| SRR4457266 | 2nd_leaf | DAH44 | 5.32 | MC |
| SRR358795 | callus | wt | 2.87 | MC |
| SRR358796 | callus | wt | 3.54 | MC |
| SRR358797 | callus | wt | 4.34 | MC |
| SRR358798 | callus | wt | 2.76 | MC |
| SRR6320473 | carpel | wt | 2.57 | MC |
| SRR6320498 | carpel | wt | 2.60 | MC |
| SRR5560727 | caryopsis | wild_type | 0.70 | MC |
| SRR5560728 | caryopsis | wild_type | 0.74 | MC |
| SRR5560729 | caryopsis | wild_type | 1.31 | MC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 1.50 | MC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 3.66 | MC |
| SRR7265403 | coleoptile | 2dN | 4.37 | MC |
| SRR7265413 | coleoptile | 4dA | 3.94 | MC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 3.66 | MC |
| SRR4104647 | crown | "Zn_Efficient,8_days_of_treatment" | 2.49 | MC |
| SRR4104643 | crown | "Zn_Efficient,8_days_of_treatment" | 3.88 | MC |
| SRR4104644 | crown | "Zn_Efficient,8_days_of_treatment" | 0.61 | MC |
| SRR7265373 | embryo | dry seed 0 h | 0.98 | MC |
| SRR7265374 | embryo | dry seed 0 h | 0.99 | MC |
| SRR7265375 | embryo | dry seed 0 h | 0.42 | MC |
| SRR7265376 | embryo | 1hA | 0.93 | MC |
| SRR7265378 | embryo | 1hA | 1.13 | MC |
| SRR7265379 | embryo | 1hN | 1.18 | MC |
| SRR7265380 | embryo | 1hN | 0.60 | MC |
| SRR7265381 | embryo | 1hN | 1.24 | MC |
| SRR7265383 | embryo | 3hA | 0.68 | MC |
| SRR7265384 | embryo | 3hA | 0.32 | MC |
| SRR7265385 | embryo | 3hN | 0.51 | MC |
| SRR7265386 | embryo | 3hN | 0.41 | MC |
| SRR7265387 | embryo | 3hN | 0.99 | MC |
| SRR7265388 | embryo | 12hA | 4.55 | MC |
| SRR7265389 | embryo | 12hA | 3.70 | MC |
| SRR7265390 | embryo | 12hA | 3.13 | MC |
| SRR7265391 | embryo | 12hN | 3.05 | MC |
| SRR7265392 | embryo | 12hN | 3.94 | MC |
| SRR7265393 | embryo | 12hN | 3.78 | MC |
| SRR7265396 | embryo | 24hA | 2.11 | MC |
| SRR7265397 | embryo | 24hN | 4.25 | MC |
| SRR7265398 | embryo | 24hN | 2.16 | MC |
| SRR7265399 | embryo | 24hN | 4.02 | MC |
| SRR2338866 | endosprem | control | 2.47 | MC |
| SRR1213690 | flower | wt(flower buds) | 2.03 | MC |
| SRR1213691 | flower | wt | 1.54 | MC |
| SRR8240824 | leaf | wild_type | 1.18 | MC |
| SRR8240818 | leaf | wild_type | 0.25 | MC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 1.55 | MC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 2.09 | MC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 0.47 | MC |
| SRR2922622 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 5.63 | MC |
| SRR2922623 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 2.75 | MC |
| SRR2922624 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 1.09 | MC |
| SRR1952791 | leaf | 48_hrs_after_inoculation_with_L8 | 0.78 | MC |
| SRR1952798 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 9.16 | MC |
| SRR1761790 | leaf | "wild_type,control,2" | 5.05 | MC |
| SRR1761782 | leaf | "wild_type,control,1" | 5.05 | MC |
| SRR1761530 | leaf | control | 5.05 | MC |
| SRR6417964 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 2.67 | MC |
| SRR6417965 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 1.83 | MC |
| SRR6417966 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 2.44 | MC |
| SRR6417967 | leaf | H2O_control | 2.83 | MC |
| SRR6417968 | leaf | H2O_control | 2.86 | MC |
| SRR6417969 | leaf | H2O_control | 2.33 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 2.48 | MC |
| SRR6502102 | leaf | control | 4.12 | MC |
| SRR5856927 | leaf | control | 0.71 | MC |
| SRR5856928 | leaf | control | 1.40 | MC |
| SRR5856930 | leaf | salt | 0.23 | MC |
| SRR5856931 | leaf | salt | 0.34 | MC |
| SRR5856932 | leaf | salt | 0.25 | MC |
| SRR5856933 | leaf | control | 1.16 | MC |
| SRR5856935 | leaf | control | 0.66 | MC |
| SRR5856936 | leaf | salt | 1.10 | MC |
| SRR5856937 | leaf | salt | 0.44 | MC |
| SRR5856938 | leaf | salt | 0.75 | MC |
| SRR6053392 | leaf | ethanol solvent (untreated control) | 1.90 | MC |
| SRR6053393 | leaf | ethanol solvent (untreated control) | 1.16 | MC |
| SRR6053394 | leaf | ethanol solvent (untreated control) | 1.41 | MC |
| SRR6053396 | leaf | gibberellic acid (GA) | 7.05 | MC |
| SRR6053397 | leaf | gibberellic acid (GA) | 2.01 | MC |
| SRR6053398 | leaf | Paclobutrazol (PB) | 4.15 | MC |
| SRR6053399 | leaf | Paclobutrazol (PB) | 1.00 | MC |
| SRR6053400 | leaf | Paclobutrazol (PB) | 2.46 | MC |
| SRR6168973 | leaf | none (control) | 1.26 | MC |
| SRR6168974 | leaf | none (control) | 1.37 | MC |
| SRR6168976 | leaf | 0.5% Na2CO3 solution for 36h | 1.31 | MC |
| SRR6168977 | leaf | 0.5% Na2CO3 solution for 36h | 1.98 | MC |
| SRR6168978 | leaf | 0.5% Na2CO3 solution for 36h | 3.87 | MC |
| SRR6168979 | leaf | none (control) | 0.77 | MC |
| SRR6168980 | leaf | none (control) | 0.55 | MC |
| SRR6168981 | leaf | none (control) | 0.24 | MC |
| SRR6168983 | leaf | 0.5% Na2CO3 solution for 36h | 0.36 | MC |
| SRR6168984 | leaf | 0.5% Na2CO3 solution for 36h | 1.85 | MC |
| SRR8582889 | panicle | AM | 1.40 | MC |
| SRR8582890 | panicle | AM | 1.65 | MC |
| SRR8582893 | panicle | PM | 0.42 | MC |
| SRR5110429 | panicle | Dawn | 4.42 | MC |
| SRR5110445 | panicle | Dusk | 2.58 | MC |
| SRR5110449 | panicle | Dawn + 14h | 4.40 | MC |
| SRR1213696 | endosprem | wt(milk grains) | 0.41 | MC |
| SRR1213697 | endosprem | wt(mature seeds) | 0.74 | MC |
| SRR1633182 | panicle | WT | 1.02 | MC |
| SRR1633185 | panicle | WT | 1.17 | MC |
| SRR5278374 | pistil | "Balilla,S1" | 3.10 | MC |
| SRR5278375 | pistil | "Balilla,S1" | 0.28 | MC |
| SRR5278377 | pistil | "Balilla,S2" | 0.55 | MC |
| SRR5278379 | pistil | "Balilla,S3" | 1.21 | MC |
| SRR5126147 | root | "mock,1_day" | 1.23 | MC |
| SRR5126148 | root | "mock,1_day" | 1.30 | MC |
| SRR5126149 | root | "mock,1_day" | 1.08 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 0.97 | MC |
| SRR5126153 | root | "mock,7_days" | 3.53 | MC |
| SRR5126155 | root | "mock,7_days" | 1.66 | MC |
| SRR5126157 | root | "mock,7_days" | 1.63 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 4.22 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 0.37 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 2.38 | MC |
| SRR5126165 | root | "mock,14_days" | 1.32 | MC |
| SRR5126167 | root | "mock,14_days" | 1.84 | MC |
| SRR5126169 | root | "mock,14_days" | 1.96 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 0.60 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 0.78 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 1.45 | MC |
| SRR3472900 | root | nontransgenic_rice_plant | 0.78 | MC |
| SRR1213694 | root | wt | 1.17 | MC |
| SRR4947482 | root | Al | 1.43 | MC |
| SRR4947485 | root | Al | 4.29 | MC |
| SRR4947492 | root | Al | 3.83 | MC |
| SRR4947504 | root | control | 4.47 | MC |
| SRR4947507 | root | Al | 2.56 | MC |
| SRR6502091 | root | 100 mM NaCl | 1.65 | MC |
| SRR6502096 | root | control | 3.08 | MC |
| SRR1740434 | root_differentiation_zone | wt | 1.60 | MC |
| SRR1740433 | root_elongation_zone | wt | 2.14 | MC |
| SRR1740428 | root_meristematic_zone | wt | 4.54 | MC |
| SRR1740429 | root_meristematic_zone | wt | 0.92 | MC |
| SRR1740430 | root_meristematic_zone | wt | 0.55 | MC |
| SRR6441554 | seedling | wild_type | 2.66 | MC |
| SRR2154084 | seedling | wt | 0.48 | MC |
| SRR2857719 | seedling | drought_stress_0h | 3.09 | MC |
| SRR2857721 | seedling | drought_stress_6h | 0.74 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 13.07 | MC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 2.17 | MC |
| SRR5796941 | shoot | "Control,22C for 10 min" | 1.86 | MC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 1.78 | MC |
| SRR5796943 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 1.25 | MC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 2.36 | MC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 2.17 | MC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 3.35 | MC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 3.46 | MC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 2.49 | MC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 1.53 | MC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 2.10 | MC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 1.62 | MC |
| SRR5796958 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 1.84 | MC |
| SRR5796959 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 1.52 | MC |
| SRR5052709 | shoot_apical_meristem | 0_days_after_shift | 2.31 | MC |
| SRR5052710 | shoot_apical_meristem | 0_days_after_shift | 4.83 | MC |
| SRR5052716 | shoot_apical_meristem | 8_days_after_shift | 5.90 | MC |
| SRR5052719 | shoot_apical_meristem | 8_days_after_shift | 3.95 | MC |
| SRR5052720 | shoot_apical_meristem | 8_days_after_shift | 3.17 | MC |
| SRR5052723 | shoot_apical_meristem | 12_days_after_shift | 2.64 | MC |
| SRR5052725 | shoot_apical_meristem | 0_days_after_shift | 3.74 | MC |
| SRR5052726 | shoot_apical_meristem | 0_days_after_shift | 3.24 | MC |
| SRR5052727 | shoot_apical_meristem | 4_days_after_shift | 2.81 | MC |
| SRR5052728 | shoot_apical_meristem | 4_days_after_shift | 8.82 | MC |
| SRR5052730 | shoot_apical_meristem | 4_days_after_shift | 5.71 | MC |
| SRR5052731 | shoot_apical_meristem | 8_days_after_shift | 1.55 | MC |
| SRR5052733 | shoot_apical_meristem | 8_days_after_shift | 5.15 | MC |
| SRR5052734 | shoot_apical_meristem | 12_days_after_shift | 4.51 | MC |
| SRR1617549 | shoot_apical_meristem | no collect | 1.50 | MC |
| SRR1617558 | shoot_apical_meristem | no collect | 1.02 | MC |
| SRR1617559 | shoot_apical_meristem | no collect | 1.67 | MC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 0.39 | MC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 1.43 | MC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 0.59 | MC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 1.44 | MC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 1.93 | MC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 2.17 | MC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 2.52 | MC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 2.32 | MC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 3.40 | MC |