| SRR4457250 | 2nd_leaf | DAH4 | 1.63 | MC |
| SRR4457252 | 2nd_leaf | DAH12 | 0.33 | MC |
| SRR4457256 | 2nd_leaf | DAH20 | 1.66 | MC |
| SRR4457259 | 2nd_leaf | DAH28 | 1.01 | MC |
| SRR4457260 | 2nd_leaf | DAH28 | 0.87 | MC |
| SRR4457261 | 2nd_leaf | DAH36 | 1.26 | MC |
| SRR4457264 | 2nd_leaf | DAH44 | 1.78 | MC |
| SRR4457266 | 2nd_leaf | DAH44 | 1.94 | MC |
| SRR3745126 | anther | wt | 1.48 | MC |
| SRR5560728 | caryopsis | wild_type | 0.59 | MC |
| SRR7265400 | coleoptile | 2dA | 0.65 | MC |
| SRR7265401 | coleoptile | 2dA | 0.83 | MC |
| SRR7265402 | coleoptile | 2dA | 0.81 | MC |
| SRR7265403 | coleoptile | 2dN | 1.68 | MC |
| SRR7265404 | coleoptile | 2dN | 0.36 | MC |
| SRR7265405 | coleoptile | 2dN | 2.17 | MC |
| SRR7265407 | coleoptile | 3dA | 2.05 | MC |
| SRR7265408 | coleoptile | 3dA | 0.44 | MC |
| SRR7265409 | coleoptile | 3dN | 0.90 | MC |
| SRR7265410 | coleoptile | 3dN | 0.79 | MC |
| SRR7265411 | coleoptile | 3dN | 0.89 | MC |
| SRR7265412 | coleoptile | 4dA | 1.12 | MC |
| SRR7265414 | coleoptile | 4dA | 0.97 | MC |
| SRR7265416 | coleoptile | 4dN | 0.93 | MC |
| SRR7265417 | coleoptile | 4dN | 0.54 | MC |
| SRR7265419 | coleoptile | 3dN1dA | 0.77 | MC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 0.60 | MC |
| SRR4104637 | crown | "Zn_deficiency,8_days_of_treatment" | 1.57 | MC |
| SRR4104638 | crown | "Zn_deficiency,8_days_of_treatment" | 3.40 | MC |
| SRR4104647 | crown | "Zn_Efficient,8_days_of_treatment" | 0.61 | MC |
| SRR4104640 | crown | "Zn_deficiency,8_days_of_treatment" | 2.27 | MC |
| SRR4104641 | crown | "Zn_deficiency,8_days_of_treatment" | 2.10 | MC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 0.63 | MC |
| SRR4104643 | crown | "Zn_Efficient,8_days_of_treatment" | 2.78 | MC |
| SRR4104644 | crown | "Zn_Efficient,8_days_of_treatment" | 1.55 | MC |
| SRR4104646 | crown | "Zn_Efficient,8_days_of_treatment" | 0.57 | MC |
| SRR7265374 | embryo | dry seed 0 h | 2.19 | MC |
| SRR7265375 | embryo | dry seed 0 h | 1.27 | MC |
| SRR7265376 | embryo | 1hA | 0.91 | MC |
| SRR7265378 | embryo | 1hA | 1.84 | MC |
| SRR7265379 | embryo | 1hN | 1.95 | MC |
| SRR7265380 | embryo | 1hN | 2.08 | MC |
| SRR7265381 | embryo | 1hN | 1.46 | MC |
| SRR7265382 | embryo | 3hA | 0.74 | MC |
| SRR7265384 | embryo | 3hA | 2.19 | MC |
| SRR7265385 | embryo | 3hN | 2.81 | MC |
| SRR7265386 | embryo | 3hN | 1.36 | MC |
| SRR7265387 | embryo | 3hN | 0.54 | MC |
| SRR7265388 | embryo | 12hA | 1.08 | MC |
| SRR7265389 | embryo | 12hA | 0.83 | MC |
| SRR7265391 | embryo | 12hN | 1.48 | MC |
| SRR7265392 | embryo | 12hN | 1.92 | MC |
| SRR7265393 | embryo | 12hN | 1.58 | MC |
| SRR7265395 | embryo | 24hA | 1.98 | MC |
| SRR7265396 | embryo | 24hA | 0.88 | MC |
| SRR7265397 | embryo | 24hN | 1.05 | MC |
| SRR7265398 | embryo | 24hN | 2.01 | MC |
| SRR7265399 | embryo | 24hN | 2.76 | MC |
| SRR2338868 | endosprem | high_temperature | 1.99 | MC |
| SRR4457232 | flag_leaf | DAH4 | 0.83 | MC |
| SRR4457235 | flag_leaf | DAH12 | 1.88 | MC |
| SRR4457237 | flag_leaf | DAH20 | 1.69 | MC |
| SRR4457238 | flag_leaf | DAH20 | 0.51 | MC |
| SRR4457242 | flag_leaf | DAH28 | 1.97 | MC |
| SRR4457245 | flag_leaf | DAH36 | 1.57 | MC |
| SRR8060835 | leaf | wild_type | 0.23 | MC |
| SRR8240824 | leaf | wild_type | 2.24 | MC |
| SRR8240826 | leaf | wild_type | 1.42 | MC |
| SRR8240818 | leaf | wild_type | 1.22 | MC |
| SRR8240819 | leaf | wild_type | 1.93 | MC |
| SRR8240820 | leaf | wild_type | 1.32 | MC |
| SRR2922624 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 4.52 | MC |
| SRR1952778 | leaf | 48_hrs_after_inoculation_with_BLS256 | 3.95 | MC |
| SRR1952780 | leaf | 48_hrs_after_inoculation_with_BLS256 | 2.16 | MC |
| SRR1952787 | leaf | 48_hrs_after_inoculation_with_B8_12 | 3.53 | MC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 1.09 | MC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.35 | MC |
| SRR1952791 | leaf | 48_hrs_after_inoculation_with_L8 | 3.21 | MC |
| SRR1952792 | leaf | 48_hrs_after_inoculation_with_L8 | 0.44 | MC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.96 | MC |
| SRR1952795 | leaf | 48_hrs_after_inoculation_with_RS105 | 3.23 | MC |
| SRR1952797 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 3.40 | MC |
| SRR1952799 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 3.92 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 1.34 | MC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 0.32 | MC |
| SRR1952804 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 3.39 | MC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 2.10 | MC |
| SRR1952807 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 3.29 | MC |
| SRR1761788 | leaf | "wild_type,drought,2" | 2.03 | MC |
| SRR1761789 | leaf | "wild_type,drought,2" | 4.02 | MC |
| SRR1761791 | leaf | "wild_type,control,2" | 4.98 | MC |
| SRR1761780 | leaf | "wild_type,drought,1" | 2.03 | MC |
| SRR1761781 | leaf | "wild_type,drought,1" | 4.02 | MC |
| SRR1761783 | leaf | "wild_type,control,1" | 4.98 | MC |
| SRR1761528 | leaf | drought | 2.03 | MC |
| SRR1761529 | leaf | drought | 4.02 | MC |
| SRR1761531 | leaf | control | 4.98 | MC |
| SRR504365 | leaf | wt | 1.22 | MC |
| SRR6417968 | leaf | H2O_control | 1.52 | MC |
| SRR3209771 | leaf | Drought;Long_Day | 4.03 | MC |
| SRR3209772 | leaf | Drought;Long_Day | 4.32 | MC |
| SRR3209775 | leaf | Drought;Short_Day | 2.34 | MC |
| SRR8611900 | leaf | Non-inoculated | 2.05 | MC |
| SRR8611901 | leaf | Non-inoculated | 1.38 | MC |
| SRR8611902 | leaf | Non-inoculated | 0.49 | MC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 1.95 | MC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 1.26 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 2.10 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 2.83 | MC |
| SRR1213692 | leaf | wt | 1.33 | MC |
| SRR1213693 | leaf | wt | 0.67 | MC |
| SRR6502087 | leaf | 100 mM NaCl | 1.78 | MC |
| SRR5856928 | leaf | control | 1.01 | MC |
| SRR5856931 | leaf | salt | 0.19 | MC |
| SRR5856933 | leaf | control | 0.21 | MC |
| SRR5856934 | leaf | control | 0.96 | MC |
| SRR5856937 | leaf | salt | 0.95 | MC |
| SRR5856938 | leaf | salt | 1.58 | MC |
| SRR6053392 | leaf | ethanol solvent (untreated control) | 5.12 | MC |
| SRR6053397 | leaf | gibberellic acid (GA) | 7.47 | MC |
| SRR6053399 | leaf | Paclobutrazol (PB) | 5.52 | MC |
| SRR6168973 | leaf | none (control) | 0.81 | MC |
| SRR6168974 | leaf | none (control) | 0.36 | MC |
| SRR6168975 | leaf | none (control) | 1.34 | MC |
| SRR6168976 | leaf | 0.5% Na2CO3 solution for 36h | 1.41 | MC |
| SRR6168977 | leaf | 0.5% Na2CO3 solution for 36h | 2.07 | MC |
| SRR6168978 | leaf | 0.5% Na2CO3 solution for 36h | 1.29 | MC |
| SRR6168980 | leaf | none (control) | 0.21 | MC |
| SRR6168981 | leaf | none (control) | 1.10 | MC |
| SRR6168982 | leaf | 0.5% Na2CO3 solution for 36h | 0.90 | MC |
| SRR6168983 | leaf | 0.5% Na2CO3 solution for 36h | 0.20 | MC |
| SRR6168984 | leaf | 0.5% Na2CO3 solution for 36h | 0.36 | MC |
| SRR5110429 | panicle | Dawn | 1.18 | MC |
| SRR5110431 | panicle | Dawn | 0.80 | MC |
| SRR5110432 | panicle | Dawn | 0.81 | MC |
| SRR4947496 | root | control | 0.65 | MC |
| SRR5110435 | panicle | Dawn + 3.5h | 1.07 | MC |
| SRR5110437 | panicle | Dawn + 7h | 1.06 | MC |
| SRR5110440 | panicle | Dawn + 7h | 0.79 | MC |
| SRR5110441 | panicle | Dawn + 10.5h | 3.06 | MC |
| SRR5110442 | panicle | Dawn + 10.5h | 0.49 | MC |
| SRR5110443 | panicle | Dawn + 10.5h | 2.31 | MC |
| SRR5110444 | panicle | Dawn + 10.5h | 1.71 | MC |
| SRR5110445 | panicle | Dusk | 0.45 | MC |
| SRR5110447 | panicle | Dusk | 1.26 | MC |
| SRR5110448 | panicle | Dusk | 2.88 | MC |
| SRR5110451 | panicle | Dawn + 14h | 1.68 | MC |
| SRR5110454 | panicle | Dawn + 17.5h | 1.56 | MC |
| SRR5110455 | panicle | Dawn + 17.5h | 4.23 | MC |
| SRR5110456 | panicle | Dawn + 17.5h | 0.75 | MC |
| SRR5110457 | panicle | Dawn + 21h | 0.66 | MC |
| SRR1213697 | endosprem | wt(mature seeds) | 0.25 | MC |
| SRR1633185 | panicle | WT | 0.50 | MC |
| SRR5278376 | pistil | "Balilla,S2" | 1.25 | MC |
| SRR5278378 | pistil | "Balilla,S3" | 1.11 | MC |
| SRR5126147 | root | "mock,1_day" | 3.46 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 1.14 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 0.87 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 3.39 | MC |
| SRR5126165 | root | "mock,14_days" | 1.78 | MC |
| SRR5126167 | root | "mock,14_days" | 0.44 | MC |
| SRR5126169 | root | "mock,14_days" | 2.99 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 2.39 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 0.63 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 0.52 | MC |
| SRR3472900 | root | nontransgenic_rice_plant | 0.42 | MC |
| SRR1213695 | root | wt | 0.85 | MC |
| SRR4947478 | root | control | 0.86 | MC |
| SRR4947481 | root | control | 2.56 | MC |
| SRR4947482 | root | Al | 1.11 | MC |
| SRR4947483 | root | Al | 1.43 | MC |
| SRR4947484 | root | Al | 3.23 | MC |
| SRR4947488 | root | control | 0.53 | MC |
| SRR4947491 | root | Al | 2.05 | MC |
| SRR4947493 | root | Al | 0.77 | MC |
| SRR4947501 | root | Al | 1.04 | MC |
| SRR4947502 | root | control | 1.17 | MC |
| SRR4947503 | root | control | 1.73 | MC |
| SRR4947504 | root | control | 0.86 | MC |
| SRR4947506 | root | Al | 2.19 | MC |
| SRR4947508 | root | Al | 0.95 | MC |
| SRR1740434 | root_differentiation_zone | wt | 3.05 | MC |
| SRR1740436 | root_differentiation_zone | wt | 1.02 | MC |
| SRR1740431 | root_elongation_zone | wt | 3.82 | MC |
| SRR1740433 | root_elongation_zone | wt | 2.14 | MC |
| SRR1740430 | root_meristematic_zone | wt | 3.27 | MC |
| SRR6441555 | seedling | wild_type | 1.09 | MC |
| SRR2154087 | seedling | wt | 0.37 | MC |
| SRR3098741 | seedling | wt | 1.31 | MC |
| SRR3098742 | seedling | wt | 1.47 | MC |
| SRR2857721 | seedling | drought_stress_6h | 0.45 | MC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 2.92 | MC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 4.58 | MC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 6.30 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 7.34 | MC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 7.76 | MC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 6.58 | MC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 3.93 | MC |
| SRR5796941 | shoot | "Control,22C for 10 min" | 2.36 | MC |
| SRR5796943 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 1.90 | MC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 0.45 | MC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 1.53 | MC |
| SRR5052719 | shoot_apical_meristem | 8_days_after_shift | 2.82 | MC |
| SRR5052721 | shoot_apical_meristem | 12_days_after_shift | 4.18 | MC |
| SRR5052727 | shoot_apical_meristem | 4_days_after_shift | 1.82 | MC |
| SRR5052730 | shoot_apical_meristem | 4_days_after_shift | 5.40 | MC |
| SRR5052734 | shoot_apical_meristem | 12_days_after_shift | 5.69 | MC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 1.68 | MC |
| SRR7760292 | spikelet | control condition (29C) for 7 hrs | 1.96 | MC |
| SRR7760293 | spikelet | control condition (29C) for 7 hrs | 2.31 | MC |
| SRR7760294 | spikelet | high temperature treatment (38C) for 7 hrs | 0.65 | MC |
| SRR7760298 | spikelet | control condition (29C) for 7 hrs | 0.47 | MC |
| SRR7760300 | spikelet | high temperature treatment (38C) for 7 hrs | 0.21 | MC |
| SRR7760301 | spikelet | high temperature treatment (38C) for 7 hrs | 0.38 | MC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 0.84 | MC |