| SRR4457249 | 2nd_leaf | DAH4 | 5.02 | MC |
| SRR4457250 | 2nd_leaf | DAH4 | 3.75 | MC |
| SRR4457251 | 2nd_leaf | DAH4 | 3.64 | MC |
| SRR4457255 | 2nd_leaf | DAH20 | 3.88 | MC |
| SRR4457256 | 2nd_leaf | DAH20 | 2.95 | MC |
| SRR4457257 | 2nd_leaf | DAH20 | 4.40 | MC |
| SRR4457258 | 2nd_leaf | DAH28 | 2.55 | MC |
| SRR4457259 | 2nd_leaf | DAH28 | 2.74 | MC |
| SRR4457260 | 2nd_leaf | DAH28 | 1.05 | MC |
| SRR4457261 | 2nd_leaf | DAH36 | 1.92 | MC |
| SRR4457263 | 2nd_leaf | DAH36 | 1.56 | MC |
| SRR4457264 | 2nd_leaf | DAH44 | 1.83 | MC |
| SRR4457265 | 2nd_leaf | DAH44 | 0.77 | MC |
| SRR4457266 | 2nd_leaf | DAH44 | 1.03 | MC |
| SRR358795 | callus | wt | 3.95 | MC |
| SRR358797 | callus | wt | 3.52 | MC |
| SRR358798 | callus | wt | 4.53 | MC |
| SRR6320498 | carpel | wt | 3.77 | MC |
| SRR5560727 | caryopsis | wild_type | 2.89 | MC |
| SRR5560728 | caryopsis | wild_type | 4.97 | MC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 3.48 | MC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 3.08 | MC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 2.10 | MC |
| SRR4947495 | root | control | 3.81 | MC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 3.45 | MC |
| SRR7265408 | coleoptile | 3dA | 2.16 | MC |
| SRR7265412 | coleoptile | 4dA | 1.78 | MC |
| SRR7265414 | coleoptile | 4dA | 2.13 | MC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 3.29 | MC |
| SRR4104637 | crown | "Zn_deficiency,8_days_of_treatment" | 2.89 | MC |
| SRR4104638 | crown | "Zn_deficiency,8_days_of_treatment" | 2.70 | MC |
| SRR4104647 | crown | "Zn_Efficient,8_days_of_treatment" | 1.90 | MC |
| SRR4104640 | crown | "Zn_deficiency,8_days_of_treatment" | 2.53 | MC |
| SRR4104641 | crown | "Zn_deficiency,8_days_of_treatment" | 1.70 | MC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 1.79 | MC |
| SRR4104643 | crown | "Zn_Efficient,8_days_of_treatment" | 1.82 | MC |
| SRR4104644 | crown | "Zn_Efficient,8_days_of_treatment" | 2.68 | MC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 1.72 | MC |
| SRR4104646 | crown | "Zn_Efficient,8_days_of_treatment" | 3.78 | MC |
| SRR7265383 | embryo | 3hA | 4.48 | MC |
| SRR7265385 | embryo | 3hN | 3.08 | MC |
| SRR2338866 | endosprem | control | 1.14 | MC |
| SRR2338868 | endosprem | high_temperature | 1.65 | MC |
| SRR2338869 | endosprem | high_temperature | 1.17 | MC |
| SRR976168 | flag_leaf | wild_type | 1.02 | MC |
| SRR4457231 | flag_leaf | DAH4 | 2.38 | MC |
| SRR4457236 | flag_leaf | DAH12 | 3.41 | MC |
| SRR4457237 | flag_leaf | DAH20 | 2.54 | MC |
| SRR4457238 | flag_leaf | DAH20 | 2.60 | MC |
| SRR4457239 | flag_leaf | DAH20 | 2.72 | MC |
| SRR4457240 | flag_leaf | DAH28 | 1.47 | MC |
| SRR4457241 | flag_leaf | DAH28 | 1.49 | MC |
| SRR4457242 | flag_leaf | DAH28 | 1.39 | MC |
| SRR4457246 | flag_leaf | DAH44 | 2.80 | MC |
| SRR4457247 | flag_leaf | DAH44 | 3.36 | MC |
| SRR4457248 | flag_leaf | DAH44 | 3.26 | MC |
| SRR8060835 | leaf | wild_type | 2.07 | MC |
| SRR8060836 | leaf | wild_type | 2.32 | MC |
| SRR8060837 | leaf | wild_type | 1.81 | MC |
| SRR8240824 | leaf | wild_type | 1.13 | MC |
| SRR8240825 | leaf | wild_type | 1.58 | MC |
| SRR8240826 | leaf | wild_type | 1.18 | MC |
| SRR8240818 | leaf | wild_type | 0.65 | MC |
| SRR8240819 | leaf | wild_type | 1.94 | MC |
| SRR8240820 | leaf | wild_type | 1.94 | MC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 4.10 | MC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 4.21 | MC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 2.54 | MC |
| SRR2922623 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 5.66 | MC |
| SRR1952779 | leaf | 48_hrs_after_inoculation_with_BLS256 | 4.89 | MC |
| SRR1952780 | leaf | 48_hrs_after_inoculation_with_BLS256 | 3.22 | MC |
| SRR1952782 | leaf | 48_hrs_after_inoculation_with_BLS279 | 6.01 | MC |
| SRR1952785 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 6.47 | MC |
| SRR1952791 | leaf | 48_hrs_after_inoculation_with_L8 | 3.54 | MC |
| SRR1952798 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 6.34 | MC |
| SRR1952799 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 6.93 | MC |
| SRR1952800 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 6.40 | MC |
| SRR1952807 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 5.10 | MC |
| SRR1761788 | leaf | "wild_type,drought,2" | 4.61 | MC |
| SRR1761789 | leaf | "wild_type,drought,2" | 4.15 | MC |
| SRR1761780 | leaf | "wild_type,drought,1" | 4.61 | MC |
| SRR1761781 | leaf | "wild_type,drought,1" | 4.15 | MC |
| SRR1761528 | leaf | drought | 4.61 | MC |
| SRR1761529 | leaf | drought | 4.15 | MC |
| SRR6417964 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 2.23 | MC |
| SRR6417965 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 1.93 | MC |
| SRR6417966 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 1.55 | MC |
| SRR6417967 | leaf | H2O_control | 2.06 | MC |
| SRR6417968 | leaf | H2O_control | 2.78 | MC |
| SRR6417969 | leaf | H2O_control | 1.24 | MC |
| SRR3209769 | leaf | Watered;Long_Day | 1.19 | MC |
| SRR3209770 | leaf | Watered;Long_Day | 1.33 | MC |
| SRR3209771 | leaf | Drought;Long_Day | 3.61 | MC |
| SRR3209772 | leaf | Drought;Long_Day | 3.92 | MC |
| SRR3209773 | leaf | Watered;Short_Day | 1.27 | MC |
| SRR3209774 | leaf | Watered;Short_Day | 2.08 | MC |
| SRR3209775 | leaf | Drought;Short_Day | 3.29 | MC |
| SRR3209776 | leaf | Drought;Short_Day | 3.40 | MC |
| SRR3209777 | leaf | Watered;Long_Day | 1.19 | MC |
| SRR3209779 | leaf | Watered;Short_Day | 1.46 | MC |
| SRR3209780 | leaf | Drought;Short_Day | 3.44 | MC |
| SRR8611900 | leaf | Non-inoculated | 2.36 | MC |
| SRR8611901 | leaf | Non-inoculated | 2.74 | MC |
| SRR8611902 | leaf | Non-inoculated | 2.76 | MC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 1.60 | MC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 1.83 | MC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 1.73 | MC |
| SRR1213693 | leaf | wt | 3.16 | MC |
| SRR6502085 | leaf | 100 mM NaCl | 2.71 | MC |
| SRR6502086 | leaf | 100 mM NaCl | 3.11 | MC |
| SRR6502087 | leaf | 100 mM NaCl | 4.06 | MC |
| SRR6502088 | leaf | control | 2.50 | MC |
| SRR6502089 | leaf | control | 2.73 | MC |
| SRR6502090 | leaf | control | 0.97 | MC |
| SRR6502098 | leaf | 100 mM NaCl | 2.86 | MC |
| SRR6502099 | leaf | 100 mM NaCl | 0.83 | MC |
| SRR6502100 | leaf | control | 2.29 | MC |
| SRR6502101 | leaf | control | 1.56 | MC |
| SRR6502102 | leaf | control | 3.08 | MC |
| SRR5856927 | leaf | control | 1.00 | MC |
| SRR5856928 | leaf | control | 1.25 | MC |
| SRR5856929 | leaf | control | 1.35 | MC |
| SRR5856930 | leaf | salt | 0.76 | MC |
| SRR5856931 | leaf | salt | 0.35 | MC |
| SRR5856932 | leaf | salt | 0.67 | MC |
| SRR5856933 | leaf | control | 1.54 | MC |
| SRR5856934 | leaf | control | 1.47 | MC |
| SRR5856935 | leaf | control | 1.24 | MC |
| SRR5856936 | leaf | salt | 1.06 | MC |
| SRR5856937 | leaf | salt | 0.53 | MC |
| SRR5856938 | leaf | salt | 1.02 | MC |
| SRR6053392 | leaf | ethanol solvent (untreated control) | 1.76 | MC |
| SRR6053393 | leaf | ethanol solvent (untreated control) | 4.52 | MC |
| SRR6053395 | leaf | gibberellic acid (GA) | 2.88 | MC |
| SRR6053396 | leaf | gibberellic acid (GA) | 1.92 | MC |
| SRR6053397 | leaf | gibberellic acid (GA) | 2.31 | MC |
| SRR6053398 | leaf | Paclobutrazol (PB) | 1.73 | MC |
| SRR6053399 | leaf | Paclobutrazol (PB) | 0.85 | MC |
| SRR6053400 | leaf | Paclobutrazol (PB) | 0.99 | MC |
| SRR6168973 | leaf | none (control) | 4.02 | MC |
| SRR6168974 | leaf | none (control) | 4.36 | MC |
| SRR6168975 | leaf | none (control) | 2.41 | MC |
| SRR6168977 | leaf | 0.5% Na2CO3 solution for 36h | 0.33 | MC |
| SRR6168978 | leaf | 0.5% Na2CO3 solution for 36h | 4.28 | MC |
| SRR6168979 | leaf | none (control) | 1.14 | MC |
| SRR6168980 | leaf | none (control) | 0.59 | MC |
| SRR6168981 | leaf | none (control) | 1.46 | MC |
| SRR6168982 | leaf | 0.5% Na2CO3 solution for 36h | 2.24 | MC |
| SRR6168983 | leaf | 0.5% Na2CO3 solution for 36h | 2.05 | MC |
| SRR6168984 | leaf | 0.5% Na2CO3 solution for 36h | 1.89 | MC |
| SRR8582888 | panicle | AM | 1.85 | MC |
| SRR8582889 | panicle | AM | 1.41 | MC |
| SRR5110430 | panicle | Dawn | 5.16 | MC |
| SRR5110432 | panicle | Dawn | 3.03 | MC |
| SRR4947496 | root | control | 2.07 | MC |
| SRR5110433 | panicle | Dawn + 3.5h | 1.52 | MC |
| SRR5110434 | panicle | Dawn + 3.5h | 3.70 | MC |
| SRR5110436 | panicle | Dawn + 3.5h | 3.42 | MC |
| SRR5110437 | panicle | Dawn + 7h | 3.44 | MC |
| SRR5110438 | panicle | Dawn + 7h | 4.05 | MC |
| SRR5110439 | panicle | Dawn + 7h | 5.26 | MC |
| SRR5110440 | panicle | Dawn + 7h | 5.24 | MC |
| SRR5110441 | panicle | Dawn + 10.5h | 4.84 | MC |
| SRR5110443 | panicle | Dawn + 10.5h | 3.79 | MC |
| SRR5110447 | panicle | Dusk | 3.28 | MC |
| SRR5110450 | panicle | Dawn + 14h | 4.05 | MC |
| SRR5110452 | panicle | Dawn + 14h | 5.30 | MC |
| SRR5110453 | panicle | Dawn + 17.5h | 2.56 | MC |
| SRR5110454 | panicle | Dawn + 17.5h | 3.31 | MC |
| SRR5110455 | panicle | Dawn + 17.5h | 3.19 | MC |
| SRR5110456 | panicle | Dawn + 17.5h | 4.59 | MC |
| SRR5110457 | panicle | Dawn + 21h | 3.41 | MC |
| SRR5110458 | panicle | Dawn + 21h | 2.47 | MC |
| SRR5110459 | panicle | Dawn + 21h | 2.72 | MC |
| SRR1213696 | endosprem | wt(milk grains) | 1.61 | MC |
| SRR1213697 | endosprem | wt(mature seeds) | 1.37 | MC |
| SRR1633182 | panicle | WT | 1.63 | MC |
| SRR1633185 | panicle | WT | 4.68 | MC |
| SRR5278374 | pistil | "Balilla,S1" | 2.14 | MC |
| SRR5278375 | pistil | "Balilla,S1" | 2.43 | MC |
| SRR5278376 | pistil | "Balilla,S2" | 3.09 | MC |
| SRR5278377 | pistil | "Balilla,S2" | 3.58 | MC |
| SRR5126148 | root | "mock,1_day" | 3.38 | MC |
| SRR5126157 | root | "mock,7_days" | 4.71 | MC |
| SRR5126169 | root | "mock,14_days" | 3.82 | MC |
| SRR3472897 | root | nontransgenic_rice_plant | 1.20 | MC |
| SRR3472900 | root | nontransgenic_rice_plant | 1.20 | MC |
| SRR1213694 | root | wt | 1.13 | MC |
| SRR4947478 | root | control | 3.11 | MC |
| SRR4947479 | root | control | 2.58 | MC |
| SRR4947480 | root | control | 3.05 | MC |
| SRR4947481 | root | control | 3.70 | MC |
| SRR4947483 | root | Al | 3.61 | MC |
| SRR4947484 | root | Al | 3.26 | MC |
| SRR4947485 | root | Al | 2.69 | MC |
| SRR4947487 | root | control | 2.81 | MC |
| SRR4947488 | root | control | 1.70 | MC |
| SRR4947489 | root | control | 1.71 | MC |
| SRR4947490 | root | Al | 4.24 | MC |
| SRR4947491 | root | Al | 2.66 | MC |
| SRR4947492 | root | Al | 2.58 | MC |
| SRR4947493 | root | Al | 2.49 | MC |
| SRR4947497 | root | control | 3.24 | MC |
| SRR4947498 | root | Al | 4.30 | MC |
| SRR4947499 | root | Al | 3.92 | MC |
| SRR4947500 | root | Al | 2.66 | MC |
| SRR4947502 | root | control | 4.85 | MC |
| SRR4947504 | root | control | 2.84 | MC |
| SRR4947505 | root | control | 2.97 | MC |
| SRR4947506 | root | Al | 3.57 | MC |
| SRR4947508 | root | Al | 2.90 | MC |
| SRR4947509 | root | Al | 3.15 | MC |
| SRR6502091 | root | 100 mM NaCl | 4.25 | MC |
| SRR6502092 | root | 100 mM NaCl | 3.29 | MC |
| SRR6502093 | root | 100 mM NaCl | 4.00 | MC |
| SRR6502094 | root | control | 1.89 | MC |
| SRR6502095 | root | control | 2.26 | MC |
| SRR6502096 | root | control | 2.24 | MC |
| SRR6502103 | root | 100 mM NaCl | 3.94 | MC |
| SRR6502104 | root | 100 mM NaCl | 2.64 | MC |
| SRR6502105 | root | 100 mM NaCl | 3.43 | MC |
| SRR6502106 | root | control | 2.41 | MC |
| SRR6502107 | root | control | 2.78 | MC |
| SRR6502108 | root | control | 3.95 | MC |
| SRR1740434 | root_differentiation_zone | wt | 1.38 | MC |
| SRR1740435 | root_differentiation_zone | wt | 1.48 | MC |
| SRR1740436 | root_differentiation_zone | wt | 2.26 | MC |
| SRR1740431 | root_elongation_zone | wt | 2.41 | MC |
| SRR1740433 | root_elongation_zone | wt | 2.05 | MC |
| SRR1740428 | root_meristematic_zone | wt | 2.22 | MC |
| SRR1740429 | root_meristematic_zone | wt | 3.13 | MC |
| SRR1740430 | root_meristematic_zone | wt | 3.25 | MC |
| SRR6441554 | seedling | wild_type | 2.24 | MC |
| SRR2154085 | seedling | wt | 4.31 | MC |
| SRR1944583 | seedling | no_treatment | 2.69 | MC |
| SRR358791 | seedling | wt | 3.07 | MC |
| SRR358792 | seedling | wt | 2.86 | MC |
| SRR358794 | seedling | wt | 0.78 | MC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 2.46 | MC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 4.48 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 8.39 | MC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 4.66 | MC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 3.89 | MC |
| SRR4841743 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 5.82 | MC |
| SRR3950244 | shoot | Drought_during_3_days;Fr13_inoculated | 0.96 | MC |
| SRR3950245 | shoot | Drought_during_3_days;Fr13_inoculated | 1.05 | MC |
| SRR3950246 | shoot | Drought_during_3_days;Fr13_inoculated | 1.30 | MC |
| SRR3950247 | shoot | No_DIS;Fr13_inoculated | 1.07 | MC |
| SRR3950248 | shoot | No_DIS;Fr13_inoculated | 1.12 | MC |
| SRR3950249 | shoot | No_DIS;Fr13_inoculated | 0.94 | MC |
| SRR3950251 | shoot | Drought_during_3_days;_mock_inoculated | 0.91 | MC |
| SRR3950252 | shoot | Drought_during_3_days;_mock_inoculated | 1.04 | MC |
| SRR3950253 | shoot | No_DIS;_mock_inoculated | 0.60 | MC |
| SRR3950254 | shoot | No_DIS;_mock_inoculated | 0.66 | MC |
| SRR3950255 | shoot | No_DIS;_mock_inoculated | 1.00 | MC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 3.32 | MC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 3.71 | MC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 2.16 | MC |
| SRR5796954 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 2.22 | MC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 2.22 | MC |
| SRR5796959 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 3.44 | MC |
| SRR5052708 | shoot_apical_meristem | 0_days_after_shift | 4.35 | MC |
| SRR5052709 | shoot_apical_meristem | 0_days_after_shift | 3.47 | MC |
| SRR5052710 | shoot_apical_meristem | 0_days_after_shift | 3.57 | MC |
| SRR5052711 | shoot_apical_meristem | 4_days_after_shift | 3.27 | MC |
| SRR5052713 | shoot_apical_meristem | 4_days_after_shift | 5.95 | MC |
| SRR5052714 | shoot_apical_meristem | 4_days_after_shift | 2.74 | MC |
| SRR5052716 | shoot_apical_meristem | 8_days_after_shift | 3.31 | MC |
| SRR5052719 | shoot_apical_meristem | 8_days_after_shift | 2.53 | MC |
| SRR5052720 | shoot_apical_meristem | 8_days_after_shift | 2.74 | MC |
| SRR5052721 | shoot_apical_meristem | 12_days_after_shift | 2.22 | MC |
| SRR5052722 | shoot_apical_meristem | 12_days_after_shift | 2.58 | MC |
| SRR5052723 | shoot_apical_meristem | 12_days_after_shift | 3.15 | MC |
| SRR5052724 | shoot_apical_meristem | 0_days_after_shift | 3.29 | MC |
| SRR5052725 | shoot_apical_meristem | 0_days_after_shift | 4.40 | MC |
| SRR5052726 | shoot_apical_meristem | 0_days_after_shift | 3.90 | MC |
| SRR5052727 | shoot_apical_meristem | 4_days_after_shift | 2.69 | MC |
| SRR5052728 | shoot_apical_meristem | 4_days_after_shift | 3.24 | MC |
| SRR5052730 | shoot_apical_meristem | 4_days_after_shift | 2.35 | MC |
| SRR5052731 | shoot_apical_meristem | 8_days_after_shift | 4.35 | MC |
| SRR5052732 | shoot_apical_meristem | 8_days_after_shift | 4.32 | MC |
| SRR5052733 | shoot_apical_meristem | 8_days_after_shift | 2.73 | MC |
| SRR5052734 | shoot_apical_meristem | 12_days_after_shift | 3.19 | MC |
| SRR1617549 | shoot_apical_meristem | no collect | 2.20 | MC |
| SRR1617550 | shoot_apical_meristem | no collect | 3.56 | MC |
| SRR1617553 | shoot_apical_meristem | no collect | 1.80 | MC |
| SRR1617554 | shoot_apical_meristem | no collect | 3.37 | MC |
| SRR1617556 | shoot_apical_meristem | no collect | 2.81 | MC |
| SRR1617557 | shoot_apical_meristem | no collect | 1.84 | MC |
| SRR1617558 | shoot_apical_meristem | no collect | 1.46 | MC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 3.65 | MC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 2.93 | MC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 3.70 | MC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 3.91 | MC |
| SRR7760291 | spikelet | control condition (29C) for 7 hrs | 3.01 | MC |
| SRR7760293 | spikelet | control condition (29C) for 7 hrs | 3.39 | MC |
| SRR7760295 | spikelet | high temperature treatment (38C) for 7 hrs | 3.05 | MC |
| SRR7760296 | spikelet | high temperature treatment (38C) for 7 hrs | 2.39 | MC |
| SRR7760297 | spikelet | control condition (29C) for 7 hrs | 4.49 | MC |