| SRR4457249 | 2nd_leaf | DAH4 | 4.05 | MC |
| SRR4457250 | 2nd_leaf | DAH4 | 2.85 | MC |
| SRR4457251 | 2nd_leaf | DAH4 | 3.14 | MC |
| SRR4457253 | 2nd_leaf | DAH12 | 1.64 | MC |
| SRR4457254 | 2nd_leaf | DAH12 | 0.87 | MC |
| SRR4457255 | 2nd_leaf | DAH20 | 0.88 | MC |
| SRR4457256 | 2nd_leaf | DAH20 | 0.89 | MC |
| SRR4457257 | 2nd_leaf | DAH20 | 3.94 | MC |
| SRR4457258 | 2nd_leaf | DAH28 | 2.90 | MC |
| SRR4457259 | 2nd_leaf | DAH28 | 0.85 | MC |
| SRR4457260 | 2nd_leaf | DAH28 | 2.18 | MC |
| SRR4457261 | 2nd_leaf | DAH36 | 5.31 | MC |
| SRR4457262 | 2nd_leaf | DAH36 | 0.96 | MC |
| SRR4457263 | 2nd_leaf | DAH36 | 2.42 | MC |
| SRR4457264 | 2nd_leaf | DAH44 | 3.45 | MC |
| SRR4457265 | 2nd_leaf | DAH44 | 2.42 | MC |
| SRR4457266 | 2nd_leaf | DAH44 | 4.34 | MC |
| SRR3745125 | anther | wt | 0.70 | MC |
| SRR3745126 | anther | wt | 1.12 | MC |
| SRR358795 | callus | wt | 4.33 | MC |
| SRR358796 | callus | wt | 6.75 | MC |
| SRR358797 | callus | wt | 5.36 | MC |
| SRR358798 | callus | wt | 3.83 | MC |
| SRR6320473 | carpel | wt | 1.74 | MC |
| SRR6320498 | carpel | wt | 1.01 | MC |
| SRR5560728 | caryopsis | wild_type | 0.70 | MC |
| SRR4947495 | root | control | 0.63 | MC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 0.51 | MC |
| SRR7265400 | coleoptile | 2dA | 0.81 | MC |
| SRR7265401 | coleoptile | 2dA | 0.78 | MC |
| SRR7265402 | coleoptile | 2dA | 2.07 | MC |
| SRR7265403 | coleoptile | 2dN | 0.49 | MC |
| SRR7265404 | coleoptile | 2dN | 1.41 | MC |
| SRR7265405 | coleoptile | 2dN | 0.29 | MC |
| SRR7265406 | coleoptile | 3dA | 1.02 | MC |
| SRR7265407 | coleoptile | 3dA | 1.08 | MC |
| SRR7265408 | coleoptile | 3dA | 0.66 | MC |
| SRR7265410 | coleoptile | 3dN | 0.77 | MC |
| SRR7265411 | coleoptile | 3dN | 0.92 | MC |
| SRR7265412 | coleoptile | 4dA | 0.49 | MC |
| SRR7265413 | coleoptile | 4dA | 0.89 | MC |
| SRR7265414 | coleoptile | 4dA | 0.52 | MC |
| SRR7265417 | coleoptile | 4dN | 1.16 | MC |
| SRR7265418 | coleoptile | 3dN1dA | 0.94 | MC |
| SRR7265419 | coleoptile | 3dN1dA | 1.58 | MC |
| SRR7265420 | coleoptile | 3dN1dA | 0.60 | MC |
| SRR4104646 | crown | "Zn_Efficient,8_days_of_treatment" | 0.41 | MC |
| SRR7265374 | embryo | dry seed 0 h | 3.85 | MC |
| SRR7265375 | embryo | dry seed 0 h | 1.09 | MC |
| SRR7265376 | embryo | 1hA | 3.06 | MC |
| SRR7265377 | embryo | 1hA | 2.32 | MC |
| SRR7265378 | embryo | 1hA | 2.76 | MC |
| SRR7265380 | embryo | 1hN | 3.28 | MC |
| SRR7265381 | embryo | 1hN | 2.38 | MC |
| SRR7265382 | embryo | 3hA | 3.53 | MC |
| SRR7265383 | embryo | 3hA | 2.30 | MC |
| SRR7265384 | embryo | 3hA | 2.77 | MC |
| SRR7265385 | embryo | 3hN | 1.91 | MC |
| SRR7265386 | embryo | 3hN | 1.79 | MC |
| SRR7265387 | embryo | 3hN | 2.22 | MC |
| SRR7265388 | embryo | 12hA | 0.84 | MC |
| SRR7265389 | embryo | 12hA | 1.46 | MC |
| SRR7265390 | embryo | 12hA | 0.92 | MC |
| SRR7265391 | embryo | 12hN | 1.45 | MC |
| SRR7265392 | embryo | 12hN | 1.35 | MC |
| SRR7265393 | embryo | 12hN | 1.88 | MC |
| SRR7265394 | embryo | 24hA | 1.13 | MC |
| SRR7265395 | embryo | 24hA | 1.47 | MC |
| SRR7265396 | embryo | 24hA | 0.73 | MC |
| SRR7265397 | embryo | 24hN | 0.79 | MC |
| SRR7265398 | embryo | 24hN | 1.85 | MC |
| SRR7265399 | embryo | 24hN | 1.82 | MC |
| SRR2338866 | endosprem | control | 2.22 | MC |
| SRR2338867 | endosprem | control | 0.67 | MC |
| SRR2338868 | endosprem | high_temperature | 1.58 | MC |
| SRR2338869 | endosprem | high_temperature | 0.83 | MC |
| SRR976168 | flag_leaf | wild_type | 1.00 | MC |
| SRR4457233 | flag_leaf | DAH4 | 2.65 | MC |
| SRR4457234 | flag_leaf | DAH12 | 2.80 | MC |
| SRR4457235 | flag_leaf | DAH12 | 2.57 | MC |
| SRR4457237 | flag_leaf | DAH20 | 2.31 | MC |
| SRR4457238 | flag_leaf | DAH20 | 0.36 | MC |
| SRR4457239 | flag_leaf | DAH20 | 3.15 | MC |
| SRR4457240 | flag_leaf | DAH28 | 2.32 | MC |
| SRR4457241 | flag_leaf | DAH28 | 0.43 | MC |
| SRR4457242 | flag_leaf | DAH28 | 2.90 | MC |
| SRR4457243 | flag_leaf | DAH36 | 2.73 | MC |
| SRR4457244 | flag_leaf | DAH36 | 0.78 | MC |
| SRR4457245 | flag_leaf | DAH36 | 2.17 | MC |
| SRR4457246 | flag_leaf | DAH44 | 1.05 | MC |
| SRR4457247 | flag_leaf | DAH44 | 4.24 | MC |
| SRR4457248 | flag_leaf | DAH44 | 2.67 | MC |
| SRR1213690 | flower | wt(flower buds) | 2.50 | MC |
| SRR1213691 | flower | wt | 0.51 | MC |
| SRR8240825 | leaf | wild_type | 2.14 | MC |
| SRR8240820 | leaf | wild_type | 0.65 | MC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 2.66 | MC |
| SRR2922622 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 5.91 | MC |
| SRR2922623 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 4.03 | MC |
| SRR2922624 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 1.88 | MC |
| SRR1952778 | leaf | 48_hrs_after_inoculation_with_BLS256 | 5.17 | MC |
| SRR1952779 | leaf | 48_hrs_after_inoculation_with_BLS256 | 8.57 | MC |
| SRR1952780 | leaf | 48_hrs_after_inoculation_with_BLS256 | 3.46 | MC |
| SRR1952782 | leaf | 48_hrs_after_inoculation_with_BLS279 | 5.15 | MC |
| SRR1952783 | leaf | 48_hrs_after_inoculation_with_BLS279 | 1.21 | MC |
| SRR1952784 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 4.87 | MC |
| SRR1952785 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 1.51 | MC |
| SRR1952786 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 1.70 | MC |
| SRR1952791 | leaf | 48_hrs_after_inoculation_with_L8 | 4.92 | MC |
| SRR1952792 | leaf | 48_hrs_after_inoculation_with_L8 | 1.53 | MC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 1.12 | MC |
| SRR1952795 | leaf | 48_hrs_after_inoculation_with_RS105 | 4.40 | MC |
| SRR1952796 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 3.91 | MC |
| SRR1952797 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 4.51 | MC |
| SRR1952798 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 1.81 | MC |
| SRR1952799 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 4.76 | MC |
| SRR1952800 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 4.86 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 2.12 | MC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 1.37 | MC |
| SRR1952803 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 3.95 | MC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 1.61 | MC |
| SRR1952808 | leaf | 48_hrs_after_mock_inoculation | 0.87 | MC |
| SRR1952809 | leaf | 48_hrs_after_mock_inoculation | 4.07 | MC |
| SRR1952810 | leaf | 48_hrs_after_mock_inoculation | 0.89 | MC |
| SRR1761789 | leaf | "wild_type,drought,2" | 1.11 | MC |
| SRR1761790 | leaf | "wild_type,control,2" | 5.92 | MC |
| SRR1761781 | leaf | "wild_type,drought,1" | 1.11 | MC |
| SRR1761782 | leaf | "wild_type,control,1" | 5.92 | MC |
| SRR1761529 | leaf | drought | 1.11 | MC |
| SRR1761530 | leaf | control | 5.92 | MC |
| SRR504365 | leaf | wt | 2.25 | MC |
| SRR6417965 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 2.87 | MC |
| SRR6417966 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 0.55 | MC |
| SRR3209769 | leaf | Watered;Long_Day | 3.02 | MC |
| SRR3209770 | leaf | Watered;Long_Day | 2.47 | MC |
| SRR3209772 | leaf | Drought;Long_Day | 4.12 | MC |
| SRR3209773 | leaf | Watered;Short_Day | 2.31 | MC |
| SRR3209774 | leaf | Watered;Short_Day | 3.33 | MC |
| SRR3209775 | leaf | Drought;Short_Day | 3.77 | MC |
| SRR3209776 | leaf | Drought;Short_Day | 3.63 | MC |
| SRR3209777 | leaf | Watered;Long_Day | 3.21 | MC |
| SRR3209778 | leaf | Drought;Long_Day | 3.31 | MC |
| SRR3209779 | leaf | Watered;Short_Day | 2.38 | MC |
| SRR8611902 | leaf | Non-inoculated | 0.33 | MC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 0.48 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 0.83 | MC |
| SRR1213693 | leaf | wt | 0.82 | MC |
| SRR6502086 | leaf | 100 mM NaCl | 4.27 | MC |
| SRR6168975 | leaf | none (control) | 0.58 | MC |
| SRR6168977 | leaf | 0.5% Na2CO3 solution for 36h | 0.34 | MC |
| SRR6168979 | leaf | none (control) | 0.86 | MC |
| SRR6168980 | leaf | none (control) | 0.43 | MC |
| SRR6168981 | leaf | none (control) | 2.48 | MC |
| SRR6168982 | leaf | 0.5% Na2CO3 solution for 36h | 1.33 | MC |
| SRR8582888 | panicle | AM | 2.22 | MC |
| SRR8582889 | panicle | AM | 0.64 | MC |
| SRR8582891 | panicle | PM | 4.74 | MC |
| SRR8582892 | panicle | PM | 2.41 | MC |
| SRR5110431 | panicle | Dawn | 0.57 | MC |
| SRR5110432 | panicle | Dawn | 0.67 | MC |
| SRR4947496 | root | control | 4.51 | MC |
| SRR5110434 | panicle | Dawn + 3.5h | 0.63 | MC |
| SRR5110435 | panicle | Dawn + 3.5h | 0.54 | MC |
| SRR5110438 | panicle | Dawn + 7h | 0.57 | MC |
| SRR5110440 | panicle | Dawn + 7h | 0.80 | MC |
| SRR5110441 | panicle | Dawn + 10.5h | 0.56 | MC |
| SRR5110444 | panicle | Dawn + 10.5h | 0.56 | MC |
| SRR5110447 | panicle | Dusk | 0.43 | MC |
| SRR5110451 | panicle | Dawn + 14h | 0.25 | MC |
| SRR5110453 | panicle | Dawn + 17.5h | 0.34 | MC |
| SRR5110454 | panicle | Dawn + 17.5h | 0.71 | MC |
| SRR5110458 | panicle | Dawn + 21h | 0.53 | MC |
| SRR5110460 | panicle | Dawn + 21h | 0.85 | MC |
| SRR1213697 | endosprem | wt(mature seeds) | 0.66 | MC |
| SRR1633182 | panicle | WT | 1.44 | MC |
| SRR1633185 | panicle | WT | 2.21 | MC |
| SRR5278374 | pistil | "Balilla,S1" | 3.26 | MC |
| SRR5278375 | pistil | "Balilla,S1" | 3.04 | MC |
| SRR5278379 | pistil | "Balilla,S3" | 2.64 | MC |
| SRR5126147 | root | "mock,1_day" | 0.75 | MC |
| SRR5126148 | root | "mock,1_day" | 1.22 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 2.46 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 1.75 | MC |
| SRR5126153 | root | "mock,7_days" | 1.66 | MC |
| SRR5126155 | root | "mock,7_days" | 1.08 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 4.14 | MC |
| SRR5126167 | root | "mock,14_days" | 1.32 | MC |
| SRR5126169 | root | "mock,14_days" | 2.21 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 3.93 | MC |
| SRR3472897 | root | nontransgenic_rice_plant | 0.90 | MC |
| SRR1213694 | root | wt | 0.21 | MC |
| SRR1213695 | root | wt | 1.22 | MC |
| SRR4947482 | root | Al | 0.48 | MC |
| SRR4947484 | root | Al | 1.71 | MC |
| SRR4947488 | root | control | 3.98 | MC |
| SRR4947489 | root | control | 3.52 | MC |
| SRR4947490 | root | Al | 0.77 | MC |
| SRR4947491 | root | Al | 0.71 | MC |
| SRR4947501 | root | Al | 0.90 | MC |
| SRR4947503 | root | control | 0.55 | MC |
| SRR4947504 | root | control | 3.47 | MC |
| SRR4947505 | root | control | 4.40 | MC |
| SRR4947507 | root | Al | 0.99 | MC |
| SRR4947509 | root | Al | 3.69 | MC |
| SRR6502094 | root | control | 1.77 | MC |
| SRR6502095 | root | control | 3.23 | MC |
| SRR6502108 | root | control | 3.29 | MC |
| SRR1740436 | root_differentiation_zone | wt | 0.55 | MC |
| SRR1740433 | root_elongation_zone | wt | 0.97 | MC |
| SRR1740430 | root_meristematic_zone | wt | 1.39 | MC |
| SRR2154086 | seedling | wt | 0.57 | MC |
| SRR2154083 | seedling | wt | 0.38 | MC |
| SRR2154085 | seedling | wt | 2.40 | MC |
| SRR3098741 | seedling | wt | 1.24 | MC |
| SRR3098742 | seedling | wt | 1.42 | MC |
| SRR3098743 | seedling | wt | 2.26 | MC |
| SRR2857719 | seedling | drought_stress_0h | 3.55 | MC |
| SRR2857720 | seedling | drought_stress_1h | 0.84 | MC |
| SRR2857721 | seedling | drought_stress_6h | 2.03 | MC |
| SRR1944582 | seedling | "with_chilling_teatment_(4C,33h)" | 2.29 | MC |
| SRR358791 | seedling | wt | 3.48 | MC |
| SRR358792 | seedling | wt | 4.20 | MC |
| SRR358793 | seedling | wt | 5.86 | MC |
| SRR358794 | seedling | wt | 3.65 | MC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 5.45 | MC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 5.65 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 8.00 | MC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 6.06 | MC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 3.01 | MC |
| SRR3950244 | shoot | Drought_during_3_days;Fr13_inoculated | 0.35 | MC |
| SRR3950249 | shoot | No_DIS;Fr13_inoculated | 0.46 | MC |
| SRR3950253 | shoot | No_DIS;_mock_inoculated | 0.46 | MC |
| SRR3950254 | shoot | No_DIS;_mock_inoculated | 0.49 | MC |
| SRR5796941 | shoot | "Control,22C for 10 min" | 2.94 | MC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 1.53 | MC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 0.55 | MC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 1.42 | MC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 1.77 | MC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 1.28 | MC |
| SRR5796954 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 1.92 | MC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 2.24 | MC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 2.32 | MC |
| SRR5052708 | shoot_apical_meristem | 0_days_after_shift | 2.86 | MC |
| SRR5052709 | shoot_apical_meristem | 0_days_after_shift | 1.33 | MC |
| SRR5052711 | shoot_apical_meristem | 4_days_after_shift | 2.89 | MC |
| SRR5052714 | shoot_apical_meristem | 4_days_after_shift | 0.92 | MC |
| SRR5052716 | shoot_apical_meristem | 8_days_after_shift | 0.89 | MC |
| SRR5052719 | shoot_apical_meristem | 8_days_after_shift | 7.11 | MC |
| SRR5052720 | shoot_apical_meristem | 8_days_after_shift | 1.44 | MC |
| SRR5052721 | shoot_apical_meristem | 12_days_after_shift | 5.47 | MC |
| SRR5052722 | shoot_apical_meristem | 12_days_after_shift | 7.78 | MC |
| SRR5052723 | shoot_apical_meristem | 12_days_after_shift | 5.49 | MC |
| SRR5052724 | shoot_apical_meristem | 0_days_after_shift | 6.53 | MC |
| SRR5052725 | shoot_apical_meristem | 0_days_after_shift | 5.77 | MC |
| SRR5052726 | shoot_apical_meristem | 0_days_after_shift | 0.97 | MC |
| SRR5052727 | shoot_apical_meristem | 4_days_after_shift | 5.22 | MC |
| SRR5052728 | shoot_apical_meristem | 4_days_after_shift | 5.33 | MC |
| SRR5052730 | shoot_apical_meristem | 4_days_after_shift | 5.41 | MC |
| SRR5052731 | shoot_apical_meristem | 8_days_after_shift | 1.13 | MC |
| SRR5052732 | shoot_apical_meristem | 8_days_after_shift | 1.54 | MC |
| SRR5052733 | shoot_apical_meristem | 8_days_after_shift | 7.23 | MC |
| SRR5052734 | shoot_apical_meristem | 12_days_after_shift | 5.83 | MC |
| SRR5052735 | shoot_apical_meristem | 12_days_after_shift | 4.14 | MC |
| SRR1617549 | shoot_apical_meristem | no collect | 6.38 | MC |
| SRR1617550 | shoot_apical_meristem | no collect | 7.26 | MC |
| SRR1617556 | shoot_apical_meristem | no collect | 6.98 | MC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 1.08 | MC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 0.63 | MC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 1.86 | MC |
| SRR7760294 | spikelet | high temperature treatment (38C) for 7 hrs | 0.52 | MC |
| SRR7760295 | spikelet | high temperature treatment (38C) for 7 hrs | 0.70 | MC |
| SRR7760296 | spikelet | high temperature treatment (38C) for 7 hrs | 0.93 | MC |
| SRR7760297 | spikelet | control condition (29C) for 7 hrs | 0.94 | MC |
| SRR7760300 | spikelet | high temperature treatment (38C) for 7 hrs | 0.57 | MC |
| SRR7760301 | spikelet | high temperature treatment (38C) for 7 hrs | 0.49 | MC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 0.67 | MC |