| SRR4457252 | 2nd_leaf | DAH12 | 0.65 | MC |
| SRR4457253 | 2nd_leaf | DAH12 | 0.40 | MC |
| SRR4457254 | 2nd_leaf | DAH12 | 0.64 | MC |
| SRR4457257 | 2nd_leaf | DAH20 | 0.62 | MC |
| SRR4457258 | 2nd_leaf | DAH28 | 0.25 | MC |
| SRR4457259 | 2nd_leaf | DAH28 | 0.78 | MC |
| SRR4457260 | 2nd_leaf | DAH28 | 0.97 | MC |
| SRR4457261 | 2nd_leaf | DAH36 | 1.11 | MC |
| SRR4457266 | 2nd_leaf | DAH44 | 1.43 | MC |
| SRR358795 | callus | wt | 6.98 | MC |
| SRR358796 | callus | wt | 7.22 | MC |
| SRR5560729 | caryopsis | wild_type | 3.33 | MC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 1.82 | MC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 3.20 | MC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 3.03 | MC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 0.57 | MC |
| SRR7265404 | coleoptile | 2dN | 0.31 | MC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 1.31 | MC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 1.58 | MC |
| SRR7265378 | embryo | 1hA | 0.46 | MC |
| SRR7265382 | embryo | 3hA | 2.82 | MC |
| SRR7265383 | embryo | 3hA | 1.30 | MC |
| SRR7265384 | embryo | 3hA | 2.25 | MC |
| SRR7265388 | embryo | 12hA | 4.24 | MC |
| SRR7265393 | embryo | 12hN | 0.56 | MC |
| SRR7265394 | embryo | 24hA | 3.90 | MC |
| SRR2338866 | endosprem | control | 1.24 | MC |
| SRR2338868 | endosprem | high_temperature | 0.99 | MC |
| SRR976168 | flag_leaf | wild_type | 2.25 | MC |
| SRR4457231 | flag_leaf | DAH4 | 0.50 | MC |
| SRR4457233 | flag_leaf | DAH4 | 0.34 | MC |
| SRR4457234 | flag_leaf | DAH12 | 0.49 | MC |
| SRR4457235 | flag_leaf | DAH12 | 0.82 | MC |
| SRR4457236 | flag_leaf | DAH12 | 0.71 | MC |
| SRR4457237 | flag_leaf | DAH20 | 1.18 | MC |
| SRR4457238 | flag_leaf | DAH20 | 1.07 | MC |
| SRR4457239 | flag_leaf | DAH20 | 1.11 | MC |
| SRR4457245 | flag_leaf | DAH36 | 0.42 | MC |
| SRR8060837 | leaf | wild_type | 2.64 | MC |
| SRR8240826 | leaf | wild_type | 1.59 | MC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 2.08 | MC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 0.90 | MC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 1.36 | MC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 3.60 | MC |
| SRR2922623 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 2.70 | MC |
| SRR2922624 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 2.25 | MC |
| SRR1952779 | leaf | 48_hrs_after_inoculation_with_BLS256 | 3.31 | MC |
| SRR1952780 | leaf | 48_hrs_after_inoculation_with_BLS256 | 2.95 | MC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 1.75 | MC |
| SRR1952782 | leaf | 48_hrs_after_inoculation_with_BLS279 | 3.71 | MC |
| SRR1952784 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 0.62 | MC |
| SRR1952786 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 2.12 | MC |
| SRR1952787 | leaf | 48_hrs_after_inoculation_with_B8_12 | 3.88 | MC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 3.04 | MC |
| SRR1952790 | leaf | 48_hrs_after_inoculation_with_L8 | 0.49 | MC |
| SRR1952791 | leaf | 48_hrs_after_inoculation_with_L8 | 3.96 | MC |
| SRR1952792 | leaf | 48_hrs_after_inoculation_with_L8 | 0.96 | MC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 2.09 | MC |
| SRR1952794 | leaf | 48_hrs_after_inoculation_with_RS105 | 3.93 | MC |
| SRR1952795 | leaf | 48_hrs_after_inoculation_with_RS105 | 1.05 | MC |
| SRR1952796 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 2.14 | MC |
| SRR1952797 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 2.12 | MC |
| SRR1952798 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 3.56 | MC |
| SRR1952799 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 4.04 | MC |
| SRR1952803 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 5.36 | MC |
| SRR1952808 | leaf | 48_hrs_after_mock_inoculation | 2.04 | MC |
| SRR1952809 | leaf | 48_hrs_after_mock_inoculation | 0.98 | MC |
| SRR1952810 | leaf | 48_hrs_after_mock_inoculation | 1.07 | MC |
| SRR1761788 | leaf | "wild_type,drought,2" | 3.30 | MC |
| SRR1761780 | leaf | "wild_type,drought,1" | 3.30 | MC |
| SRR1761528 | leaf | drought | 3.30 | MC |
| SRR504365 | leaf | wt | 0.89 | MC |
| SRR6417964 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 2.28 | MC |
| SRR6417965 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 1.87 | MC |
| SRR6417966 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 1.03 | MC |
| SRR3209770 | leaf | Watered;Long_Day | 0.56 | MC |
| SRR3209771 | leaf | Drought;Long_Day | 3.69 | MC |
| SRR3209773 | leaf | Watered;Short_Day | 0.22 | MC |
| SRR3209775 | leaf | Drought;Short_Day | 1.03 | MC |
| SRR3209776 | leaf | Drought;Short_Day | 1.49 | MC |
| SRR3209778 | leaf | Drought;Long_Day | 1.63 | MC |
| SRR3209780 | leaf | Drought;Short_Day | 1.91 | MC |
| SRR8611900 | leaf | Non-inoculated | 1.79 | MC |
| SRR8611901 | leaf | Non-inoculated | 2.34 | MC |
| SRR8611902 | leaf | Non-inoculated | 2.46 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 3.65 | MC |
| SRR1213692 | leaf | wt | 0.88 | MC |
| SRR6502085 | leaf | 100 mM NaCl | 3.96 | MC |
| SRR6502088 | leaf | control | 2.84 | MC |
| SRR6502089 | leaf | control | 1.91 | MC |
| SRR6502090 | leaf | control | 1.98 | MC |
| SRR6168973 | leaf | none (control) | 0.61 | MC |
| SRR6168974 | leaf | none (control) | 1.20 | MC |
| SRR6168976 | leaf | 0.5% Na2CO3 solution for 36h | 0.42 | MC |
| SRR6168977 | leaf | 0.5% Na2CO3 solution for 36h | 1.16 | MC |
| SRR6168982 | leaf | 0.5% Na2CO3 solution for 36h | 2.57 | MC |
| SRR6168983 | leaf | 0.5% Na2CO3 solution for 36h | 0.49 | MC |
| SRR6168984 | leaf | 0.5% Na2CO3 solution for 36h | 2.12 | MC |
| SRR8582890 | panicle | AM | 0.62 | MC |
| SRR8582891 | panicle | PM | 0.72 | MC |
| SRR8582893 | panicle | PM | 0.26 | MC |
| SRR5110430 | panicle | Dawn | 1.91 | MC |
| SRR5110431 | panicle | Dawn | 2.28 | MC |
| SRR4947496 | root | control | 1.26 | MC |
| SRR5110433 | panicle | Dawn + 3.5h | 2.23 | MC |
| SRR5110434 | panicle | Dawn + 3.5h | 4.75 | MC |
| SRR5110435 | panicle | Dawn + 3.5h | 1.79 | MC |
| SRR5110436 | panicle | Dawn + 3.5h | 3.27 | MC |
| SRR5110438 | panicle | Dawn + 7h | 2.75 | MC |
| SRR5110439 | panicle | Dawn + 7h | 5.09 | MC |
| SRR5110444 | panicle | Dawn + 10.5h | 5.04 | MC |
| SRR5110445 | panicle | Dusk | 2.32 | MC |
| SRR5110447 | panicle | Dusk | 2.54 | MC |
| SRR5110450 | panicle | Dawn + 14h | 2.32 | MC |
| SRR5110451 | panicle | Dawn + 14h | 3.54 | MC |
| SRR5110452 | panicle | Dawn + 14h | 4.83 | MC |
| SRR5110454 | panicle | Dawn + 17.5h | 2.75 | MC |
| SRR5110455 | panicle | Dawn + 17.5h | 3.33 | MC |
| SRR5110457 | panicle | Dawn + 21h | 2.31 | MC |
| SRR5110458 | panicle | Dawn + 21h | 2.21 | MC |
| SRR5110459 | panicle | Dawn + 21h | 3.16 | MC |
| SRR1213696 | endosprem | wt(milk grains) | 1.64 | MC |
| SRR5126149 | root | "mock,1_day" | 4.96 | MC |
| SRR5126153 | root | "mock,7_days" | 0.71 | MC |
| SRR5126155 | root | "mock,7_days" | 3.73 | MC |
| SRR5126169 | root | "mock,14_days" | 1.90 | MC |
| SRR4947480 | root | control | 0.84 | MC |
| SRR4947481 | root | control | 1.40 | MC |
| SRR4947484 | root | Al | 3.36 | MC |
| SRR4947485 | root | Al | 2.53 | MC |
| SRR4947489 | root | control | 0.55 | MC |
| SRR4947492 | root | Al | 2.17 | MC |
| SRR4947493 | root | Al | 1.44 | MC |
| SRR4947497 | root | control | 1.54 | MC |
| SRR4947500 | root | Al | 3.36 | MC |
| SRR4947501 | root | Al | 1.40 | MC |
| SRR4947504 | root | control | 1.41 | MC |
| SRR4947505 | root | control | 1.17 | MC |
| SRR4947508 | root | Al | 3.78 | MC |
| SRR4947509 | root | Al | 3.61 | MC |
| SRR6502091 | root | 100 mM NaCl | 2.04 | MC |
| SRR6502092 | root | 100 mM NaCl | 2.15 | MC |
| SRR6502093 | root | 100 mM NaCl | 2.05 | MC |
| SRR6502103 | root | 100 mM NaCl | 5.06 | MC |
| SRR6502106 | root | control | 1.48 | MC |
| SRR6502107 | root | control | 0.59 | MC |
| SRR6502108 | root | control | 2.68 | MC |
| SRR1740436 | root_differentiation_zone | wt | 0.68 | MC |
| SRR6441554 | seedling | wild_type | 1.70 | MC |
| SRR6441555 | seedling | wild_type | 0.63 | MC |
| SRR3098742 | seedling | wt | 2.61 | MC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 3.51 | MC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 4.61 | MC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 5.80 | MC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 4.09 | MC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 4.60 | MC |
| SRR4841741 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 2.28 | MC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 4.74 | MC |
| SRR4841743 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 5.84 | MC |
| SRR3950254 | shoot | No_DIS;_mock_inoculated | 0.75 | MC |
| SRR3950255 | shoot | No_DIS;_mock_inoculated | 2.57 | MC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 0.45 | MC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 1.06 | MC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 1.48 | MC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 0.64 | MC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 0.66 | MC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 0.73 | MC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 0.25 | MC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 0.38 | MC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 0.48 | MC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 0.31 | MC |
| SRR5796954 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 0.64 | MC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 0.91 | MC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 0.45 | MC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 1.15 | MC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 1.16 | MC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 1.49 | MC |
| SRR7760291 | spikelet | control condition (29C) for 7 hrs | 0.50 | MC |
| SRR7760292 | spikelet | control condition (29C) for 7 hrs | 0.54 | MC |
| SRR7760297 | spikelet | control condition (29C) for 7 hrs | 0.66 | MC |
| SRR7760300 | spikelet | high temperature treatment (38C) for 7 hrs | 0.93 | MC |
| SRR7760301 | spikelet | high temperature treatment (38C) for 7 hrs | 0.56 | MC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 0.38 | MC |