| SRR4457265 | 2nd_leaf | DAH44 | 3.61 | MC |
| SRR3745125 | anther | wt | 2.32 | MC |
| SRR3745126 | anther | wt | 1.31 | MC |
| SRR3745127 | anther | wt | 1.83 | MC |
| SRR358796 | callus | wt | 7.62 | MC |
| SRR358797 | callus | wt | 5.97 | MC |
| SRR5560727 | caryopsis | wild_type | 3.62 | MC |
| SRR5560728 | caryopsis | wild_type | 3.33 | MC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 1.75 | MC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 0.55 | MC |
| SRR4947495 | root | control | 0.97 | MC |
| SRR7265400 | coleoptile | 2dA | 0.34 | MC |
| SRR7265401 | coleoptile | 2dA | 0.40 | MC |
| SRR7265403 | coleoptile | 2dN | 0.78 | MC |
| SRR7265404 | coleoptile | 2dN | 0.87 | MC |
| SRR7265413 | coleoptile | 4dA | 0.95 | MC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 2.20 | MC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 0.96 | MC |
| SRR4104637 | crown | "Zn_deficiency,8_days_of_treatment" | 2.12 | MC |
| SRR4104638 | crown | "Zn_deficiency,8_days_of_treatment" | 1.86 | MC |
| SRR4104647 | crown | "Zn_Efficient,8_days_of_treatment" | 2.76 | MC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 2.88 | MC |
| SRR4104643 | crown | "Zn_Efficient,8_days_of_treatment" | 3.35 | MC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 1.59 | MC |
| SRR4104646 | crown | "Zn_Efficient,8_days_of_treatment" | 3.28 | MC |
| SRR7265373 | embryo | dry seed 0 h | 0.75 | MC |
| SRR7265374 | embryo | dry seed 0 h | 0.90 | MC |
| SRR7265376 | embryo | 1hA | 0.73 | MC |
| SRR7265379 | embryo | 1hN | 0.27 | MC |
| SRR7265381 | embryo | 1hN | 1.12 | MC |
| SRR7265382 | embryo | 3hA | 0.43 | MC |
| SRR7265384 | embryo | 3hA | 0.34 | MC |
| SRR7265389 | embryo | 12hA | 0.79 | MC |
| SRR7265390 | embryo | 12hA | 0.79 | MC |
| SRR7265391 | embryo | 12hN | 0.84 | MC |
| SRR7265392 | embryo | 12hN | 2.04 | MC |
| SRR7265395 | embryo | 24hA | 0.92 | MC |
| SRR7265396 | embryo | 24hA | 0.64 | MC |
| SRR2338869 | endosprem | high_temperature | 0.93 | MC |
| SRR4457238 | flag_leaf | DAH20 | 3.85 | MC |
| SRR4457239 | flag_leaf | DAH20 | 3.11 | MC |
| SRR4457240 | flag_leaf | DAH28 | 3.43 | MC |
| SRR4457241 | flag_leaf | DAH28 | 3.75 | MC |
| SRR1213691 | flower | wt | 3.32 | MC |
| SRR8060836 | leaf | wild_type | 3.00 | MC |
| SRR8060837 | leaf | wild_type | 2.44 | MC |
| SRR8240820 | leaf | wild_type | 0.54 | MC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 2.80 | MC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 3.82 | MC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 2.77 | MC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 2.63 | MC |
| SRR2922623 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 1.27 | MC |
| SRR2922624 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 2.87 | MC |
| SRR1952778 | leaf | 48_hrs_after_inoculation_with_BLS256 | 3.90 | MC |
| SRR1952780 | leaf | 48_hrs_after_inoculation_with_BLS256 | 4.59 | MC |
| SRR1952782 | leaf | 48_hrs_after_inoculation_with_BLS279 | 5.64 | MC |
| SRR1952783 | leaf | 48_hrs_after_inoculation_with_BLS279 | 3.86 | MC |
| SRR1952785 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 2.89 | MC |
| SRR1952786 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 2.30 | MC |
| SRR1952787 | leaf | 48_hrs_after_inoculation_with_B8_12 | 3.91 | MC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 2.47 | MC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 3.35 | MC |
| SRR1952790 | leaf | 48_hrs_after_inoculation_with_L8 | 4.87 | MC |
| SRR1952791 | leaf | 48_hrs_after_inoculation_with_L8 | 1.34 | MC |
| SRR1952792 | leaf | 48_hrs_after_inoculation_with_L8 | 2.99 | MC |
| SRR1952794 | leaf | 48_hrs_after_inoculation_with_RS105 | 2.00 | MC |
| SRR1952795 | leaf | 48_hrs_after_inoculation_with_RS105 | 1.96 | MC |
| SRR1952797 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 2.15 | MC |
| SRR1952798 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 5.50 | MC |
| SRR1952800 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 5.13 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 2.81 | MC |
| SRR1952803 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 4.13 | MC |
| SRR1952804 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 3.95 | MC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 2.41 | MC |
| SRR1952807 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 3.23 | MC |
| SRR1952809 | leaf | 48_hrs_after_mock_inoculation | 2.62 | MC |
| SRR1761789 | leaf | "wild_type,drought,2" | 2.48 | MC |
| SRR1761791 | leaf | "wild_type,control,2" | 4.93 | MC |
| SRR1761781 | leaf | "wild_type,drought,1" | 2.48 | MC |
| SRR1761783 | leaf | "wild_type,control,1" | 4.94 | MC |
| SRR1761529 | leaf | drought | 2.47 | MC |
| SRR1761531 | leaf | control | 4.92 | MC |
| SRR6417964 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 0.54 | MC |
| SRR6417967 | leaf | H2O_control | 0.95 | MC |
| SRR6417968 | leaf | H2O_control | 1.38 | MC |
| SRR6417969 | leaf | H2O_control | 2.44 | MC |
| SRR3209769 | leaf | Watered;Long_Day | 2.84 | MC |
| SRR3209771 | leaf | Drought;Long_Day | 4.13 | MC |
| SRR3209772 | leaf | Drought;Long_Day | 3.60 | MC |
| SRR3209773 | leaf | Watered;Short_Day | 2.97 | MC |
| SRR3209776 | leaf | Drought;Short_Day | 2.56 | MC |
| SRR3209777 | leaf | Watered;Long_Day | 2.32 | MC |
| SRR3209778 | leaf | Drought;Long_Day | 3.37 | MC |
| SRR3209779 | leaf | Watered;Short_Day | 2.82 | MC |
| SRR3209780 | leaf | Drought;Short_Day | 2.33 | MC |
| SRR8611900 | leaf | Non-inoculated | 3.31 | MC |
| SRR8611901 | leaf | Non-inoculated | 3.48 | MC |
| SRR8611902 | leaf | Non-inoculated | 3.06 | MC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 0.61 | MC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 0.58 | MC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 1.60 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 3.71 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 2.62 | MC |
| SRR1213693 | leaf | wt | 3.55 | MC |
| SRR6502099 | leaf | 100 mM NaCl | 2.52 | MC |
| SRR5856927 | leaf | control | 0.67 | MC |
| SRR5856929 | leaf | control | 0.73 | MC |
| SRR5856930 | leaf | salt | 1.37 | MC |
| SRR5856932 | leaf | salt | 0.23 | MC |
| SRR5856933 | leaf | control | 1.14 | MC |
| SRR5856934 | leaf | control | 1.22 | MC |
| SRR5856935 | leaf | control | 1.68 | MC |
| SRR5856936 | leaf | salt | 0.63 | MC |
| SRR5856937 | leaf | salt | 0.80 | MC |
| SRR5856938 | leaf | salt | 0.90 | MC |
| SRR6053393 | leaf | ethanol solvent (untreated control) | 2.70 | MC |
| SRR6053394 | leaf | ethanol solvent (untreated control) | 2.68 | MC |
| SRR6053398 | leaf | Paclobutrazol (PB) | 3.86 | MC |
| SRR6053399 | leaf | Paclobutrazol (PB) | 3.04 | MC |
| SRR6168975 | leaf | none (control) | 4.68 | MC |
| SRR6168976 | leaf | 0.5% Na2CO3 solution for 36h | 2.52 | MC |
| SRR6168977 | leaf | 0.5% Na2CO3 solution for 36h | 1.01 | MC |
| SRR6168980 | leaf | none (control) | 0.48 | MC |
| SRR6168981 | leaf | none (control) | 1.71 | MC |
| SRR6168982 | leaf | 0.5% Na2CO3 solution for 36h | 1.14 | MC |
| SRR6168983 | leaf | 0.5% Na2CO3 solution for 36h | 1.77 | MC |
| SRR6168984 | leaf | 0.5% Na2CO3 solution for 36h | 1.92 | MC |
| SRR8582889 | panicle | AM | 0.74 | MC |
| SRR8582890 | panicle | AM | 1.93 | MC |
| SRR5110433 | panicle | Dawn + 3.5h | 2.43 | MC |
| SRR5110435 | panicle | Dawn + 3.5h | 3.08 | MC |
| SRR5110440 | panicle | Dawn + 7h | 4.80 | MC |
| SRR5110441 | panicle | Dawn + 10.5h | 4.46 | MC |
| SRR5110449 | panicle | Dawn + 14h | 5.84 | MC |
| SRR1213696 | endosprem | wt(milk grains) | 1.87 | MC |
| SRR1633182 | panicle | WT | 2.21 | MC |
| SRR1633185 | panicle | WT | 2.52 | MC |
| SRR5278374 | pistil | "Balilla,S1" | 3.02 | MC |
| SRR5126147 | root | "mock,1_day" | 1.67 | MC |
| SRR5126148 | root | "mock,1_day" | 1.85 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 0.84 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 0.98 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 1.41 | MC |
| SRR5126153 | root | "mock,7_days" | 2.14 | MC |
| SRR5126155 | root | "mock,7_days" | 0.96 | MC |
| SRR5126157 | root | "mock,7_days" | 1.83 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 1.26 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 2.16 | MC |
| SRR5126165 | root | "mock,14_days" | 3.32 | MC |
| SRR5126167 | root | "mock,14_days" | 1.67 | MC |
| SRR5126169 | root | "mock,14_days" | 2.01 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 1.38 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 2.14 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 0.57 | MC |
| SRR3472900 | root | nontransgenic_rice_plant | 1.11 | MC |
| SRR1213694 | root | wt | 1.87 | MC |
| SRR4947478 | root | control | 0.91 | MC |
| SRR4947479 | root | control | 1.13 | MC |
| SRR4947480 | root | control | 2.30 | MC |
| SRR4947481 | root | control | 2.64 | MC |
| SRR4947482 | root | Al | 0.85 | MC |
| SRR4947484 | root | Al | 0.56 | MC |
| SRR4947485 | root | Al | 2.24 | MC |
| SRR4947487 | root | control | 2.90 | MC |
| SRR4947488 | root | control | 1.56 | MC |
| SRR4947489 | root | control | 0.91 | MC |
| SRR4947493 | root | Al | 0.51 | MC |
| SRR4947498 | root | Al | 1.71 | MC |
| SRR4947499 | root | Al | 2.99 | MC |
| SRR4947500 | root | Al | 1.47 | MC |
| SRR4947501 | root | Al | 1.56 | MC |
| SRR4947502 | root | control | 2.98 | MC |
| SRR4947503 | root | control | 1.38 | MC |
| SRR4947504 | root | control | 1.14 | MC |
| SRR4947505 | root | control | 0.52 | MC |
| SRR4947506 | root | Al | 3.20 | MC |
| SRR4947507 | root | Al | 1.98 | MC |
| SRR4947508 | root | Al | 3.02 | MC |
| SRR6502094 | root | control | 5.06 | MC |
| SRR6502103 | root | 100 mM NaCl | 3.38 | MC |
| SRR6502106 | root | control | 3.66 | MC |
| SRR6502107 | root | control | 3.39 | MC |
| SRR6502108 | root | control | 4.18 | MC |
| SRR1740436 | root_differentiation_zone | wt | 1.59 | MC |
| SRR1740431 | root_elongation_zone | wt | 0.75 | MC |
| SRR1740432 | root_elongation_zone | wt | 0.75 | MC |
| SRR1740433 | root_elongation_zone | wt | 0.91 | MC |
| SRR1740428 | root_meristematic_zone | wt | 0.61 | MC |
| SRR1740429 | root_meristematic_zone | wt | 1.55 | MC |
| SRR1740430 | root_meristematic_zone | wt | 1.68 | MC |
| SRR6441554 | seedling | wild_type | 2.92 | MC |
| SRR6441555 | seedling | wild_type | 2.16 | MC |
| SRR2154086 | seedling | wt | 4.04 | MC |
| SRR2154082 | seedling | wt | 3.28 | MC |
| SRR2154083 | seedling | wt | 2.48 | MC |
| SRR2154085 | seedling | wt | 3.86 | MC |
| SRR2154087 | seedling | wt | 2.86 | MC |
| SRR3098741 | seedling | wt | 2.12 | MC |
| SRR3098742 | seedling | wt | 2.32 | MC |
| SRR3098743 | seedling | wt | 2.03 | MC |
| SRR2857721 | seedling | drought_stress_6h | 1.34 | MC |
| SRR1944583 | seedling | no_treatment | 4.47 | MC |
| SRR358791 | seedling | wt | 4.75 | MC |
| SRR358792 | seedling | wt | 5.25 | MC |
| SRR3950244 | shoot | Drought_during_3_days;Fr13_inoculated | 0.62 | MC |
| SRR3950245 | shoot | Drought_during_3_days;Fr13_inoculated | 1.04 | MC |
| SRR3950246 | shoot | Drought_during_3_days;Fr13_inoculated | 1.42 | MC |
| SRR3950247 | shoot | No_DIS;Fr13_inoculated | 1.28 | MC |
| SRR3950248 | shoot | No_DIS;Fr13_inoculated | 0.82 | MC |
| SRR3950249 | shoot | No_DIS;Fr13_inoculated | 1.00 | MC |
| SRR3950250 | shoot | Drought_during_3_days;_mock_inoculated | 1.15 | MC |
| SRR3950251 | shoot | Drought_during_3_days;_mock_inoculated | 1.64 | MC |
| SRR3950252 | shoot | Drought_during_3_days;_mock_inoculated | 1.36 | MC |
| SRR3950253 | shoot | No_DIS;_mock_inoculated | 0.67 | MC |
| SRR3950255 | shoot | No_DIS;_mock_inoculated | 1.83 | MC |
| SRR5796941 | shoot | "Control,22C for 10 min" | 2.06 | MC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 1.87 | MC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 2.83 | MC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 1.22 | MC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 2.21 | MC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 1.43 | MC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 1.06 | MC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 3.03 | MC |
| SRR5796959 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 2.97 | MC |
| SRR5052708 | shoot_apical_meristem | 0_days_after_shift | 4.47 | MC |
| SRR5052709 | shoot_apical_meristem | 0_days_after_shift | 3.99 | MC |
| SRR5052710 | shoot_apical_meristem | 0_days_after_shift | 6.29 | MC |
| SRR5052711 | shoot_apical_meristem | 4_days_after_shift | 5.70 | MC |
| SRR5052713 | shoot_apical_meristem | 4_days_after_shift | 5.62 | MC |
| SRR5052714 | shoot_apical_meristem | 4_days_after_shift | 3.71 | MC |
| SRR5052716 | shoot_apical_meristem | 8_days_after_shift | 6.03 | MC |
| SRR5052719 | shoot_apical_meristem | 8_days_after_shift | 4.48 | MC |
| SRR5052720 | shoot_apical_meristem | 8_days_after_shift | 4.25 | MC |
| SRR5052721 | shoot_apical_meristem | 12_days_after_shift | 3.45 | MC |
| SRR5052722 | shoot_apical_meristem | 12_days_after_shift | 4.85 | MC |
| SRR5052723 | shoot_apical_meristem | 12_days_after_shift | 3.82 | MC |
| SRR5052725 | shoot_apical_meristem | 0_days_after_shift | 5.51 | MC |
| SRR5052726 | shoot_apical_meristem | 0_days_after_shift | 3.63 | MC |
| SRR5052727 | shoot_apical_meristem | 4_days_after_shift | 4.93 | MC |
| SRR5052728 | shoot_apical_meristem | 4_days_after_shift | 5.39 | MC |
| SRR5052730 | shoot_apical_meristem | 4_days_after_shift | 3.78 | MC |
| SRR5052731 | shoot_apical_meristem | 8_days_after_shift | 5.51 | MC |
| SRR5052732 | shoot_apical_meristem | 8_days_after_shift | 3.70 | MC |
| SRR5052733 | shoot_apical_meristem | 8_days_after_shift | 6.00 | MC |
| SRR5052734 | shoot_apical_meristem | 12_days_after_shift | 5.81 | MC |
| SRR5052735 | shoot_apical_meristem | 12_days_after_shift | 4.28 | MC |
| SRR1617553 | shoot_apical_meristem | no collect | 6.02 | MC |
| SRR1617557 | shoot_apical_meristem | no collect | 4.23 | MC |
| SRR1617558 | shoot_apical_meristem | no collect | 2.86 | MC |
| SRR1617559 | shoot_apical_meristem | no collect | 4.88 | MC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 3.02 | MC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 2.51 | MC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 3.99 | MC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 2.51 | MC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 1.91 | MC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 2.96 | MC |
| SRR7760291 | spikelet | control condition (29C) for 7 hrs | 3.30 | MC |
| SRR7760292 | spikelet | control condition (29C) for 7 hrs | 2.24 | MC |
| SRR7760295 | spikelet | high temperature treatment (38C) for 7 hrs | 1.23 | MC |
| SRR7760296 | spikelet | high temperature treatment (38C) for 7 hrs | 2.63 | MC |
| SRR7760297 | spikelet | control condition (29C) for 7 hrs | 1.92 | MC |
| SRR7760298 | spikelet | control condition (29C) for 7 hrs | 1.76 | MC |
| SRR7760299 | spikelet | control condition (29C) for 7 hrs | 1.72 | MC |
| SRR7760300 | spikelet | high temperature treatment (38C) for 7 hrs | 1.89 | MC |
| SRR7760301 | spikelet | high temperature treatment (38C) for 7 hrs | 1.94 | MC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 1.74 | MC |