| SRR4457249 | 2nd_leaf | DAH4 | 0.65 | MC |
| SRR4457250 | 2nd_leaf | DAH4 | 0.59 | MC |
| SRR4457251 | 2nd_leaf | DAH4 | 0.29 | MC |
| SRR4457252 | 2nd_leaf | DAH12 | 0.54 | MC |
| SRR4457253 | 2nd_leaf | DAH12 | 0.57 | MC |
| SRR4457255 | 2nd_leaf | DAH20 | 0.94 | MC |
| SRR4457256 | 2nd_leaf | DAH20 | 0.67 | MC |
| SRR4457258 | 2nd_leaf | DAH28 | 0.30 | MC |
| SRR4457260 | 2nd_leaf | DAH28 | 0.56 | MC |
| SRR4457261 | 2nd_leaf | DAH36 | 0.66 | MC |
| SRR4457262 | 2nd_leaf | DAH36 | 0.67 | MC |
| SRR4457263 | 2nd_leaf | DAH36 | 0.97 | MC |
| SRR4457264 | 2nd_leaf | DAH44 | 1.39 | MC |
| SRR4457265 | 2nd_leaf | DAH44 | 0.54 | MC |
| SRR3745125 | anther | wt | 1.44 | MC |
| SRR3745126 | anther | wt | 1.63 | MC |
| SRR3745127 | anther | wt | 0.98 | MC |
| SRR6320473 | carpel | wt | 3.02 | MC |
| SRR6320498 | carpel | wt | 4.03 | MC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 1.87 | MC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 2.47 | MC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 1.01 | MC |
| SRR4947495 | root | control | 1.20 | MC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 0.76 | MC |
| SRR7265400 | coleoptile | 2dA | 0.28 | MC |
| SRR7265406 | coleoptile | 3dA | 0.60 | MC |
| SRR7265418 | coleoptile | 3dN1dA | 0.66 | MC |
| SRR4104638 | crown | "Zn_deficiency,8_days_of_treatment" | 2.08 | MC |
| SRR4104647 | crown | "Zn_Efficient,8_days_of_treatment" | 0.90 | MC |
| SRR4104640 | crown | "Zn_deficiency,8_days_of_treatment" | 2.00 | MC |
| SRR4104641 | crown | "Zn_deficiency,8_days_of_treatment" | 1.28 | MC |
| SRR4104643 | crown | "Zn_Efficient,8_days_of_treatment" | 2.98 | MC |
| SRR4104644 | crown | "Zn_Efficient,8_days_of_treatment" | 3.01 | MC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 3.48 | MC |
| SRR4104646 | crown | "Zn_Efficient,8_days_of_treatment" | 2.40 | MC |
| SRR7265373 | embryo | dry seed 0 h | 0.42 | MC |
| SRR7265376 | embryo | 1hA | 0.39 | MC |
| SRR7265381 | embryo | 1hN | 0.26 | MC |
| SRR7265384 | embryo | 3hA | 0.31 | MC |
| SRR7265386 | embryo | 3hN | 0.29 | MC |
| SRR7265389 | embryo | 12hA | 0.75 | MC |
| SRR7265390 | embryo | 12hA | 0.50 | MC |
| SRR7265391 | embryo | 12hN | 0.66 | MC |
| SRR7265393 | embryo | 12hN | 0.83 | MC |
| SRR7265398 | embryo | 24hN | 0.46 | MC |
| SRR4457231 | flag_leaf | DAH4 | 0.37 | MC |
| SRR4457243 | flag_leaf | DAH36 | 0.55 | MC |
| SRR4457244 | flag_leaf | DAH36 | 0.34 | MC |
| SRR4457245 | flag_leaf | DAH36 | 0.42 | MC |
| SRR4457246 | flag_leaf | DAH44 | 0.82 | MC |
| SRR1213691 | flower | wt | 0.32 | MC |
| SRR8060835 | leaf | wild_type | 2.45 | MC |
| SRR8060836 | leaf | wild_type | 2.08 | MC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 0.40 | MC |
| SRR1952778 | leaf | 48_hrs_after_inoculation_with_BLS256 | 0.47 | MC |
| SRR1952780 | leaf | 48_hrs_after_inoculation_with_BLS256 | 0.89 | MC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 0.44 | MC |
| SRR1952782 | leaf | 48_hrs_after_inoculation_with_BLS279 | 1.17 | MC |
| SRR1952783 | leaf | 48_hrs_after_inoculation_with_BLS279 | 0.43 | MC |
| SRR1952784 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 1.41 | MC |
| SRR1952790 | leaf | 48_hrs_after_inoculation_with_L8 | 0.78 | MC |
| SRR1952792 | leaf | 48_hrs_after_inoculation_with_L8 | 0.40 | MC |
| SRR1952794 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.52 | MC |
| SRR1952795 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.41 | MC |
| SRR1952796 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 1.27 | MC |
| SRR1952797 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 0.53 | MC |
| SRR1952799 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 0.86 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 0.50 | MC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 0.66 | MC |
| SRR1952804 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 0.56 | MC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.55 | MC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.67 | MC |
| SRR1952808 | leaf | 48_hrs_after_mock_inoculation | 0.37 | MC |
| SRR1952810 | leaf | 48_hrs_after_mock_inoculation | 0.86 | MC |
| SRR1761788 | leaf | "wild_type,drought,2" | 1.02 | MC |
| SRR1761789 | leaf | "wild_type,drought,2" | 1.16 | MC |
| SRR1761790 | leaf | "wild_type,control,2" | 1.05 | MC |
| SRR1761791 | leaf | "wild_type,control,2" | 0.82 | MC |
| SRR1761780 | leaf | "wild_type,drought,1" | 1.02 | MC |
| SRR1761781 | leaf | "wild_type,drought,1" | 1.16 | MC |
| SRR1761782 | leaf | "wild_type,control,1" | 1.05 | MC |
| SRR1761783 | leaf | "wild_type,control,1" | 0.82 | MC |
| SRR1761528 | leaf | drought | 1.02 | MC |
| SRR1761529 | leaf | drought | 1.16 | MC |
| SRR1761530 | leaf | control | 1.05 | MC |
| SRR1761531 | leaf | control | 0.82 | MC |
| SRR3209769 | leaf | Watered;Long_Day | 0.69 | MC |
| SRR3209770 | leaf | Watered;Long_Day | 0.69 | MC |
| SRR3209777 | leaf | Watered;Long_Day | 0.28 | MC |
| SRR3209780 | leaf | Drought;Short_Day | 0.81 | MC |
| SRR8611900 | leaf | Non-inoculated | 0.29 | MC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 0.22 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 0.20 | MC |
| SRR1213693 | leaf | wt | 0.42 | MC |
| SRR6502085 | leaf | 100 mM NaCl | 3.54 | MC |
| SRR6502097 | leaf | 100 mM NaCl | 0.41 | MC |
| SRR6502098 | leaf | 100 mM NaCl | 1.11 | MC |
| SRR6502100 | leaf | control | 0.35 | MC |
| SRR6502102 | leaf | control | 0.37 | MC |
| SRR5856927 | leaf | control | 0.47 | MC |
| SRR5856928 | leaf | control | 0.69 | MC |
| SRR5856929 | leaf | control | 1.35 | MC |
| SRR5856930 | leaf | salt | 0.35 | MC |
| SRR5856931 | leaf | salt | 0.45 | MC |
| SRR5856932 | leaf | salt | 0.66 | MC |
| SRR5856933 | leaf | control | 0.95 | MC |
| SRR5856934 | leaf | control | 0.76 | MC |
| SRR5856935 | leaf | control | 1.49 | MC |
| SRR5856936 | leaf | salt | 1.53 | MC |
| SRR5856937 | leaf | salt | 1.09 | MC |
| SRR6053392 | leaf | ethanol solvent (untreated control) | 5.94 | MC |
| SRR6053394 | leaf | ethanol solvent (untreated control) | 5.38 | MC |
| SRR6053395 | leaf | gibberellic acid (GA) | 9.45 | MC |
| SRR6053396 | leaf | gibberellic acid (GA) | 1.60 | MC |
| SRR6053399 | leaf | Paclobutrazol (PB) | 4.70 | MC |
| SRR6168976 | leaf | 0.5% Na2CO3 solution for 36h | 1.10 | MC |
| SRR6168978 | leaf | 0.5% Na2CO3 solution for 36h | 5.73 | MC |
| SRR6168983 | leaf | 0.5% Na2CO3 solution for 36h | 0.66 | MC |
| SRR6168984 | leaf | 0.5% Na2CO3 solution for 36h | 1.48 | MC |
| SRR8582891 | panicle | PM | 1.09 | MC |
| SRR8582892 | panicle | PM | 1.11 | MC |
| SRR5110431 | panicle | Dawn | 0.92 | MC |
| SRR4947496 | root | control | 3.09 | MC |
| SRR5110436 | panicle | Dawn + 3.5h | 3.88 | MC |
| SRR5110440 | panicle | Dawn + 7h | 4.79 | MC |
| SRR5110441 | panicle | Dawn + 10.5h | 3.81 | MC |
| SRR5110442 | panicle | Dawn + 10.5h | 4.27 | MC |
| SRR5110443 | panicle | Dawn + 10.5h | 3.07 | MC |
| SRR5110445 | panicle | Dusk | 0.62 | MC |
| SRR5110446 | panicle | Dusk | 0.64 | MC |
| SRR5110447 | panicle | Dusk | 0.73 | MC |
| SRR5110450 | panicle | Dawn + 14h | 0.65 | MC |
| SRR5110451 | panicle | Dawn + 14h | 1.48 | MC |
| SRR5110452 | panicle | Dawn + 14h | 5.18 | MC |
| SRR5110454 | panicle | Dawn + 17.5h | 0.44 | MC |
| SRR5110455 | panicle | Dawn + 17.5h | 1.26 | MC |
| SRR5110456 | panicle | Dawn + 17.5h | 4.66 | MC |
| SRR5110458 | panicle | Dawn + 21h | 2.28 | MC |
| SRR5110460 | panicle | Dawn + 21h | 2.04 | MC |
| SRR1213697 | endosprem | wt(mature seeds) | 0.37 | MC |
| SRR1633182 | panicle | WT | 1.45 | MC |
| SRR1633185 | panicle | WT | 1.72 | MC |
| SRR5126149 | root | "mock,1_day" | 0.51 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 0.39 | MC |
| SRR5126155 | root | "mock,7_days" | 0.49 | MC |
| SRR5126157 | root | "mock,7_days" | 0.54 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 0.42 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 0.45 | MC |
| SRR5126165 | root | "mock,14_days" | 0.35 | MC |
| SRR5126167 | root | "mock,14_days" | 0.28 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 0.89 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 0.37 | MC |
| SRR3472900 | root | nontransgenic_rice_plant | 0.43 | MC |
| SRR1213694 | root | wt | 0.28 | MC |
| SRR4947478 | root | control | 3.04 | MC |
| SRR4947479 | root | control | 0.63 | MC |
| SRR4947482 | root | Al | 0.88 | MC |
| SRR4947483 | root | Al | 2.17 | MC |
| SRR4947487 | root | control | 3.07 | MC |
| SRR4947489 | root | control | 3.78 | MC |
| SRR4947490 | root | Al | 2.38 | MC |
| SRR4947493 | root | Al | 2.33 | MC |
| SRR4947494 | root | control | 1.47 | MC |
| SRR4947497 | root | control | 2.72 | MC |
| SRR4947498 | root | Al | 3.73 | MC |
| SRR4947499 | root | Al | 2.53 | MC |
| SRR4947500 | root | Al | 2.39 | MC |
| SRR4947502 | root | control | 2.04 | MC |
| SRR4947503 | root | control | 2.02 | MC |
| SRR4947508 | root | Al | 4.72 | MC |
| SRR6502104 | root | 100 mM NaCl | 0.36 | MC |
| SRR6502105 | root | 100 mM NaCl | 0.74 | MC |
| SRR6502106 | root | control | 0.38 | MC |
| SRR6502107 | root | control | 0.30 | MC |
| SRR6502108 | root | control | 0.43 | MC |
| SRR6441554 | seedling | wild_type | 0.22 | MC |
| SRR2154086 | seedling | wt | 0.42 | MC |
| SRR2154083 | seedling | wt | 0.30 | MC |
| SRR2857719 | seedling | drought_stress_0h | 0.44 | MC |
| SRR2857721 | seedling | drought_stress_6h | 0.57 | MC |
| SRR1944583 | seedling | no_treatment | 0.67 | MC |
| SRR358791 | seedling | wt | 1.19 | MC |
| SRR358792 | seedling | wt | 0.83 | MC |
| SRR358793 | seedling | wt | 0.86 | MC |
| SRR358794 | seedling | wt | 1.15 | MC |
| SRR1288363 | shoot | "none,3_days_post_infection" | 2.25 | MC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 4.37 | MC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 4.80 | MC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 4.06 | MC |
| SRR4841743 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 3.10 | MC |
| SRR5796941 | shoot | "Control,22C for 10 min" | 0.55 | MC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 0.68 | MC |
| SRR5796943 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 0.34 | MC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 0.59 | MC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 0.91 | MC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 0.74 | MC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 0.80 | MC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 0.97 | MC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 0.66 | MC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 0.70 | MC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 0.34 | MC |
| SRR5796959 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 0.66 | MC |
| SRR5052708 | shoot_apical_meristem | 0_days_after_shift | 0.71 | MC |
| SRR5052709 | shoot_apical_meristem | 0_days_after_shift | 1.04 | MC |
| SRR5052710 | shoot_apical_meristem | 0_days_after_shift | 1.54 | MC |
| SRR5052711 | shoot_apical_meristem | 4_days_after_shift | 1.99 | MC |
| SRR5052713 | shoot_apical_meristem | 4_days_after_shift | 1.34 | MC |
| SRR5052714 | shoot_apical_meristem | 4_days_after_shift | 1.75 | MC |
| SRR5052719 | shoot_apical_meristem | 8_days_after_shift | 1.81 | MC |
| SRR5052720 | shoot_apical_meristem | 8_days_after_shift | 1.08 | MC |
| SRR5052721 | shoot_apical_meristem | 12_days_after_shift | 0.77 | MC |
| SRR5052722 | shoot_apical_meristem | 12_days_after_shift | 0.74 | MC |
| SRR5052724 | shoot_apical_meristem | 0_days_after_shift | 0.96 | MC |
| SRR5052725 | shoot_apical_meristem | 0_days_after_shift | 0.94 | MC |
| SRR5052726 | shoot_apical_meristem | 0_days_after_shift | 0.82 | MC |
| SRR5052727 | shoot_apical_meristem | 4_days_after_shift | 1.22 | MC |
| SRR5052728 | shoot_apical_meristem | 4_days_after_shift | 1.26 | MC |
| SRR5052730 | shoot_apical_meristem | 4_days_after_shift | 0.94 | MC |
| SRR5052731 | shoot_apical_meristem | 8_days_after_shift | 1.65 | MC |
| SRR5052732 | shoot_apical_meristem | 8_days_after_shift | 1.97 | MC |
| SRR5052733 | shoot_apical_meristem | 8_days_after_shift | 1.41 | MC |
| SRR5052734 | shoot_apical_meristem | 12_days_after_shift | 1.06 | MC |
| SRR7760292 | spikelet | control condition (29C) for 7 hrs | 0.50 | MC |
| SRR7760293 | spikelet | control condition (29C) for 7 hrs | 1.20 | MC |
| SRR7760294 | spikelet | high temperature treatment (38C) for 7 hrs | 1.30 | MC |
| SRR7760295 | spikelet | high temperature treatment (38C) for 7 hrs | 0.34 | MC |
| SRR7760296 | spikelet | high temperature treatment (38C) for 7 hrs | 1.38 | MC |
| SRR7760298 | spikelet | control condition (29C) for 7 hrs | 0.64 | MC |
| SRR7760299 | spikelet | control condition (29C) for 7 hrs | 3.54 | MC |
| SRR7760300 | spikelet | high temperature treatment (38C) for 7 hrs | 1.18 | MC |
| SRR7760301 | spikelet | high temperature treatment (38C) for 7 hrs | 0.79 | MC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 0.85 | MC |