| SRR6320473 | carpel | wt | 1.38 | MC |
| SRR6320498 | carpel | wt | 2.43 | MC |
| SRR5560727 | caryopsis | wild_type | 1.94 | MC |
| SRR5560728 | caryopsis | wild_type | 0.78 | MC |
| SRR5560729 | caryopsis | wild_type | 2.00 | MC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 0.45 | MC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 0.67 | MC |
| SRR4947495 | root | control | 3.70 | MC |
| SRR7265404 | coleoptile | 2dN | 3.94 | MC |
| SRR7265405 | coleoptile | 2dN | 2.99 | MC |
| SRR7265408 | coleoptile | 3dA | 1.21 | MC |
| SRR7265410 | coleoptile | 3dN | 3.17 | MC |
| SRR7265412 | coleoptile | 4dA | 1.18 | MC |
| SRR7265414 | coleoptile | 4dA | 1.91 | MC |
| SRR7265416 | coleoptile | 4dN | 2.76 | MC |
| SRR7265417 | coleoptile | 4dN | 3.52 | MC |
| SRR7265418 | coleoptile | 3dN1dA | 3.33 | MC |
| SRR7265419 | coleoptile | 3dN1dA | 2.53 | MC |
| SRR7265420 | coleoptile | 3dN1dA | 1.90 | MC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 1.74 | MC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 0.81 | MC |
| SRR4104637 | crown | "Zn_deficiency,8_days_of_treatment" | 1.37 | MC |
| SRR4104647 | crown | "Zn_Efficient,8_days_of_treatment" | 0.68 | MC |
| SRR4104640 | crown | "Zn_deficiency,8_days_of_treatment" | 2.61 | MC |
| SRR4104641 | crown | "Zn_deficiency,8_days_of_treatment" | 1.30 | MC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 1.68 | MC |
| SRR4104643 | crown | "Zn_Efficient,8_days_of_treatment" | 1.01 | MC |
| SRR4104644 | crown | "Zn_Efficient,8_days_of_treatment" | 0.81 | MC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 2.44 | MC |
| SRR4104646 | crown | "Zn_Efficient,8_days_of_treatment" | 1.32 | MC |
| SRR7265373 | embryo | dry seed 0 h | 1.19 | MC |
| SRR7265374 | embryo | dry seed 0 h | 1.22 | MC |
| SRR7265375 | embryo | dry seed 0 h | 0.65 | MC |
| SRR7265376 | embryo | 1hA | 1.41 | MC |
| SRR7265377 | embryo | 1hA | 1.25 | MC |
| SRR7265378 | embryo | 1hA | 1.00 | MC |
| SRR7265379 | embryo | 1hN | 1.41 | MC |
| SRR7265380 | embryo | 1hN | 0.96 | MC |
| SRR7265381 | embryo | 1hN | 1.21 | MC |
| SRR7265382 | embryo | 3hA | 1.42 | MC |
| SRR7265383 | embryo | 3hA | 2.14 | MC |
| SRR7265384 | embryo | 3hA | 1.32 | MC |
| SRR7265385 | embryo | 3hN | 0.83 | MC |
| SRR7265386 | embryo | 3hN | 1.51 | MC |
| SRR7265387 | embryo | 3hN | 1.05 | MC |
| SRR7265388 | embryo | 12hA | 3.35 | MC |
| SRR7265389 | embryo | 12hA | 2.67 | MC |
| SRR7265390 | embryo | 12hA | 3.18 | MC |
| SRR7265391 | embryo | 12hN | 2.45 | MC |
| SRR7265392 | embryo | 12hN | 1.67 | MC |
| SRR7265393 | embryo | 12hN | 1.09 | MC |
| SRR7265396 | embryo | 24hA | 2.87 | MC |
| SRR7265397 | embryo | 24hN | 3.62 | MC |
| SRR7265398 | embryo | 24hN | 1.15 | MC |
| SRR7265399 | embryo | 24hN | 2.41 | MC |
| SRR2338867 | endosprem | control | 0.73 | MC |
| SRR2338869 | endosprem | high_temperature | 1.20 | MC |
| SRR1213690 | flower | wt(flower buds) | 0.33 | MC |
| SRR8240824 | leaf | wild_type | 0.55 | MC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 0.37 | MC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 0.98 | MC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 0.91 | MC |
| SRR3209771 | leaf | Drought;Long_Day | 0.31 | MC |
| SRR3209780 | leaf | Drought;Short_Day | 0.68 | MC |
| SRR8611900 | leaf | Non-inoculated | 0.41 | MC |
| SRR8611902 | leaf | Non-inoculated | 0.23 | MC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 0.25 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 1.41 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 1.10 | MC |
| SRR6053397 | leaf | gibberellic acid (GA) | 1.51 | MC |
| SRR6168974 | leaf | none (control) | 0.57 | MC |
| SRR6168978 | leaf | 0.5% Na2CO3 solution for 36h | 0.53 | MC |
| SRR6168980 | leaf | none (control) | 0.41 | MC |
| SRR6168981 | leaf | none (control) | 2.25 | MC |
| SRR6168982 | leaf | 0.5% Na2CO3 solution for 36h | 2.22 | MC |
| SRR6168983 | leaf | 0.5% Na2CO3 solution for 36h | 0.81 | MC |
| SRR6168984 | leaf | 0.5% Na2CO3 solution for 36h | 1.85 | MC |
| SRR5110429 | panicle | Dawn | 0.40 | MC |
| SRR4947496 | root | control | 3.35 | MC |
| SRR5110438 | panicle | Dawn + 7h | 0.39 | MC |
| SRR5110443 | panicle | Dawn + 10.5h | 0.65 | MC |
| SRR5110453 | panicle | Dawn + 17.5h | 0.41 | MC |
| SRR1213696 | endosprem | wt(milk grains) | 0.46 | MC |
| SRR1213697 | endosprem | wt(mature seeds) | 2.08 | MC |
| SRR1633185 | panicle | WT | 0.48 | MC |
| SRR5278376 | pistil | "Balilla,S2" | 3.57 | MC |
| SRR5278377 | pistil | "Balilla,S2" | 4.56 | MC |
| SRR5278378 | pistil | "Balilla,S3" | 1.04 | MC |
| SRR5278379 | pistil | "Balilla,S3" | 0.55 | MC |
| SRR5126147 | root | "mock,1_day" | 3.57 | MC |
| SRR5126148 | root | "mock,1_day" | 3.15 | MC |
| SRR5126149 | root | "mock,1_day" | 1.87 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 0.95 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 1.32 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 1.54 | MC |
| SRR5126155 | root | "mock,7_days" | 3.61 | MC |
| SRR5126157 | root | "mock,7_days" | 3.40 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 0.56 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 0.93 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 0.46 | MC |
| SRR5126165 | root | "mock,14_days" | 3.02 | MC |
| SRR5126167 | root | "mock,14_days" | 1.04 | MC |
| SRR5126169 | root | "mock,14_days" | 3.00 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 0.55 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 0.36 | MC |
| SRR3472897 | root | nontransgenic_rice_plant | 2.25 | MC |
| SRR3472900 | root | nontransgenic_rice_plant | 0.41 | MC |
| SRR1213694 | root | wt | 0.45 | MC |
| SRR4947478 | root | control | 2.79 | MC |
| SRR4947479 | root | control | 3.81 | MC |
| SRR4947480 | root | control | 4.37 | MC |
| SRR4947481 | root | control | 3.23 | MC |
| SRR4947483 | root | Al | 2.51 | MC |
| SRR4947484 | root | Al | 4.32 | MC |
| SRR4947488 | root | control | 3.23 | MC |
| SRR4947489 | root | control | 4.80 | MC |
| SRR4947490 | root | Al | 3.92 | MC |
| SRR4947491 | root | Al | 3.82 | MC |
| SRR4947492 | root | Al | 3.12 | MC |
| SRR4947493 | root | Al | 1.54 | MC |
| SRR4947494 | root | control | 2.47 | MC |
| SRR4947498 | root | Al | 1.82 | MC |
| SRR4947499 | root | Al | 3.97 | MC |
| SRR4947500 | root | Al | 2.94 | MC |
| SRR4947501 | root | Al | 1.88 | MC |
| SRR4947502 | root | control | 3.17 | MC |
| SRR4947503 | root | control | 4.65 | MC |
| SRR4947504 | root | control | 4.06 | MC |
| SRR4947505 | root | control | 2.75 | MC |
| SRR4947507 | root | Al | 1.90 | MC |
| SRR4947508 | root | Al | 1.90 | MC |
| SRR4947509 | root | Al | 3.25 | MC |
| SRR6502091 | root | 100 mM NaCl | 1.37 | MC |
| SRR6502092 | root | 100 mM NaCl | 1.11 | MC |
| SRR6502093 | root | 100 mM NaCl | 2.09 | MC |
| SRR6502094 | root | control | 1.67 | MC |
| SRR6502095 | root | control | 2.04 | MC |
| SRR6502096 | root | control | 3.09 | MC |
| SRR6502103 | root | 100 mM NaCl | 4.78 | MC |
| SRR6502104 | root | 100 mM NaCl | 3.43 | MC |
| SRR6502105 | root | 100 mM NaCl | 1.70 | MC |
| SRR6502106 | root | control | 1.25 | MC |
| SRR6502107 | root | control | 3.62 | MC |
| SRR6502108 | root | control | 2.31 | MC |
| SRR1740435 | root_differentiation_zone | wt | 1.89 | MC |
| SRR1740436 | root_differentiation_zone | wt | 3.13 | MC |
| SRR1740432 | root_elongation_zone | wt | 0.84 | MC |
| SRR1740433 | root_elongation_zone | wt | 0.39 | MC |
| SRR1740430 | root_meristematic_zone | wt | 0.42 | MC |
| SRR6441555 | seedling | wild_type | 0.30 | MC |
| SRR2154086 | seedling | wt | 0.80 | MC |
| SRR2154082 | seedling | wt | 0.35 | MC |
| SRR2154083 | seedling | wt | 0.33 | MC |
| SRR2154084 | seedling | wt | 0.58 | MC |
| SRR2154087 | seedling | wt | 0.42 | MC |
| SRR3098741 | seedling | wt | 0.51 | MC |
| SRR3098742 | seedling | wt | 0.37 | MC |
| SRR3098743 | seedling | wt | 0.30 | MC |
| SRR2857719 | seedling | drought_stress_0h | 1.10 | MC |
| SRR2857721 | seedling | drought_stress_6h | 0.36 | MC |
| SRR1944582 | seedling | "with_chilling_teatment_(4C,33h)" | 0.52 | MC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 3.73 | MC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 4.85 | MC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 5.39 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 10.09 | MC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 6.51 | MC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 6.35 | MC |
| SRR4841743 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 5.04 | MC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 0.50 | MC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 0.70 | MC |
| SRR5052710 | shoot_apical_meristem | 0_days_after_shift | 0.55 | MC |
| SRR5052713 | shoot_apical_meristem | 4_days_after_shift | 0.98 | MC |
| SRR5052714 | shoot_apical_meristem | 4_days_after_shift | 0.52 | MC |
| SRR5052716 | shoot_apical_meristem | 8_days_after_shift | 0.80 | MC |
| SRR5052719 | shoot_apical_meristem | 8_days_after_shift | 0.72 | MC |
| SRR5052720 | shoot_apical_meristem | 8_days_after_shift | 0.67 | MC |
| SRR5052721 | shoot_apical_meristem | 12_days_after_shift | 0.73 | MC |
| SRR5052722 | shoot_apical_meristem | 12_days_after_shift | 2.01 | MC |
| SRR5052723 | shoot_apical_meristem | 12_days_after_shift | 0.51 | MC |
| SRR5052724 | shoot_apical_meristem | 0_days_after_shift | 0.48 | MC |
| SRR5052726 | shoot_apical_meristem | 0_days_after_shift | 0.73 | MC |
| SRR5052728 | shoot_apical_meristem | 4_days_after_shift | 1.37 | MC |
| SRR5052730 | shoot_apical_meristem | 4_days_after_shift | 0.70 | MC |
| SRR5052731 | shoot_apical_meristem | 8_days_after_shift | 0.71 | MC |
| SRR5052733 | shoot_apical_meristem | 8_days_after_shift | 0.62 | MC |
| SRR5052734 | shoot_apical_meristem | 12_days_after_shift | 0.62 | MC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 2.36 | MC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 1.30 | MC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 2.06 | MC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 1.08 | MC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 1.53 | MC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 1.03 | MC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 1.31 | MC |