| SRR4457249 | 2nd_leaf | DAH4 | 2.61 | MC |
| SRR4457251 | 2nd_leaf | DAH4 | 0.95 | MC |
| SRR4457252 | 2nd_leaf | DAH12 | 0.26 | MC |
| SRR4457254 | 2nd_leaf | DAH12 | 2.26 | MC |
| SRR4457255 | 2nd_leaf | DAH20 | 2.96 | MC |
| SRR4457256 | 2nd_leaf | DAH20 | 4.32 | MC |
| SRR4457257 | 2nd_leaf | DAH20 | 2.14 | MC |
| SRR4457258 | 2nd_leaf | DAH28 | 3.69 | MC |
| SRR4457259 | 2nd_leaf | DAH28 | 0.62 | MC |
| SRR3745126 | anther | wt | 4.36 | MC |
| SRR3745127 | anther | wt | 3.42 | MC |
| SRR358796 | callus | wt | 8.29 | MC |
| SRR5560728 | caryopsis | wild_type | 0.49 | MC |
| SRR5560729 | caryopsis | wild_type | 1.56 | MC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 0.46 | MC |
| SRR7265411 | coleoptile | 3dN | 0.51 | MC |
| SRR4104637 | crown | "Zn_deficiency,8_days_of_treatment" | 0.37 | MC |
| SRR4104638 | crown | "Zn_deficiency,8_days_of_treatment" | 1.76 | MC |
| SRR4104641 | crown | "Zn_deficiency,8_days_of_treatment" | 1.13 | MC |
| SRR4104644 | crown | "Zn_Efficient,8_days_of_treatment" | 1.58 | MC |
| SRR7265392 | embryo | 12hN | 0.70 | MC |
| SRR7265393 | embryo | 12hN | 2.29 | MC |
| SRR7265395 | embryo | 24hA | 0.60 | MC |
| SRR4457231 | flag_leaf | DAH4 | 3.10 | MC |
| SRR4457233 | flag_leaf | DAH4 | 2.55 | MC |
| SRR4457239 | flag_leaf | DAH20 | 0.55 | MC |
| SRR4457242 | flag_leaf | DAH28 | 1.34 | MC |
| SRR4457243 | flag_leaf | DAH36 | 0.46 | MC |
| SRR4457245 | flag_leaf | DAH36 | 0.31 | MC |
| SRR4457246 | flag_leaf | DAH44 | 1.81 | MC |
| SRR4457247 | flag_leaf | DAH44 | 1.95 | MC |
| SRR4457248 | flag_leaf | DAH44 | 0.72 | MC |
| SRR1213690 | flower | wt(flower buds) | 0.72 | MC |
| SRR1213691 | flower | wt | 0.50 | MC |
| SRR8060837 | leaf | wild_type | 0.54 | MC |
| SRR8240824 | leaf | wild_type | 0.40 | MC |
| SRR8240825 | leaf | wild_type | 0.84 | MC |
| SRR1952785 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 0.83 | MC |
| SRR3209769 | leaf | Watered;Long_Day | 0.73 | MC |
| SRR3209774 | leaf | Watered;Short_Day | 3.36 | MC |
| SRR3209778 | leaf | Drought;Long_Day | 0.63 | MC |
| SRR8611902 | leaf | Non-inoculated | 0.21 | MC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 0.40 | MC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 0.32 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 0.23 | MC |
| SRR5856929 | leaf | control | 0.30 | MC |
| SRR5856932 | leaf | salt | 0.66 | MC |
| SRR5856933 | leaf | control | 0.53 | MC |
| SRR5856936 | leaf | salt | 0.37 | MC |
| SRR5856938 | leaf | salt | 0.59 | MC |
| SRR6053393 | leaf | ethanol solvent (untreated control) | 5.99 | MC |
| SRR6053394 | leaf | ethanol solvent (untreated control) | 6.15 | MC |
| SRR6053395 | leaf | gibberellic acid (GA) | 4.29 | MC |
| SRR6053396 | leaf | gibberellic acid (GA) | 3.82 | MC |
| SRR6053397 | leaf | gibberellic acid (GA) | 7.05 | MC |
| SRR6168975 | leaf | none (control) | 2.86 | MC |
| SRR6168976 | leaf | 0.5% Na2CO3 solution for 36h | 0.42 | MC |
| SRR6168978 | leaf | 0.5% Na2CO3 solution for 36h | 2.32 | MC |
| SRR6168979 | leaf | none (control) | 0.71 | MC |
| SRR6168980 | leaf | none (control) | 0.24 | MC |
| SRR6168981 | leaf | none (control) | 0.25 | MC |
| SRR8582891 | panicle | PM | 0.44 | MC |
| SRR5110446 | panicle | Dusk | 1.48 | MC |
| SRR5110453 | panicle | Dawn + 17.5h | 1.74 | MC |
| SRR5110456 | panicle | Dawn + 17.5h | 1.36 | MC |
| SRR5110458 | panicle | Dawn + 21h | 2.81 | MC |
| SRR1213696 | endosprem | wt(milk grains) | 0.68 | MC |
| SRR5126147 | root | "mock,1_day" | 1.04 | MC |
| SRR5126149 | root | "mock,1_day" | 4.05 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 1.13 | MC |
| SRR5126157 | root | "mock,7_days" | 0.40 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 1.35 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 1.61 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 0.33 | MC |
| SRR1213695 | root | wt | 0.67 | MC |
| SRR4947482 | root | Al | 0.41 | MC |
| SRR4947493 | root | Al | 0.66 | MC |
| SRR1740435 | root_differentiation_zone | wt | 0.39 | MC |
| SRR2154082 | seedling | wt | 1.02 | MC |
| SRR2154084 | seedling | wt | 0.86 | MC |
| SRR3098741 | seedling | wt | 0.31 | MC |
| SRR3098742 | seedling | wt | 0.30 | MC |
| SRR3098743 | seedling | wt | 0.53 | MC |
| SRR2857719 | seedling | drought_stress_0h | 0.76 | MC |
| SRR2857721 | seedling | drought_stress_6h | 0.37 | MC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 4.71 | MC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 6.81 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 7.06 | MC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 6.32 | MC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 5.15 | MC |
| SRR4841743 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 5.81 | MC |
| SRR5796943 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 1.15 | MC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 2.89 | MC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 1.73 | MC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 1.06 | MC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 1.70 | MC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 0.42 | MC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 1.85 | MC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 0.45 | MC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 0.48 | MC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 1.68 | MC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 1.49 | MC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 1.02 | MC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 1.66 | MC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 2.21 | MC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 3.20 | MC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 3.89 | MC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 3.44 | MC |
| SRR7760298 | spikelet | control condition (29C) for 7 hrs | 0.35 | MC |
| SRR7760301 | spikelet | high temperature treatment (38C) for 7 hrs | 1.20 | MC |