| SRR4457252 | 2nd_leaf | DAH12 | 0.24 | MC |
| SRR4457253 | 2nd_leaf | DAH12 | 0.28 | MC |
| SRR4457254 | 2nd_leaf | DAH12 | 0.39 | MC |
| SRR4457255 | 2nd_leaf | DAH20 | 0.44 | MC |
| SRR4457257 | 2nd_leaf | DAH20 | 0.49 | MC |
| SRR4457258 | 2nd_leaf | DAH28 | 0.53 | MC |
| SRR4457259 | 2nd_leaf | DAH28 | 0.39 | MC |
| SRR4457266 | 2nd_leaf | DAH44 | 0.70 | MC |
| SRR358795 | callus | wt | 4.34 | MC |
| SRR358798 | callus | wt | 3.05 | MC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 0.45 | MC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 1.36 | MC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 0.42 | MC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 0.41 | MC |
| SRR4104637 | crown | "Zn_deficiency,8_days_of_treatment" | 0.60 | MC |
| SRR4104638 | crown | "Zn_deficiency,8_days_of_treatment" | 0.84 | MC |
| SRR4104647 | crown | "Zn_Efficient,8_days_of_treatment" | 0.90 | MC |
| SRR4104640 | crown | "Zn_deficiency,8_days_of_treatment" | 0.50 | MC |
| SRR4104641 | crown | "Zn_deficiency,8_days_of_treatment" | 0.48 | MC |
| SRR4104643 | crown | "Zn_Efficient,8_days_of_treatment" | 0.39 | MC |
| SRR4104644 | crown | "Zn_Efficient,8_days_of_treatment" | 0.43 | MC |
| SRR4104646 | crown | "Zn_Efficient,8_days_of_treatment" | 1.24 | MC |
| SRR2338867 | endosprem | control | 0.59 | MC |
| SRR4457241 | flag_leaf | DAH28 | 0.65 | MC |
| SRR4457243 | flag_leaf | DAH36 | 0.36 | MC |
| SRR4457245 | flag_leaf | DAH36 | 0.44 | MC |
| SRR4457246 | flag_leaf | DAH44 | 0.67 | MC |
| SRR1213690 | flower | wt(flower buds) | 0.30 | MC |
| SRR8240824 | leaf | wild_type | 0.26 | MC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 0.79 | MC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 0.44 | MC |
| SRR2922622 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 0.83 | MC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 0.28 | MC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.20 | MC |
| SRR504365 | leaf | wt | 0.24 | MC |
| SRR3209778 | leaf | Drought;Long_Day | 0.30 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 0.26 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 0.37 | MC |
| SRR1213693 | leaf | wt | 0.36 | MC |
| SRR6502097 | leaf | 100 mM NaCl | 0.56 | MC |
| SRR6502102 | leaf | control | 0.42 | MC |
| SRR5856927 | leaf | control | 0.60 | MC |
| SRR5856928 | leaf | control | 0.49 | MC |
| SRR5856929 | leaf | control | 0.52 | MC |
| SRR5856932 | leaf | salt | 0.43 | MC |
| SRR5856933 | leaf | control | 0.55 | MC |
| SRR5856934 | leaf | control | 0.69 | MC |
| SRR5856935 | leaf | control | 0.54 | MC |
| SRR5856936 | leaf | salt | 0.35 | MC |
| SRR5856937 | leaf | salt | 0.25 | MC |
| SRR5856938 | leaf | salt | 0.36 | MC |
| SRR6168973 | leaf | none (control) | 0.29 | MC |
| SRR6168984 | leaf | 0.5% Na2CO3 solution for 36h | 0.22 | MC |
| SRR5110437 | panicle | Dawn + 7h | 0.45 | MC |
| SRR5110443 | panicle | Dawn + 10.5h | 0.46 | MC |
| SRR5110444 | panicle | Dawn + 10.5h | 0.55 | MC |
| SRR5110448 | panicle | Dusk | 0.78 | MC |
| SRR5110453 | panicle | Dawn + 17.5h | 0.52 | MC |
| SRR5110454 | panicle | Dawn + 17.5h | 0.38 | MC |
| SRR5110459 | panicle | Dawn + 21h | 0.45 | MC |
| SRR1213696 | endosprem | wt(milk grains) | 0.15 | MC |
| SRR5278377 | pistil | "Balilla,S2" | 0.50 | MC |
| SRR5278378 | pistil | "Balilla,S3" | 0.86 | MC |
| SRR5278379 | pistil | "Balilla,S3" | 0.88 | MC |
| SRR5126148 | root | "mock,1_day" | 3.14 | MC |
| SRR5126149 | root | "mock,1_day" | 4.50 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 1.18 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 1.50 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 0.62 | MC |
| SRR5126153 | root | "mock,7_days" | 2.66 | MC |
| SRR5126155 | root | "mock,7_days" | 4.35 | MC |
| SRR5126157 | root | "mock,7_days" | 3.84 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 1.19 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 0.85 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 1.60 | MC |
| SRR5126165 | root | "mock,14_days" | 1.93 | MC |
| SRR5126167 | root | "mock,14_days" | 2.49 | MC |
| SRR5126169 | root | "mock,14_days" | 3.28 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 1.03 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 1.17 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 1.04 | MC |
| SRR1213694 | root | wt | 0.26 | MC |
| SRR1213695 | root | wt | 0.30 | MC |
| SRR4947493 | root | Al | 0.75 | MC |
| SRR4947499 | root | Al | 0.49 | MC |
| SRR4947501 | root | Al | 0.49 | MC |
| SRR6502091 | root | 100 mM NaCl | 2.40 | MC |
| SRR6502092 | root | 100 mM NaCl | 1.51 | MC |
| SRR6502093 | root | 100 mM NaCl | 1.62 | MC |
| SRR6502094 | root | control | 1.06 | MC |
| SRR6502095 | root | control | 0.58 | MC |
| SRR6502096 | root | control | 1.29 | MC |
| SRR6502103 | root | 100 mM NaCl | 0.82 | MC |
| SRR6502104 | root | 100 mM NaCl | 0.48 | MC |
| SRR6502105 | root | 100 mM NaCl | 0.70 | MC |
| SRR6502106 | root | control | 0.68 | MC |
| SRR6502107 | root | control | 0.77 | MC |
| SRR6502108 | root | control | 0.57 | MC |
| SRR1740432 | root_elongation_zone | wt | 0.26 | MC |
| SRR1740433 | root_elongation_zone | wt | 0.26 | MC |
| SRR2154086 | seedling | wt | 0.46 | MC |
| SRR2154083 | seedling | wt | 1.31 | MC |
| SRR2154084 | seedling | wt | 1.63 | MC |
| SRR2154087 | seedling | wt | 0.32 | MC |
| SRR3098742 | seedling | wt | 0.25 | MC |
| SRR3098743 | seedling | wt | 0.30 | MC |
| SRR2857719 | seedling | drought_stress_0h | 0.54 | MC |
| SRR358791 | seedling | wt | 0.60 | MC |
| SRR1288363 | shoot | "none,3_days_post_infection" | 2.54 | MC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 2.61 | MC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 4.97 | MC |
| SRR4841743 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 6.84 | MC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 0.50 | MC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 0.43 | MC |
| SRR5052708 | shoot_apical_meristem | 0_days_after_shift | 0.54 | MC |
| SRR1617558 | shoot_apical_meristem | no collect | 0.80 | MC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 1.08 | MC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 0.65 | MC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 1.16 | MC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 0.91 | MC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 1.47 | MC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 1.80 | MC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 1.85 | MC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 0.71 | MC |
| SRR7760295 | spikelet | high temperature treatment (38C) for 7 hrs | 0.42 | MC |