8_days_of_treatment" | 3.64 | MC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 2.38 | MC |
| SRR4104643 | crown | "Zn_Efficient,8_days_of_treatment" | 3.18 | MC |
| SRR4104644 | crown | "Zn_Efficient,8_days_of_treatment" | 3.17 | MC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 3.52 | MC |
| SRR4104646 | crown | "Zn_Efficient,8_days_of_treatment" | 2.86 | MC |
| SRR7265373 | embryo | dry seed 0 h | 3.40 | MC |
| SRR7265374 | embryo | dry seed 0 h | 3.75 | MC |
| SRR7265375 | embryo | dry seed 0 h | 1.18 | MC |
| SRR7265376 | embryo | 1hA | 3.10 | MC |
| SRR7265377 | embryo | 1hA | 3.29 | MC |
| SRR7265380 | embryo | 1hN | 2.93 | MC |
| SRR7265382 | embryo | 3hA | 2.24 | MC |
| SRR7265383 | embryo | 3hA | 3.19 | MC |
| SRR7265384 | embryo | 3hA | 2.89 | MC |
| SRR7265385 | embryo | 3hN | 3.91 | MC |
| SRR7265386 | embryo | 3hN | 3.17 | MC |
| SRR7265388 | embryo | 12hA | 2.33 | MC |
| SRR7265389 | embryo | 12hA | 2.52 | MC |
| SRR7265390 | embryo | 12hA | 2.35 | MC |
| SRR7265391 | embryo | 12hN | 1.08 | MC |
| SRR7265392 | embryo | 12hN | 0.85 | MC |
| SRR7265393 | embryo | 12hN | 1.04 | MC |
| SRR7265394 | embryo | 24hA | 2.55 | MC |
| SRR7265395 | embryo | 24hA | 2.24 | MC |
| SRR7265396 | embryo | 24hA | 1.86 | MC |
| SRR7265397 | embryo | 24hN | 1.04 | MC |
| SRR7265398 | embryo | 24hN | 0.95 | MC |
| SRR7265399 | embryo | 24hN | 1.21 | MC |
| SRR2338866 | endosprem | control | 3.72 | MC |
| SRR4457233 | flag_leaf | DAH4 | 0.33 | MC |
| SRR4457234 | flag_leaf | DAH12 | 0.26 | MC |
| SRR4457235 | flag_leaf | DAH12 | 0.36 | MC |
| SRR4457237 | flag_leaf | DAH20 | 0.82 | MC |
| SRR4457239 | flag_leaf | DAH20 | 0.96 | MC |
| SRR4457240 | flag_leaf | DAH28 | 2.69 | MC |
| SRR4457241 | flag_leaf | DAH28 | 3.57 | MC |
| SRR4457242 | flag_leaf | DAH28 | 1.44 | MC |
| SRR4457243 | flag_leaf | DAH36 | 0.52 | MC |
| SRR4457244 | flag_leaf | DAH36 | 0.33 | MC |
| SRR4457245 | flag_leaf | DAH36 | 0.46 | MC |
| SRR4457246 | flag_leaf | DAH44 | 2.58 | MC |
| SRR4457247 | flag_leaf | DAH44 | 1.43 | MC |
| SRR4457248 | flag_leaf | DAH44 | 1.03 | MC |
| SRR8240824 | leaf | wild_type | 0.65 | MC |
| SRR8240826 | leaf | wild_type | 0.35 | MC |
| SRR8240818 | leaf | wild_type | 1.29 | MC |
| SRR8240820 | leaf | wild_type | 0.66 | MC |
| SRR2922622 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 5.63 | MC |
| SRR1952803 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 5.47 | MC |
| SRR1952809 | leaf | 48_hrs_after_mock_inoculation | 4.95 | MC |
| SRR1761790 | leaf | "wild_type,control,2" | 4.97 | MC |
| SRR1761782 | leaf | "wild_type,control,1" | 4.97 | MC |
| SRR1761530 | leaf | control | 4.97 | MC |
| SRR504365 | leaf | wt | 3.01 | MC |
| SRR6417964 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 2.50 | MC |
| SRR6417965 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 3.48 | MC |
| SRR6417966 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 2.49 | MC |
| SRR6417967 | leaf | H2O_control | 1.27 | MC |
| SRR6417968 | leaf | H2O_control | 1.99 | MC |
| SRR6417969 | leaf | H2O_control | 2.97 | MC |
| SRR3209769 | leaf | Watered;Long_Day | 0.64 | MC |
| SRR3209770 | leaf | Watered;Long_Day | 0.64 | MC |
| SRR3209773 | leaf | Watered;Short_Day | 0.62 | MC |
| SRR3209774 | leaf | Watered;Short_Day | 1.30 | MC |
| SRR3209777 | leaf | Watered;Long_Day | 2.42 | MC |
| SRR3209779 | leaf | Watered;Short_Day | 0.98 | MC |
| SRR6502085 | leaf | 100 mM NaCl | 3.07 | MC |
| SRR6502086 | leaf | 100 mM NaCl | 3.91 | MC |
| SRR6502088 | leaf | control | 1.52 | MC |
| SRR6502089 | leaf | control | 2.54 | MC |
| SRR6502090 | leaf | control | 2.40 | MC |
| SRR6502097 | leaf | 100 mM NaCl | 2.03 | MC |
| SRR6502098 | leaf | 100 mM NaCl | 1.79 | MC |
| SRR6502099 | leaf | 100 mM NaCl | 2.77 | MC |
| SRR6502100 | leaf | control | 3.36 | MC |
| SRR6502101 | leaf | control | 2.57 | MC |
| SRR6502102 | leaf | control | 0.94 | MC |
| SRR5856927 | leaf | control | 2.28 | MC |
| SRR5856928 | leaf | control | 1.75 | MC |
| SRR5856929 | leaf | control | 1.59 | MC |
| SRR5856932 | leaf | salt | 1.92 | MC |
| SRR5856933 | leaf | control | 2.18 | MC |
| SRR5856934 | leaf | control | 2.08 | MC |
| SRR5856935 | leaf | control | 1.95 | MC |
| SRR5856936 | leaf | salt | 1.08 | MC |
| SRR8582889 | panicle | AM | 0.73 | MC |
| SRR8582890 | panicle | AM | 1.19 | MC |
| SRR8582893 | panicle | PM | 3.40 | MC |
| SRR5110429 | panicle | Dawn | 3.08 | MC |
| SRR5110430 | panicle | Dawn | 2.48 | MC |
| SRR5110431 | panicle | Dawn | 2.86 | MC |
| SRR5110432 | panicle | Dawn | 2.53 | MC |
| SRR4947496 | root | control | 4.34 | MC |
| SRR5110433 | panicle | Dawn + 3.5h | 4.05 | MC |
| SRR5110434 | panicle | Dawn + 3.5h | 2.41 | MC |
| SRR5110436 | panicle | Dawn + 3.5h | 3.66 | MC |
| SRR5110439 | panicle | Dawn + 7h | 2.60 | MC |
| SRR5110449 | panicle | Dawn + 14h | 5.80 | MC |
| SRR5110450 | panicle | Dawn + 14h | 4.25 | MC |
| SRR5110456 | panicle | Dawn + 17.5h | 4.11 | MC |
| SRR5110458 | panicle | Dawn + 21h | 1.95 | MC |
| SRR5110459 | panicle | Dawn + 21h | 2.92 | MC |
| SRR5110460 | panicle | Dawn + 21h | 1.65 | MC |
| SRR1633182 | panicle | WT | 4.69 | MC |
| SRR1633185 | panicle | WT | 3.76 | MC |
| SRR5126147 | root | "mock,1_day" | 3.64 | MC |
| SRR5126148 | root | "mock,1_day" | 3.04 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 4.70 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 4.64 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 2.27 | MC |
| SRR5126153 | root | "mock,7_days" | 4.11 | MC |
| SRR5126155 | root | "mock,7_days" | 3.25 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 4.89 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 4.78 | MC |
| SRR5126165 | root | "mock,14_days" | 4.05 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 3.85 | MC |
| SRR3472897 | root | nontransgenic_rice_plant | 1.96 | MC |
| SRR3472900 | root | nontransgenic_rice_plant | 2.46 | MC |
| SRR4947478 | root | control | 4.31 | MC |
| SRR4947479 | root | control | 2.58 | MC |
| SRR4947483 | root | Al | 3.86 | MC |
| SRR4947485 | root | Al | 4.81 | MC |
| SRR4947487 | root | control | 4.15 | MC |
| SRR4947490 | root | Al | 4.28 | MC |
| SRR4947491 | root | Al | 4.50 | MC |
| SRR4947492 | root | Al | 2.37 | MC |
| SRR4947493 | root | Al | 2.62 | MC |
| SRR4947494 | root | control | 3.94 | MC |
| SRR4947497 | root | control | 4.76 | MC |
| SRR4947498 | root | Al | 4.43 | MC |
| SRR4947499 | root | Al | 4.08 | MC |
| SRR4947500 | root | Al | 4.80 | MC |
| SRR4947501 | root | Al | 5.39 | MC |
| SRR4947502 | root | control | 2.67 | MC |
| SRR4947503 | root | control | 4.24 | MC |
| SRR4947504 | root | control | 3.68 | MC |
| SRR4947505 | root | control | 4.78 | MC |
| SRR4947507 | root | Al | 2.70 | MC |
| SRR4947508 | root | Al | 3.99 | MC |
| SRR4947509 | root | Al | 4.27 | MC |
| SRR6502091 | root | 100 mM NaCl | 2.47 | MC |
| SRR6502092 | root | 100 mM NaCl | 3.37 | MC |
| SRR6502093 | root | 100 mM NaCl | 1.62 | MC |
| SRR6502094 | root | control | 3.81 | MC |
| SRR6502095 | root | control | 3.38 | MC |
| SRR6502096 | root | control | 2.98 | MC |
| SRR6502103 | root | 100 mM NaCl | 3.77 | MC |
| SRR6502104 | root | 100 mM NaCl | 4.50 | MC |
| SRR6502106 | root | control | 3.02 | MC |
| SRR6502107 | root | control | 2.57 | MC |
| SRR6502108 | root | control | 2.51 | MC |
| SRR1740434 | root_differentiation_zone | wt | 2.52 | MC |
| SRR1740435 | root_differentiation_zone | wt | 1.29 | MC |
| SRR1740436 | root_differentiation_zone | wt | 1.39 | MC |
| SRR1740432 | root_elongation_zone | wt | 0.39 | MC |
| SRR1740433 | root_elongation_zone | wt | 0.66 | MC |
| SRR1740428 | root_meristematic_zone | wt | 0.69 | MC |
| SRR1740429 | root_meristematic_zone | wt | 1.35 | MC |
| SRR1740430 | root_meristematic_zone | wt | 0.86 | MC |
| SRR3098741 | seedling | wt | 2.22 | MC |
| SRR2857719 | seedling | drought_stress_0h | 3.05 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 10.11 | MC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 4.98 | MC |
| SRR5052708 | shoot_apical_meristem | 0_days_after_shift | 3.78 | MC |
| SRR5052709 | shoot_apical_meristem | 0_days_after_shift | 2.36 | MC |
| SRR5052710 | shoot_apical_meristem | 0_days_after_shift | 4.46 | MC |
| SRR5052711 | shoot_apical_meristem | 4_days_after_shift | 4.75 | MC |
| SRR5052713 | shoot_apical_meristem | 4_days_after_shift | 7.11 | MC |
| SRR5052714 | shoot_apical_meristem | 4_days_after_shift | 2.52 | MC |
| SRR5052716 | shoot_apical_meristem | 8_days_after_shift | 2.76 | MC |
| SRR5052719 | shoot_apical_meristem | 8_days_after_shift | 4.44 | MC |
| SRR5052720 | shoot_apical_meristem | 8_days_after_shift | 2.74 | MC |
| SRR5052721 | shoot_apical_meristem | 12_days_after_shift | 4.53 | MC |
| SRR5052722 | shoot_apical_meristem | 12_days_after_shift | 3.91 | MC |
| SRR5052723 | shoot_apical_meristem | 12_days_after_shift | 2.83 | MC |
| SRR5052724 | shoot_apical_meristem | 0_days_after_shift | 2.08 | MC |
| SRR5052725 | shoot_apical_meristem | 0_days_after_shift | 2.46 | MC |
| SRR5052726 | shoot_apical_meristem | 0_days_after_shift | 2.66 | MC |
| SRR5052727 | shoot_apical_meristem | 4_days_after_shift | 3.28 | MC |
| SRR5052728 | shoot_apical_meristem | 4_days_after_shift | 3.64 | MC |
| SRR5052730 | shoot_apical_meristem | 4_days_after_shift | 3.97 | MC |
| SRR5052731 | shoot_apical_meristem | 8_days_after_shift | 3.47 | MC |
| SRR5052732 | shoot_apical_meristem | 8_days_after_shift | 4.50 | MC |
| SRR5052733 | shoot_apical_meristem | 8_days_after_shift | 4.16 | MC |
| SRR5052734 | shoot_apical_meristem | 12_days_after_shift | 3.92 | MC |
| SRR5052735 | shoot_apical_meristem | 12_days_after_shift | 6.01 | MC |
| SRR1617549 | shoot_apical_meristem | no collect | 4.32 | MC |
| SRR1617550 | shoot_apical_meristem | no collect | 2.72 | MC |
| SRR1617553 | shoot_apical_meristem | no collect | 7.35 | MC |
| SRR1617554 | shoot_apical_meristem | no collect | 6.46 | MC |
| SRR1617556 | shoot_apical_meristem | no collect | 6.03 | MC |
| SRR1617557 | shoot_apical_meristem | no collect | 6.24 | MC |
| SRR1617558 | shoot_apical_meristem | no collect | 5.88 | MC |
| SRR1617559 | shoot_apical_meristem | no collect | 5.49 | MC |