| SRR5560729 | caryopsis | wild_type | 4.46 | MC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 1.61 | MC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 1.93 | MC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 1.17 | MC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 1.13 | MC |
| SRR7265404 | coleoptile | 2dN | 0.37 | MC |
| SRR7265405 | coleoptile | 2dN | 0.34 | MC |
| SRR7265406 | coleoptile | 3dA | 0.37 | MC |
| SRR7265410 | coleoptile | 3dN | 0.46 | MC |
| SRR7265411 | coleoptile | 3dN | 0.54 | MC |
| SRR7265413 | coleoptile | 4dA | 0.61 | MC |
| SRR7265414 | coleoptile | 4dA | 0.53 | MC |
| SRR7265415 | coleoptile | 4dN | 0.57 | MC |
| SRR7265416 | coleoptile | 4dN | 0.67 | MC |
| SRR7265417 | coleoptile | 4dN | 0.98 | MC |
| SRR7265420 | coleoptile | 3dN1dA | 0.57 | MC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 1.86 | MC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 2.05 | MC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 3.67 | MC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 1.95 | MC |
| SRR7265374 | embryo | dry seed 0 h | 0.42 | MC |
| SRR7265376 | embryo | 1hA | 0.49 | MC |
| SRR7265377 | embryo | 1hA | 0.57 | MC |
| SRR7265378 | embryo | 1hA | 0.36 | MC |
| SRR7265379 | embryo | 1hN | 0.60 | MC |
| SRR7265381 | embryo | 1hN | 0.42 | MC |
| SRR7265382 | embryo | 3hA | 0.44 | MC |
| SRR7265386 | embryo | 3hN | 0.45 | MC |
| SRR7265387 | embryo | 3hN | 0.34 | MC |
| SRR7265391 | embryo | 12hN | 0.55 | MC |
| SRR7265393 | embryo | 12hN | 0.56 | MC |
| SRR7265399 | embryo | 24hN | 0.40 | MC |
| SRR2338866 | endosprem | control | 4.00 | MC |
| SRR976168 | flag_leaf | wild_type | 0.47 | MC |
| SRR1213690 | flower | wt(flower buds) | 2.03 | MC |
| SRR1213691 | flower | wt | 2.10 | MC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 4.07 | MC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 3.81 | MC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 4.30 | MC |
| SRR2922622 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 4.04 | MC |
| SRR2922623 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 3.70 | MC |
| SRR2922624 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 3.12 | MC |
| SRR1952778 | leaf | 48_hrs_after_inoculation_with_BLS256 | 2.89 | MC |
| SRR1952779 | leaf | 48_hrs_after_inoculation_with_BLS256 | 2.21 | MC |
| SRR1952780 | leaf | 48_hrs_after_inoculation_with_BLS256 | 2.79 | MC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 3.48 | MC |
| SRR1952782 | leaf | 48_hrs_after_inoculation_with_BLS279 | 3.23 | MC |
| SRR1952783 | leaf | 48_hrs_after_inoculation_with_BLS279 | 3.69 | MC |
| SRR1952785 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 2.35 | MC |
| SRR1952786 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 3.04 | MC |
| SRR1952787 | leaf | 48_hrs_after_inoculation_with_B8_12 | 2.52 | MC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 2.87 | MC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 2.56 | MC |
| SRR1952790 | leaf | 48_hrs_after_inoculation_with_L8 | 4.05 | MC |
| SRR1952791 | leaf | 48_hrs_after_inoculation_with_L8 | 2.70 | MC |
| SRR1952792 | leaf | 48_hrs_after_inoculation_with_L8 | 2.13 | MC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 4.28 | MC |
| SRR1952794 | leaf | 48_hrs_after_inoculation_with_RS105 | 3.38 | MC |
| SRR1952795 | leaf | 48_hrs_after_inoculation_with_RS105 | 3.49 | MC |
| SRR1952797 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 3.11 | MC |
| SRR1952798 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 2.15 | MC |
| SRR1952799 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 5.96 | MC |
| SRR1952800 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 2.09 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 2.62 | MC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 4.21 | MC |
| SRR1952803 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 3.14 | MC |
| SRR1952804 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 2.92 | MC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 3.55 | MC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 1.63 | MC |
| SRR1952807 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 2.39 | MC |
| SRR1952809 | leaf | 48_hrs_after_mock_inoculation | 4.17 | MC |
| SRR1761788 | leaf | "wild_type,drought,2" | 0.88 | MC |
| SRR1761789 | leaf | "wild_type,drought,2" | 1.30 | MC |
| SRR1761790 | leaf | "wild_type,control,2" | 4.79 | MC |
| SRR1761791 | leaf | "wild_type,control,2" | 4.28 | MC |
| SRR1761780 | leaf | "wild_type,drought,1" | 0.88 | MC |
| SRR1761781 | leaf | "wild_type,drought,1" | 1.30 | MC |
| SRR1761782 | leaf | "wild_type,control,1" | 4.79 | MC |
| SRR1761783 | leaf | "wild_type,control,1" | 4.26 | MC |
| SRR1761528 | leaf | drought | 0.88 | MC |
| SRR1761529 | leaf | drought | 1.29 | MC |
| SRR1761530 | leaf | control | 4.79 | MC |
| SRR1761531 | leaf | control | 4.23 | MC |
| SRR504365 | leaf | wt | 1.75 | MC |
| SRR6417964 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 0.43 | MC |
| SRR6417965 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 0.59 | MC |
| SRR6417966 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 0.99 | MC |
| SRR6417967 | leaf | H2O_control | 1.78 | MC |
| SRR6417968 | leaf | H2O_control | 1.11 | MC |
| SRR6417969 | leaf | H2O_control | 3.21 | MC |
| SRR3209769 | leaf | Watered;Long_Day | 0.52 | MC |
| SRR3209770 | leaf | Watered;Long_Day | 0.37 | MC |
| SRR3209771 | leaf | Drought;Long_Day | 0.77 | MC |
| SRR3209772 | leaf | Drought;Long_Day | 0.99 | MC |
| SRR3209773 | leaf | Watered;Short_Day | 1.46 | MC |
| SRR3209774 | leaf | Watered;Short_Day | 1.84 | MC |
| SRR3209775 | leaf | Drought;Short_Day | 0.93 | MC |
| SRR3209776 | leaf | Drought;Short_Day | 0.74 | MC |
| SRR3209777 | leaf | Watered;Long_Day | 1.75 | MC |
| SRR3209778 | leaf | Drought;Long_Day | 0.78 | MC |
| SRR3209779 | leaf | Watered;Short_Day | 1.07 | MC |
| SRR3209780 | leaf | Drought;Short_Day | 2.40 | MC |
| SRR6168977 | leaf | 0.5% Na2CO3 solution for 36h | 1.69 | MC |
| SRR4947496 | root | control | 3.22 | MC |
| SRR1213696 | endosprem | wt(milk grains) | 1.30 | MC |
| SRR1213697 | endosprem | wt(mature seeds) | 0.24 | MC |
| SRR5126147 | root | "mock,1_day" | 1.92 | MC |
| SRR5126148 | root | "mock,1_day" | 1.92 | MC |
| SRR5126149 | root | "mock,1_day" | 2.68 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 2.57 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 3.09 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 2.60 | MC |
| SRR5126153 | root | "mock,7_days" | 1.46 | MC |
| SRR5126155 | root | "mock,7_days" | 2.88 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 1.90 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 3.15 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 1.83 | MC |
| SRR5126165 | root | "mock,14_days" | 2.14 | MC |
| SRR5126167 | root | "mock,14_days" | 2.42 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 2.10 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 2.74 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 3.11 | MC |
| SRR3472897 | root | nontransgenic_rice_plant | 0.36 | MC |
| SRR1213694 | root | wt | 1.42 | MC |
| SRR4947480 | root | control | 2.81 | MC |
| SRR4947481 | root | control | 2.46 | MC |
| SRR4947484 | root | Al | 2.14 | MC |
| SRR4947485 | root | Al | 2.57 | MC |
| SRR4947488 | root | control | 2.79 | MC |
| SRR4947489 | root | control | 3.81 | MC |
| SRR4947492 | root | Al | 2.37 | MC |
| SRR4947493 | root | Al | 3.01 | MC |
| SRR4947497 | root | control | 2.44 | MC |
| SRR4947500 | root | Al | 2.36 | MC |
| SRR4947501 | root | Al | 2.10 | MC |
| SRR4947504 | root | control | 2.17 | MC |
| SRR4947505 | root | control | 2.03 | MC |
| SRR4947508 | root | Al | 2.38 | MC |
| SRR4947509 | root | Al | 0.83 | MC |
| SRR6502091 | root | 100 mM NaCl | 4.44 | MC |
| SRR6502093 | root | 100 mM NaCl | 5.59 | MC |
| SRR6502094 | root | control | 4.40 | MC |
| SRR6502095 | root | control | 3.65 | MC |
| SRR6502096 | root | control | 2.10 | MC |
| SRR2857719 | seedling | drought_stress_0h | 2.90 | MC |
| SRR2857720 | seedling | drought_stress_1h | 2.37 | MC |
| SRR2857721 | seedling | drought_stress_6h | 2.46 | MC |
| SRR1944582 | seedling | "with_chilling_teatment_(4C,33h)" | 0.58 | MC |
| SRR1944583 | seedling | no_treatment | 4.05 | MC |
| SRR358791 | seedling | wt | 3.32 | MC |
| SRR358792 | seedling | wt | 3.75 | MC |
| SRR358793 | seedling | wt | 1.36 | MC |
| SRR358794 | seedling | wt | 1.68 | MC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 5.70 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 13.02 | MC |
| SRR3950244 | shoot | Drought_during_3_days;Fr13_inoculated | 1.12 | MC |
| SRR3950245 | shoot | Drought_during_3_days;Fr13_inoculated | 1.35 | MC |
| SRR3950246 | shoot | Drought_during_3_days;Fr13_inoculated | 1.90 | MC |
| SRR3950247 | shoot | No_DIS;Fr13_inoculated | 1.49 | MC |
| SRR3950248 | shoot | No_DIS;Fr13_inoculated | 3.05 | MC |
| SRR5052714 | shoot_apical_meristem | 4_days_after_shift | 0.64 | MC |
| SRR5052716 | shoot_apical_meristem | 8_days_after_shift | 0.95 | MC |
| SRR5052721 | shoot_apical_meristem | 12_days_after_shift | 0.65 | MC |
| SRR5052722 | shoot_apical_meristem | 12_days_after_shift | 0.57 | MC |
| SRR5052723 | shoot_apical_meristem | 12_days_after_shift | 0.95 | MC |
| SRR5052724 | shoot_apical_meristem | 0_days_after_shift | 0.65 | MC |
| SRR5052726 | shoot_apical_meristem | 0_days_after_shift | 0.66 | MC |
| SRR5052727 | shoot_apical_meristem | 4_days_after_shift | 0.57 | MC |
| SRR5052728 | shoot_apical_meristem | 4_days_after_shift | 0.58 | MC |
| SRR5052731 | shoot_apical_meristem | 8_days_after_shift | 0.69 | MC |
| SRR5052732 | shoot_apical_meristem | 8_days_after_shift | 0.75 | MC |
| SRR5052734 | shoot_apical_meristem | 12_days_after_shift | 0.73 | MC |
| SRR1617549 | shoot_apical_meristem | no collect | 0.84 | MC |
| SRR1617554 | shoot_apical_meristem | no collect | 1.14 | MC |
| SRR1617556 | shoot_apical_meristem | no collect | 1.11 | MC |
| SRR1617557 | shoot_apical_meristem | no collect | 1.18 | MC |