| SRR4457249 | 2nd_leaf | DAH4 | 2.57 | MC |
| SRR4457250 | 2nd_leaf | DAH4 | 1.86 | MC |
| SRR4457251 | 2nd_leaf | DAH4 | 2.87 | MC |
| SRR4457252 | 2nd_leaf | DAH12 | 1.12 | MC |
| SRR4457253 | 2nd_leaf | DAH12 | 1.19 | MC |
| SRR4457254 | 2nd_leaf | DAH12 | 1.05 | MC |
| SRR4457255 | 2nd_leaf | DAH20 | 0.67 | MC |
| SRR4457256 | 2nd_leaf | DAH20 | 0.94 | MC |
| SRR4457257 | 2nd_leaf | DAH20 | 0.88 | MC |
| SRR4457258 | 2nd_leaf | DAH28 | 1.05 | MC |
| SRR4457259 | 2nd_leaf | DAH28 | 0.71 | MC |
| SRR4457260 | 2nd_leaf | DAH28 | 1.72 | MC |
| SRR4457261 | 2nd_leaf | DAH36 | 2.21 | MC |
| SRR4457262 | 2nd_leaf | DAH36 | 1.10 | MC |
| SRR4457263 | 2nd_leaf | DAH36 | 2.28 | MC |
| SRR4457264 | 2nd_leaf | DAH44 | 1.49 | MC |
| SRR4457265 | 2nd_leaf | DAH44 | 3.32 | MC |
| SRR4457266 | 2nd_leaf | DAH44 | 1.16 | MC |
| SRR3745126 | anther | wt | 0.95 | MC |
| SRR3745127 | anther | wt | 1.21 | MC |
| SRR358795 | callus | wt | 6.03 | MC |
| SRR358796 | callus | wt | 5.25 | MC |
| SRR358797 | callus | wt | 4.36 | MC |
| SRR358798 | callus | wt | 5.18 | MC |
| SRR5560729 | caryopsis | wild_type | 4.33 | MC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 4.85 | MC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 3.11 | MC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 4.00 | MC |
| SRR7265400 | coleoptile | 2dA | 0.43 | MC |
| SRR7265405 | coleoptile | 2dN | 0.44 | MC |
| SRR4104644 | crown | "Zn_Efficient,8_days_of_treatment" | 1.68 | MC |
| SRR7265373 | embryo | dry seed 0 h | 0.36 | MC |
| SRR7265374 | embryo | dry seed 0 h | 0.40 | MC |
| SRR7265375 | embryo | dry seed 0 h | 0.29 | MC |
| SRR7265378 | embryo | 1hA | 0.43 | MC |
| SRR7265379 | embryo | 1hN | 0.42 | MC |
| SRR7265380 | embryo | 1hN | 0.48 | MC |
| SRR7265381 | embryo | 1hN | 0.32 | MC |
| SRR7265387 | embryo | 3hN | 0.35 | MC |
| SRR7265388 | embryo | 12hA | 0.43 | MC |
| SRR7265390 | embryo | 12hA | 0.42 | MC |
| SRR7265393 | embryo | 12hN | 0.42 | MC |
| SRR7265395 | embryo | 24hA | 0.54 | MC |
| SRR2338866 | endosprem | control | 1.01 | MC |
| SRR2338867 | endosprem | control | 0.60 | MC |
| SRR2338868 | endosprem | high_temperature | 1.96 | MC |
| SRR2338869 | endosprem | high_temperature | 1.52 | MC |
| SRR976168 | flag_leaf | wild_type | 1.30 | MC |
| SRR4457231 | flag_leaf | DAH4 | 3.22 | MC |
| SRR4457233 | flag_leaf | DAH4 | 2.45 | MC |
| SRR4457234 | flag_leaf | DAH12 | 0.83 | MC |
| SRR4457235 | flag_leaf | DAH12 | 0.63 | MC |
| SRR4457236 | flag_leaf | DAH12 | 0.62 | MC |
| SRR4457237 | flag_leaf | DAH20 | 0.57 | MC |
| SRR4457238 | flag_leaf | DAH20 | 0.40 | MC |
| SRR4457239 | flag_leaf | DAH20 | 0.52 | MC |
| SRR4457240 | flag_leaf | DAH28 | 0.72 | MC |
| SRR4457241 | flag_leaf | DAH28 | 0.80 | MC |
| SRR4457242 | flag_leaf | DAH28 | 1.01 | MC |
| SRR4457243 | flag_leaf | DAH36 | 1.15 | MC |
| SRR4457244 | flag_leaf | DAH36 | 0.92 | MC |
| SRR4457245 | flag_leaf | DAH36 | 1.00 | MC |
| SRR4457246 | flag_leaf | DAH44 | 1.16 | MC |
| SRR4457247 | flag_leaf | DAH44 | 1.86 | MC |
| SRR4457248 | flag_leaf | DAH44 | 1.23 | MC |
| SRR1213690 | flower | wt(flower buds) | 3.81 | MC |
| SRR1213691 | flower | wt | 4.05 | MC |
| SRR8240818 | leaf | wild_type | 1.91 | MC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 3.32 | MC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 2.93 | MC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 4.18 | MC |
| SRR2922622 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 3.43 | MC |
| SRR2922623 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 5.90 | MC |
| SRR2922624 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 3.62 | MC |
| SRR1952778 | leaf | 48_hrs_after_inoculation_with_BLS256 | 3.39 | MC |
| SRR1952779 | leaf | 48_hrs_after_inoculation_with_BLS256 | 5.51 | MC |
| SRR1952780 | leaf | 48_hrs_after_inoculation_with_BLS256 | 3.20 | MC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 3.22 | MC |
| SRR1952782 | leaf | 48_hrs_after_inoculation_with_BLS279 | 4.37 | MC |
| SRR1952783 | leaf | 48_hrs_after_inoculation_with_BLS279 | 3.60 | MC |
| SRR1952784 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 2.69 | MC |
| SRR1952785 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 3.15 | MC |
| SRR1952786 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 3.24 | MC |
| SRR1952787 | leaf | 48_hrs_after_inoculation_with_B8_12 | 3.57 | MC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 2.71 | MC |
| SRR1952790 | leaf | 48_hrs_after_inoculation_with_L8 | 3.24 | MC |
| SRR1952791 | leaf | 48_hrs_after_inoculation_with_L8 | 4.20 | MC |
| SRR1952792 | leaf | 48_hrs_after_inoculation_with_L8 | 4.54 | MC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 3.83 | MC |
| SRR1952795 | leaf | 48_hrs_after_inoculation_with_RS105 | 3.24 | MC |
| SRR1952796 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 3.61 | MC |
| SRR1952797 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 2.71 | MC |
| SRR1952798 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 3.18 | MC |
| SRR1952799 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 4.56 | MC |
| SRR1952800 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 1.78 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 3.56 | MC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 2.98 | MC |
| SRR1952803 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 2.25 | MC |
| SRR1952804 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 2.52 | MC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 4.05 | MC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 2.44 | MC |
| SRR1952807 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 2.84 | MC |
| SRR1952808 | leaf | 48_hrs_after_mock_inoculation | 3.60 | MC |
| SRR1952809 | leaf | 48_hrs_after_mock_inoculation | 2.97 | MC |
| SRR1761788 | leaf | "wild_type,drought,2" | 4.59 | MC |
| SRR1761789 | leaf | "wild_type,drought,2" | 4.02 | MC |
| SRR1761790 | leaf | "wild_type,control,2" | 3.27 | MC |
| SRR1761791 | leaf | "wild_type,control,2" | 3.97 | MC |
| SRR1761780 | leaf | "wild_type,drought,1" | 4.59 | MC |
| SRR1761781 | leaf | "wild_type,drought,1" | 4.02 | MC |
| SRR1761782 | leaf | "wild_type,control,1" | 3.27 | MC |
| SRR1761783 | leaf | "wild_type,control,1" | 3.97 | MC |
| SRR1761528 | leaf | drought | 4.59 | MC |
| SRR1761529 | leaf | drought | 4.02 | MC |
| SRR1761530 | leaf | control | 3.27 | MC |
| SRR1761531 | leaf | control | 3.97 | MC |
| SRR6417964 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 1.91 | MC |
| SRR6417965 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 2.03 | MC |
| SRR6417966 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 2.56 | MC |
| SRR6417967 | leaf | H2O_control | 2.70 | MC |
| SRR6417968 | leaf | H2O_control | 3.22 | MC |
| SRR3209769 | leaf | Watered;Long_Day | 1.41 | MC |
| SRR3209770 | leaf | Watered;Long_Day | 1.70 | MC |
| SRR3209771 | leaf | Drought;Long_Day | 3.99 | MC |
| SRR3209772 | leaf | Drought;Long_Day | 3.57 | MC |
| SRR3209773 | leaf | Watered;Short_Day | 2.58 | MC |
| SRR3209774 | leaf | Watered;Short_Day | 1.78 | MC |
| SRR3209775 | leaf | Drought;Short_Day | 2.88 | MC |
| SRR3209776 | leaf | Drought;Short_Day | 2.57 | MC |
| SRR3209778 | leaf | Drought;Long_Day | 2.31 | MC |
| SRR3209779 | leaf | Watered;Short_Day | 1.87 | MC |
| SRR3209780 | leaf | Drought;Short_Day | 4.81 | MC |
| SRR6502085 | leaf | 100 mM NaCl | 3.70 | MC |
| SRR6502088 | leaf | control | 3.52 | MC |
| SRR6502097 | leaf | 100 mM NaCl | 4.27 | MC |
| SRR6502098 | leaf | 100 mM NaCl | 3.80 | MC |
| SRR6502101 | leaf | control | 3.56 | MC |
| SRR6502102 | leaf | control | 3.69 | MC |
| SRR1213696 | endosprem | wt(milk grains) | 1.53 | MC |
| SRR1213697 | endosprem | wt(mature seeds) | 1.71 | MC |
| SRR5126147 | root | "mock,1_day" | 2.20 | MC |
| SRR5126148 | root | "mock,1_day" | 2.36 | MC |
| SRR5126149 | root | "mock,1_day" | 2.59 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 2.42 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 2.68 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 2.87 | MC |
| SRR5126153 | root | "mock,7_days" | 3.10 | MC |
| SRR5126155 | root | "mock,7_days" | 3.93 | MC |
| SRR5126165 | root | "mock,14_days" | 2.52 | MC |
| SRR5126167 | root | "mock,14_days" | 2.31 | MC |
| SRR3472897 | root | nontransgenic_rice_plant | 0.71 | MC |
| SRR1213694 | root | wt | 0.51 | MC |
| SRR6502091 | root | 100 mM NaCl | 2.11 | MC |
| SRR6502092 | root | 100 mM NaCl | 3.19 | MC |
| SRR6502093 | root | 100 mM NaCl | 2.69 | MC |
| SRR6502094 | root | control | 2.50 | MC |
| SRR6502095 | root | control | 2.19 | MC |
| SRR6502096 | root | control | 2.39 | MC |
| SRR6502103 | root | 100 mM NaCl | 1.29 | MC |
| SRR6502104 | root | 100 mM NaCl | 2.06 | MC |
| SRR6502105 | root | 100 mM NaCl | 3.26 | MC |
| SRR6502106 | root | control | 1.41 | MC |
| SRR6502107 | root | control | 1.29 | MC |
| SRR6502108 | root | control | 1.27 | MC |
| SRR1740434 | root_differentiation_zone | wt | 1.41 | MC |
| SRR1740435 | root_differentiation_zone | wt | 0.53 | MC |
| SRR1740436 | root_differentiation_zone | wt | 0.95 | MC |
| SRR1740431 | root_elongation_zone | wt | 2.00 | MC |
| SRR1740432 | root_elongation_zone | wt | 2.21 | MC |
| SRR1740433 | root_elongation_zone | wt | 2.03 | MC |
| SRR1740428 | root_meristematic_zone | wt | 2.05 | MC |
| SRR1740429 | root_meristematic_zone | wt | 2.10 | MC |
| SRR1740430 | root_meristematic_zone | wt | 3.40 | MC |
| SRR2857719 | seedling | drought_stress_0h | 2.21 | MC |
| SRR2857720 | seedling | drought_stress_1h | 2.46 | MC |
| SRR358791 | seedling | wt | 3.95 | MC |
| SRR358792 | seedling | wt | 5.66 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 7.72 | MC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 6.11 | MC |
| SRR3950244 | shoot | Drought_during_3_days;Fr13_inoculated | 2.38 | MC |
| SRR3950245 | shoot | Drought_during_3_days;Fr13_inoculated | 2.70 | MC |
| SRR3950246 | shoot | Drought_during_3_days;Fr13_inoculated | 1.68 | MC |
| SRR3950247 | shoot | No_DIS;Fr13_inoculated | 2.74 | MC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 3.11 | MC |
| SRR5796941 | shoot | "Control,22C for 10 min" | 3.12 | MC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 3.21 | MC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 2.23 | MC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 2.44 | MC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 1.84 | MC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 1.64 | MC |
| SRR5052719 | shoot_apical_meristem | 8_days_after_shift | 8.34 | MC |
| SRR5052722 | shoot_apical_meristem | 12_days_after_shift | 6.97 | MC |
| SRR5052723 | shoot_apical_meristem | 12_days_after_shift | 5.82 | MC |
| SRR5052732 | shoot_apical_meristem | 8_days_after_shift | 8.57 | MC |
| SRR1617549 | shoot_apical_meristem | no collect | 1.70 | MC |
| SRR1617553 | shoot_apical_meristem | no collect | 5.19 | MC |
| SRR1617554 | shoot_apical_meristem | no collect | 4.38 | MC |
| SRR1617556 | shoot_apical_meristem | no collect | 3.41 | MC |
| SRR1617557 | shoot_apical_meristem | no collect | 6.37 | MC |
| SRR1617558 | shoot_apical_meristem | no collect | 6.32 | MC |
| SRR1617559 | shoot_apical_meristem | no collect | 6.12 | MC |