| SRR4457249 | 2nd_leaf | DAH4 | 2.83 | MC |
| SRR4457250 | 2nd_leaf | DAH4 | 2.03 | MC |
| SRR4457251 | 2nd_leaf | DAH4 | 1.63 | MC |
| SRR4457252 | 2nd_leaf | DAH12 | 2.79 | MC |
| SRR4457256 | 2nd_leaf | DAH20 | 1.78 | MC |
| SRR4457257 | 2nd_leaf | DAH20 | 4.13 | MC |
| SRR4457259 | 2nd_leaf | DAH28 | 3.39 | MC |
| SRR4457260 | 2nd_leaf | DAH28 | 2.93 | MC |
| SRR4457261 | 2nd_leaf | DAH36 | 4.66 | MC |
| SRR4457263 | 2nd_leaf | DAH36 | 2.70 | MC |
| SRR4457264 | 2nd_leaf | DAH44 | 4.04 | MC |
| SRR4457265 | 2nd_leaf | DAH44 | 2.34 | MC |
| SRR4457266 | 2nd_leaf | DAH44 | 3.86 | MC |
| SRR3745125 | anther | wt | 1.36 | MC |
| SRR3745126 | anther | wt | 1.25 | MC |
| SRR3745127 | anther | wt | 0.59 | MC |
| SRR358795 | callus | wt | 5.63 | MC |
| SRR358796 | callus | wt | 4.86 | MC |
| SRR358797 | callus | wt | 4.25 | MC |
| SRR358798 | callus | wt | 4.12 | MC |
| SRR6320473 | carpel | wt | 2.69 | MC |
| SRR5560727 | caryopsis | wild_type | 3.89 | MC |
| SRR7265410 | coleoptile | 3dN | 3.20 | MC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 1.89 | MC |
| SRR4104637 | crown | "Zn_deficiency,8_days_of_treatment" | 3.18 | MC |
| SRR4104640 | crown | "Zn_deficiency,8_days_of_treatment" | 2.85 | MC |
| SRR4104641 | crown | "Zn_deficiency,8_days_of_treatment" | 2.28 | MC |
| SRR7265373 | embryo | dry seed 0 h | 0.91 | MC |
| SRR7265374 | embryo | dry seed 0 h | 0.58 | MC |
| SRR7265375 | embryo | dry seed 0 h | 0.32 | MC |
| SRR7265376 | embryo | 1hA | 0.80 | MC |
| SRR7265377 | embryo | 1hA | 0.72 | MC |
| SRR7265378 | embryo | 1hA | 0.89 | MC |
| SRR7265379 | embryo | 1hN | 0.82 | MC |
| SRR7265380 | embryo | 1hN | 0.71 | MC |
| SRR7265381 | embryo | 1hN | 0.77 | MC |
| SRR7265382 | embryo | 3hA | 1.61 | MC |
| SRR7265383 | embryo | 3hA | 1.10 | MC |
| SRR7265384 | embryo | 3hA | 1.26 | MC |
| SRR7265385 | embryo | 3hN | 0.87 | MC |
| SRR7265386 | embryo | 3hN | 0.69 | MC |
| SRR7265387 | embryo | 3hN | 0.68 | MC |
| SRR7265388 | embryo | 12hA | 3.34 | MC |
| SRR7265389 | embryo | 12hA | 3.95 | MC |
| SRR7265390 | embryo | 12hA | 3.76 | MC |
| SRR7265391 | embryo | 12hN | 3.47 | MC |
| SRR7265392 | embryo | 12hN | 3.61 | MC |
| SRR7265393 | embryo | 12hN | 4.11 | MC |
| SRR7265394 | embryo | 24hA | 4.06 | MC |
| SRR7265395 | embryo | 24hA | 4.67 | MC |
| SRR7265396 | embryo | 24hA | 4.69 | MC |
| SRR7265397 | embryo | 24hN | 3.31 | MC |
| SRR7265398 | embryo | 24hN | 4.08 | MC |
| SRR7265399 | embryo | 24hN | 3.65 | MC |
| SRR2338866 | endosprem | control | 2.94 | MC |
| SRR2338868 | endosprem | high_temperature | 1.34 | MC |
| SRR2338869 | endosprem | high_temperature | 1.89 | MC |
| SRR4457231 | flag_leaf | DAH4 | 0.75 | MC |
| SRR4457232 | flag_leaf | DAH4 | 1.45 | MC |
| SRR4457233 | flag_leaf | DAH4 | 1.45 | MC |
| SRR4457238 | flag_leaf | DAH20 | 3.16 | MC |
| SRR4457239 | flag_leaf | DAH20 | 3.89 | MC |
| SRR4457240 | flag_leaf | DAH28 | 3.23 | MC |
| SRR4457241 | flag_leaf | DAH28 | 3.28 | MC |
| SRR4457242 | flag_leaf | DAH28 | 3.54 | MC |
| SRR4457243 | flag_leaf | DAH36 | 3.19 | MC |
| SRR4457244 | flag_leaf | DAH36 | 3.67 | MC |
| SRR4457246 | flag_leaf | DAH44 | 3.39 | MC |
| SRR4457247 | flag_leaf | DAH44 | 3.96 | MC |
| SRR4457248 | flag_leaf | DAH44 | 4.08 | MC |
| SRR1213690 | flower | wt(flower buds) | 2.65 | MC |
| SRR1213691 | flower | wt | 2.27 | MC |
| SRR8060835 | leaf | wild_type | 1.45 | MC |
| SRR8060836 | leaf | wild_type | 0.59 | MC |
| SRR8060837 | leaf | wild_type | 0.59 | MC |
| SRR8240824 | leaf | wild_type | 2.19 | MC |
| SRR8240825 | leaf | wild_type | 0.84 | MC |
| SRR2922623 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 2.52 | MC |
| SRR2922624 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 5.08 | MC |
| SRR1952778 | leaf | 48_hrs_after_inoculation_with_BLS256 | 2.36 | MC |
| SRR1952780 | leaf | 48_hrs_after_inoculation_with_BLS256 | 2.60 | MC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 3.71 | MC |
| SRR1952782 | leaf | 48_hrs_after_inoculation_with_BLS279 | 1.66 | MC |
| SRR1952783 | leaf | 48_hrs_after_inoculation_with_BLS279 | 2.20 | MC |
| SRR1952785 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 4.07 | MC |
| SRR1952786 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 2.01 | MC |
| SRR1952787 | leaf | 48_hrs_after_inoculation_with_B8_12 | 3.71 | MC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 2.48 | MC |
| SRR1952790 | leaf | 48_hrs_after_inoculation_with_L8 | 2.71 | MC |
| SRR1952791 | leaf | 48_hrs_after_inoculation_with_L8 | 2.24 | MC |
| SRR1952792 | leaf | 48_hrs_after_inoculation_with_L8 | 1.92 | MC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 3.93 | MC |
| SRR1952794 | leaf | 48_hrs_after_inoculation_with_RS105 | 3.03 | MC |
| SRR1952795 | leaf | 48_hrs_after_inoculation_with_RS105 | 1.45 | MC |
| SRR1952796 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 1.27 | MC |
| SRR1952797 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 2.47 | MC |
| SRR1952798 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 1.51 | MC |
| SRR1952799 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 3.65 | MC |
| SRR1952800 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 5.38 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 2.09 | MC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 3.12 | MC |
| SRR1952803 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 2.97 | MC |
| SRR1952804 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 1.82 | MC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 4.15 | MC |
| SRR1952807 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 2.33 | MC |
| SRR1952808 | leaf | 48_hrs_after_mock_inoculation | 4.43 | MC |
| SRR1952809 | leaf | 48_hrs_after_mock_inoculation | 4.34 | MC |
| SRR1952810 | leaf | 48_hrs_after_mock_inoculation | 2.23 | MC |
| SRR1761788 | leaf | "wild_type,drought,2" | 2.51 | MC |
| SRR1761789 | leaf | "wild_type,drought,2" | 2.78 | MC |
| SRR1761790 | leaf | "wild_type,control,2" | 4.82 | MC |
| SRR1761791 | leaf | "wild_type,control,2" | 5.80 | MC |
| SRR1761780 | leaf | "wild_type,drought,1" | 2.51 | MC |
| SRR1761781 | leaf | "wild_type,drought,1" | 2.78 | MC |
| SRR1761782 | leaf | "wild_type,control,1" | 4.82 | MC |
| SRR1761783 | leaf | "wild_type,control,1" | 5.80 | MC |
| SRR1761528 | leaf | drought | 2.51 | MC |
| SRR1761529 | leaf | drought | 2.78 | MC |
| SRR1761530 | leaf | control | 4.82 | MC |
| SRR1761531 | leaf | control | 5.80 | MC |
| SRR6417967 | leaf | H2O_control | 3.62 | MC |
| SRR3209770 | leaf | Watered;Long_Day | 2.97 | MC |
| SRR3209771 | leaf | Drought;Long_Day | 1.30 | MC |
| SRR3209772 | leaf | Drought;Long_Day | 3.83 | MC |
| SRR3209775 | leaf | Drought;Short_Day | 1.67 | MC |
| SRR3209776 | leaf | Drought;Short_Day | 2.00 | MC |
| SRR3209777 | leaf | Watered;Long_Day | 1.32 | MC |
| SRR3209778 | leaf | Drought;Long_Day | 2.77 | MC |
| SRR3209779 | leaf | Watered;Short_Day | 1.74 | MC |
| SRR3209780 | leaf | Drought;Short_Day | 4.15 | MC |
| SRR8611900 | leaf | Non-inoculated | 2.79 | MC |
| SRR8611901 | leaf | Non-inoculated | 2.39 | MC |
| SRR8611902 | leaf | Non-inoculated | 3.54 | MC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 2.24 | MC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 2.00 | MC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 1.17 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 2.71 | MC |
| SRR1213692 | leaf | wt | 1.96 | MC |
| SRR1213693 | leaf | wt | 1.24 | MC |
| SRR6502085 | leaf | 100 mM NaCl | 3.73 | MC |
| SRR6502086 | leaf | 100 mM NaCl | 3.30 | MC |
| SRR6502088 | leaf | control | 2.00 | MC |
| SRR6502097 | leaf | 100 mM NaCl | 2.11 | MC |
| SRR6502098 | leaf | 100 mM NaCl | 3.91 | MC |
| SRR6502101 | leaf | control | 2.93 | MC |
| SRR6053393 | leaf | ethanol solvent (untreated control) | 6.47 | MC |
| SRR6053394 | leaf | ethanol solvent (untreated control) | 1.32 | MC |
| SRR6053398 | leaf | Paclobutrazol (PB) | 4.13 | MC |
| SRR6053399 | leaf | Paclobutrazol (PB) | 3.51 | MC |
| SRR6168973 | leaf | none (control) | 2.64 | MC |
| SRR6168974 | leaf | none (control) | 1.08 | MC |
| SRR6168975 | leaf | none (control) | 4.90 | MC |
| SRR6168976 | leaf | 0.5% Na2CO3 solution for 36h | 3.62 | MC |
| SRR6168978 | leaf | 0.5% Na2CO3 solution for 36h | 2.41 | MC |
| SRR6168979 | leaf | none (control) | 0.91 | MC |
| SRR6168980 | leaf | none (control) | 0.99 | MC |
| SRR6168981 | leaf | none (control) | 0.89 | MC |
| SRR6168982 | leaf | 0.5% Na2CO3 solution for 36h | 1.38 | MC |
| SRR6168983 | leaf | 0.5% Na2CO3 solution for 36h | 1.27 | MC |
| SRR6168984 | leaf | 0.5% Na2CO3 solution for 36h | 1.72 | MC |
| SRR8582888 | panicle | AM | 2.30 | MC |
| SRR8582889 | panicle | AM | 1.25 | MC |
| SRR8582890 | panicle | AM | 2.43 | MC |
| SRR8582891 | panicle | PM | 1.48 | MC |
| SRR8582892 | panicle | PM | 1.62 | MC |
| SRR8582893 | panicle | PM | 1.30 | MC |
| SRR5110432 | panicle | Dawn | 3.59 | MC |
| SRR5110441 | panicle | Dawn + 10.5h | 5.04 | MC |
| SRR5110445 | panicle | Dusk | 3.50 | MC |
| SRR5110449 | panicle | Dawn + 14h | 3.47 | MC |
| SRR5110452 | panicle | Dawn + 14h | 3.71 | MC |
| SRR5110456 | panicle | Dawn + 17.5h | 4.96 | MC |
| SRR1213696 | endosprem | wt(milk grains) | 1.51 | MC |
| SRR1633182 | panicle | WT | 3.99 | MC |
| SRR1213694 | root | wt | 2.86 | MC |
| SRR4947478 | root | control | 4.13 | MC |
| SRR4947491 | root | Al | 3.50 | MC |
| SRR4947494 | root | control | 3.43 | MC |
| SRR1740434 | root_differentiation_zone | wt | 2.83 | MC |
| SRR1740433 | root_elongation_zone | wt | 2.61 | MC |
| SRR1740428 | root_meristematic_zone | wt | 3.76 | MC |
| SRR1740429 | root_meristematic_zone | wt | 1.96 | MC |
| SRR1740430 | root_meristematic_zone | wt | 2.34 | MC |
| SRR6441554 | seedling | wild_type | 1.58 | MC |
| SRR6441555 | seedling | wild_type | 2.57 | MC |
| SRR2154086 | seedling | wt | 4.35 | MC |
| SRR2154085 | seedling | wt | 3.55 | MC |
| SRR3098741 | seedling | wt | 0.92 | MC |
| SRR3098742 | seedling | wt | 1.34 | MC |
| SRR3098743 | seedling | wt | 1.18 | MC |
| SRR2857720 | seedling | drought_stress_1h | 2.97 | MC |
| SRR2857721 | seedling | drought_stress_6h | 1.70 | MC |
| SRR1944583 | seedling | no_treatment | 2.02 | MC |
| SRR358791 | seedling | wt | 6.54 | MC |
| SRR358792 | seedling | wt | 6.67 | MC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 5.70 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 9.74 | MC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 9.79 | MC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 7.34 | MC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 4.68 | MC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 2.30 | MC |
| SRR5796941 | shoot | "Control,22C for 10 min" | 2.04 | MC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 1.88 | MC |
| SRR5796943 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 1.33 | MC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 3.06 | MC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 1.00 | MC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 1.65 | MC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 2.19 | MC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 2.03 | MC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 2.87 | MC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 2.14 | MC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 2.73 | MC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 2.06 | MC |
| SRR5796954 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 0.94 | MC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 1.99 | MC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 3.02 | MC |
| SRR5796958 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 1.54 | MC |
| SRR5796959 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 2.39 | MC |
| SRR5052708 | shoot_apical_meristem | 0_days_after_shift | 6.22 | MC |
| SRR5052721 | shoot_apical_meristem | 12_days_after_shift | 5.93 | MC |
| SRR7760291 | spikelet | control condition (29C) for 7 hrs | 3.03 | MC |
| SRR7760292 | spikelet | control condition (29C) for 7 hrs | 2.41 | MC |
| SRR7760293 | spikelet | control condition (29C) for 7 hrs | 2.94 | MC |
| SRR7760295 | spikelet | high temperature treatment (38C) for 7 hrs | 2.37 | MC |
| SRR7760296 | spikelet | high temperature treatment (38C) for 7 hrs | 1.80 | MC |
| SRR7760298 | spikelet | control condition (29C) for 7 hrs | 1.64 | MC |
| SRR7760300 | spikelet | high temperature treatment (38C) for 7 hrs | 1.75 | MC |
| SRR7760301 | spikelet | high temperature treatment (38C) for 7 hrs | 1.79 | MC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 1.09 | MC |