| SRR4457259 | 2nd_leaf | DAH28 | 4.21 | MC |
| SRR3745126 | anther | wt | 0.77 | MC |
| SRR5560727 | caryopsis | wild_type | 3.05 | MC |
| SRR5560728 | caryopsis | wild_type | 0.81 | MC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 2.85 | MC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 2.92 | MC |
| SRR7265400 | coleoptile | 2dA | 0.38 | MC |
| SRR7265401 | coleoptile | 2dA | 0.43 | MC |
| SRR7265402 | coleoptile | 2dA | 0.32 | MC |
| SRR7265403 | coleoptile | 2dN | 0.80 | MC |
| SRR7265404 | coleoptile | 2dN | 0.47 | MC |
| SRR7265405 | coleoptile | 2dN | 1.02 | MC |
| SRR7265406 | coleoptile | 3dA | 0.99 | MC |
| SRR7265407 | coleoptile | 3dA | 0.73 | MC |
| SRR7265410 | coleoptile | 3dN | 0.43 | MC |
| SRR7265411 | coleoptile | 3dN | 0.51 | MC |
| SRR7265414 | coleoptile | 4dA | 0.65 | MC |
| SRR7265415 | coleoptile | 4dN | 0.82 | MC |
| SRR7265416 | coleoptile | 4dN | 0.74 | MC |
| SRR7265417 | coleoptile | 4dN | 0.49 | MC |
| SRR7265418 | coleoptile | 3dN1dA | 1.14 | MC |
| SRR7265419 | coleoptile | 3dN1dA | 1.24 | MC |
| SRR7265420 | coleoptile | 3dN1dA | 1.49 | MC |
| SRR4104638 | crown | "Zn_deficiency,8_days_of_treatment" | 0.48 | MC |
| SRR4104647 | crown | "Zn_Efficient,8_days_of_treatment" | 0.90 | MC |
| SRR4104640 | crown | "Zn_deficiency,8_days_of_treatment" | 0.72 | MC |
| SRR4104641 | crown | "Zn_deficiency,8_days_of_treatment" | 0.83 | MC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 1.13 | MC |
| SRR4104644 | crown | "Zn_Efficient,8_days_of_treatment" | 0.60 | MC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 0.65 | MC |
| SRR4104646 | crown | "Zn_Efficient,8_days_of_treatment" | 1.43 | MC |
| SRR7265373 | embryo | dry seed 0 h | 2.54 | MC |
| SRR7265374 | embryo | dry seed 0 h | 2.93 | MC |
| SRR7265375 | embryo | dry seed 0 h | 1.35 | MC |
| SRR7265377 | embryo | 1hA | 3.32 | MC |
| SRR7265382 | embryo | 3hA | 2.58 | MC |
| SRR7265383 | embryo | 3hA | 1.80 | MC |
| SRR7265384 | embryo | 3hA | 2.02 | MC |
| SRR7265385 | embryo | 3hN | 2.56 | MC |
| SRR7265386 | embryo | 3hN | 2.28 | MC |
| SRR7265387 | embryo | 3hN | 2.68 | MC |
| SRR7265390 | embryo | 12hA | 0.55 | MC |
| SRR7265391 | embryo | 12hN | 0.93 | MC |
| SRR7265392 | embryo | 12hN | 0.43 | MC |
| SRR7265393 | embryo | 12hN | 0.47 | MC |
| SRR7265394 | embryo | 24hA | 0.77 | MC |
| SRR7265397 | embryo | 24hN | 0.67 | MC |
| SRR7265398 | embryo | 24hN | 0.74 | MC |
| SRR7265399 | embryo | 24hN | 0.77 | MC |
| SRR2338867 | endosprem | control | 1.54 | MC |
| SRR976168 | flag_leaf | wild_type | 0.96 | MC |
| SRR1213690 | flower | wt(flower buds) | 1.09 | MC |
| SRR2922622 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 1.16 | MC |
| SRR2922623 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 5.67 | MC |
| SRR1952780 | leaf | 48_hrs_after_inoculation_with_BLS256 | 4.73 | MC |
| SRR1952782 | leaf | 48_hrs_after_inoculation_with_BLS279 | 6.21 | MC |
| SRR1952785 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 5.89 | MC |
| SRR1952787 | leaf | 48_hrs_after_inoculation_with_B8_12 | 4.91 | MC |
| SRR1952791 | leaf | 48_hrs_after_inoculation_with_L8 | 5.10 | MC |
| SRR1952794 | leaf | 48_hrs_after_inoculation_with_RS105 | 1.01 | MC |
| SRR1952798 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 1.20 | MC |
| SRR1952799 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 0.70 | MC |
| SRR1952803 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 4.53 | MC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 3.01 | MC |
| SRR1952809 | leaf | 48_hrs_after_mock_inoculation | 1.61 | MC |
| SRR1761789 | leaf | "wild_type,drought,2" | 3.64 | MC |
| SRR1761781 | leaf | "wild_type,drought,1" | 3.64 | MC |
| SRR1761529 | leaf | drought | 3.64 | MC |
| SRR504365 | leaf | wt | 2.52 | MC |
| SRR6417964 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 0.42 | MC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 2.60 | MC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 2.34 | MC |
| SRR1213693 | leaf | wt | 2.76 | MC |
| SRR5856927 | leaf | control | 0.22 | MC |
| SRR5856930 | leaf | salt | 0.51 | MC |
| SRR5856931 | leaf | salt | 0.31 | MC |
| SRR5856932 | leaf | salt | 0.22 | MC |
| SRR5856933 | leaf | control | 0.23 | MC |
| SRR5856934 | leaf | control | 0.30 | MC |
| SRR5856936 | leaf | salt | 0.45 | MC |
| SRR5856937 | leaf | salt | 0.43 | MC |
| SRR5856938 | leaf | salt | 0.20 | MC |
| SRR6053393 | leaf | ethanol solvent (untreated control) | 2.71 | MC |
| SRR6053395 | leaf | gibberellic acid (GA) | 1.65 | MC |
| SRR6053396 | leaf | gibberellic acid (GA) | 3.22 | MC |
| SRR6053398 | leaf | Paclobutrazol (PB) | 1.04 | MC |
| SRR6053400 | leaf | Paclobutrazol (PB) | 2.06 | MC |
| SRR6168973 | leaf | none (control) | 0.40 | MC |
| SRR6168975 | leaf | none (control) | 4.80 | MC |
| SRR6168976 | leaf | 0.5% Na2CO3 solution for 36h | 1.06 | MC |
| SRR6168977 | leaf | 0.5% Na2CO3 solution for 36h | 1.68 | MC |
| SRR6168978 | leaf | 0.5% Na2CO3 solution for 36h | 6.35 | MC |
| SRR6168980 | leaf | none (control) | 0.60 | MC |
| SRR6168983 | leaf | 0.5% Na2CO3 solution for 36h | 0.54 | MC |
| SRR6168984 | leaf | 0.5% Na2CO3 solution for 36h | 0.63 | MC |
| SRR5110430 | panicle | Dawn | 3.98 | MC |
| SRR5110432 | panicle | Dawn | 0.46 | MC |
| SRR5110438 | panicle | Dawn + 7h | 3.40 | MC |
| SRR5110439 | panicle | Dawn + 7h | 2.06 | MC |
| SRR5110440 | panicle | Dawn + 7h | 3.77 | MC |
| SRR5110445 | panicle | Dusk | 3.96 | MC |
| SRR5110446 | panicle | Dusk | 1.96 | MC |
| SRR5110452 | panicle | Dawn + 14h | 1.86 | MC |
| SRR5110456 | panicle | Dawn + 17.5h | 3.39 | MC |
| SRR5110458 | panicle | Dawn + 21h | 0.86 | MC |
| SRR1213696 | endosprem | wt(milk grains) | 0.39 | MC |
| SRR1633182 | panicle | WT | 0.64 | MC |
| SRR1633185 | panicle | WT | 1.27 | MC |
| SRR5278374 | pistil | "Balilla,S1" | 0.31 | MC |
| SRR5278375 | pistil | "Balilla,S1" | 0.36 | MC |
| SRR5278377 | pistil | "Balilla,S2" | 0.39 | MC |
| SRR5278378 | pistil | "Balilla,S3" | 1.09 | MC |
| SRR5278379 | pistil | "Balilla,S3" | 0.72 | MC |
| SRR5126155 | root | "mock,7_days" | 0.29 | MC |
| SRR5126167 | root | "mock,14_days" | 0.67 | MC |
| SRR3472897 | root | nontransgenic_rice_plant | 0.73 | MC |
| SRR1213694 | root | wt | 0.28 | MC |
| SRR4947494 | root | control | 0.91 | MC |
| SRR4947506 | root | Al | 0.65 | MC |
| SRR6502092 | root | 100 mM NaCl | 1.97 | MC |
| SRR6502093 | root | 100 mM NaCl | 1.01 | MC |
| SRR6502094 | root | control | 0.72 | MC |
| SRR6502095 | root | control | 1.36 | MC |
| SRR6502096 | root | control | 0.47 | MC |
| SRR6502103 | root | 100 mM NaCl | 0.47 | MC |
| SRR6502104 | root | 100 mM NaCl | 2.11 | MC |
| SRR6502105 | root | 100 mM NaCl | 0.56 | MC |
| SRR6502106 | root | control | 1.63 | MC |
| SRR1740435 | root_differentiation_zone | wt | 0.66 | MC |
| SRR1740436 | root_differentiation_zone | wt | 0.89 | MC |
| SRR1740431 | root_elongation_zone | wt | 1.24 | MC |
| SRR1740432 | root_elongation_zone | wt | 0.35 | MC |
| SRR1740433 | root_elongation_zone | wt | 0.29 | MC |
| SRR1740429 | root_meristematic_zone | wt | 0.26 | MC |
| SRR2154085 | seedling | wt | 3.43 | MC |
| SRR358794 | seedling | wt | 6.43 | MC |
| SRR5052708 | shoot_apical_meristem | 0_days_after_shift | 0.60 | MC |
| SRR5052719 | shoot_apical_meristem | 8_days_after_shift | 0.66 | MC |
| SRR5052722 | shoot_apical_meristem | 12_days_after_shift | 0.56 | MC |
| SRR1617549 | shoot_apical_meristem | no collect | 3.78 | MC |
| SRR1617550 | shoot_apical_meristem | no collect | 2.68 | MC |
| SRR1617559 | shoot_apical_meristem | no collect | 1.03 | MC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 0.28 | MC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 0.53 | MC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 0.49 | MC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 0.50 | MC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 0.92 | MC |
| SRR7760291 | spikelet | control condition (29C) for 7 hrs | 3.63 | MC |
| SRR7760299 | spikelet | control condition (29C) for 7 hrs | 2.08 | MC |