| SRR4457249 | 2nd_leaf | DAH4 | 0.53 | MC |
| SRR4457250 | 2nd_leaf | DAH4 | 0.65 | MC |
| SRR4457251 | 2nd_leaf | DAH4 | 0.65 | MC |
| SRR4457252 | 2nd_leaf | DAH12 | 0.41 | MC |
| SRR4457254 | 2nd_leaf | DAH12 | 0.35 | MC |
| SRR4947495 | root | control | 1.20 | MC |
| SRR7265400 | coleoptile | 2dA | 0.90 | MC |
| SRR7265401 | coleoptile | 2dA | 1.17 | MC |
| SRR7265402 | coleoptile | 2dA | 0.93 | MC |
| SRR7265404 | coleoptile | 2dN | 0.33 | MC |
| SRR7265405 | coleoptile | 2dN | 0.37 | MC |
| SRR7265406 | coleoptile | 3dA | 0.91 | MC |
| SRR7265407 | coleoptile | 3dA | 1.23 | MC |
| SRR7265408 | coleoptile | 3dA | 0.81 | MC |
| SRR7265410 | coleoptile | 3dN | 0.81 | MC |
| SRR7265411 | coleoptile | 3dN | 0.42 | MC |
| SRR7265412 | coleoptile | 4dA | 1.35 | MC |
| SRR7265413 | coleoptile | 4dA | 2.85 | MC |
| SRR7265414 | coleoptile | 4dA | 2.30 | MC |
| SRR7265418 | coleoptile | 3dN1dA | 2.00 | MC |
| SRR7265419 | coleoptile | 3dN1dA | 2.02 | MC |
| SRR7265420 | coleoptile | 3dN1dA | 1.84 | MC |
| SRR7265388 | embryo | 12hA | 0.73 | MC |
| SRR7265389 | embryo | 12hA | 0.92 | MC |
| SRR7265390 | embryo | 12hA | 0.62 | MC |
| SRR7265391 | embryo | 12hN | 0.48 | MC |
| SRR7265394 | embryo | 24hA | 0.87 | MC |
| SRR7265395 | embryo | 24hA | 0.50 | MC |
| SRR7265396 | embryo | 24hA | 0.85 | MC |
| SRR4457232 | flag_leaf | DAH4 | 0.27 | MC |
| SRR4457233 | flag_leaf | DAH4 | 0.32 | MC |
| SRR4457237 | flag_leaf | DAH20 | 0.21 | MC |
| SRR4457243 | flag_leaf | DAH36 | 0.42 | MC |
| SRR2922623 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 1.15 | MC |
| SRR2922624 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 0.95 | MC |
| SRR1952778 | leaf | 48_hrs_after_inoculation_with_BLS256 | 1.30 | MC |
| SRR1952779 | leaf | 48_hrs_after_inoculation_with_BLS256 | 1.67 | MC |
| SRR1952780 | leaf | 48_hrs_after_inoculation_with_BLS256 | 2.66 | MC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 0.31 | MC |
| SRR1952782 | leaf | 48_hrs_after_inoculation_with_BLS279 | 0.84 | MC |
| SRR1952783 | leaf | 48_hrs_after_inoculation_with_BLS279 | 0.95 | MC |
| SRR1952785 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 1.42 | MC |
| SRR1952786 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 2.13 | MC |
| SRR1952787 | leaf | 48_hrs_after_inoculation_with_B8_12 | 1.58 | MC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 2.01 | MC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 2.48 | MC |
| SRR1952790 | leaf | 48_hrs_after_inoculation_with_L8 | 0.74 | MC |
| SRR1952791 | leaf | 48_hrs_after_inoculation_with_L8 | 2.04 | MC |
| SRR1952792 | leaf | 48_hrs_after_inoculation_with_L8 | 2.69 | MC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.85 | MC |
| SRR1952794 | leaf | 48_hrs_after_inoculation_with_RS105 | 2.60 | MC |
| SRR1952795 | leaf | 48_hrs_after_inoculation_with_RS105 | 3.21 | MC |
| SRR1952797 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 2.10 | MC |
| SRR1952798 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 1.61 | MC |
| SRR1952800 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 1.48 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 0.95 | MC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 0.86 | MC |
| SRR1952804 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 2.24 | MC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.60 | MC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 2.09 | MC |
| SRR1952807 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 1.31 | MC |
| SRR1952808 | leaf | 48_hrs_after_mock_inoculation | 0.74 | MC |
| SRR1761788 | leaf | "wild_type,drought,2" | 1.59 | MC |
| SRR1761789 | leaf | "wild_type,drought,2" | 0.51 | MC |
| SRR1761780 | leaf | "wild_type,drought,1" | 1.71 | MC |
| SRR1761781 | leaf | "wild_type,drought,1" | 0.67 | MC |
| SRR1761528 | leaf | drought | 1.80 | MC |
| SRR1761529 | leaf | drought | 0.62 | MC |
| SRR3209776 | leaf | Drought;Short_Day | 0.28 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 0.33 | MC |
| SRR1213693 | leaf | wt | 0.27 | MC |
| SRR6502085 | leaf | 100 mM NaCl | 0.35 | MC |
| SRR6502086 | leaf | 100 mM NaCl | 0.56 | MC |
| SRR6502102 | leaf | control | 0.39 | MC |
| SRR5856927 | leaf | control | 1.85 | MC |
| SRR5856928 | leaf | control | 1.75 | MC |
| SRR5856929 | leaf | control | 1.92 | MC |
| SRR5856930 | leaf | salt | 1.55 | MC |
| SRR5856931 | leaf | salt | 0.89 | MC |
| SRR5856932 | leaf | salt | 0.89 | MC |
| SRR5856933 | leaf | control | 1.92 | MC |
| SRR5856934 | leaf | control | 2.12 | MC |
| SRR5856935 | leaf | control | 1.78 | MC |
| SRR5856936 | leaf | salt | 1.59 | MC |
| SRR5856937 | leaf | salt | 1.11 | MC |
| SRR5856938 | leaf | salt | 1.20 | MC |
| SRR4947496 | root | control | 0.75 | MC |
| SRR5126147 | root | "mock,1_day" | 0.89 | MC |
| SRR5126148 | root | "mock,1_day" | 0.82 | MC |
| SRR5126149 | root | "mock,1_day" | 2.87 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 3.75 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 2.71 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 0.78 | MC |
| SRR5126153 | root | "mock,7_days" | 0.62 | MC |
| SRR5126155 | root | "mock,7_days" | 1.39 | MC |
| SRR5126157 | root | "mock,7_days" | 1.67 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 1.54 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 2.29 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 0.89 | MC |
| SRR5126165 | root | "mock,14_days" | 1.81 | MC |
| SRR5126167 | root | "mock,14_days" | 0.79 | MC |
| SRR5126169 | root | "mock,14_days" | 2.35 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 0.62 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 2.13 | MC |
| SRR3472900 | root | nontransgenic_rice_plant | 0.35 | MC |
| SRR1213695 | root | wt | 0.37 | MC |
| SRR4947478 | root | control | 1.43 | MC |
| SRR4947479 | root | control | 0.89 | MC |
| SRR4947480 | root | control | 0.96 | MC |
| SRR4947481 | root | control | 1.51 | MC |
| SRR4947482 | root | Al | 0.95 | MC |
| SRR4947483 | root | Al | 1.25 | MC |
| SRR4947484 | root | Al | 0.93 | MC |
| SRR4947485 | root | Al | 2.59 | MC |
| SRR4947487 | root | control | 1.63 | MC |
| SRR4947488 | root | control | 1.35 | MC |
| SRR4947489 | root | control | 1.32 | MC |
| SRR4947490 | root | Al | 1.75 | MC |
| SRR4947491 | root | Al | 1.25 | MC |
| SRR4947492 | root | Al | 2.09 | MC |
| SRR4947493 | root | Al | 0.97 | MC |
| SRR4947494 | root | control | 1.02 | MC |
| SRR4947497 | root | control | 1.27 | MC |
| SRR4947498 | root | Al | 0.82 | MC |
| SRR4947499 | root | Al | 0.84 | MC |
| SRR4947501 | root | Al | 1.07 | MC |
| SRR4947502 | root | control | 1.05 | MC |
| SRR4947503 | root | control | 1.57 | MC |
| SRR4947504 | root | control | 0.55 | MC |
| SRR4947505 | root | control | 1.57 | MC |
| SRR4947506 | root | Al | 0.90 | MC |
| SRR4947507 | root | Al | 0.80 | MC |
| SRR4947508 | root | Al | 0.76 | MC |
| SRR4947509 | root | Al | 0.55 | MC |
| SRR6502091 | root | 100 mM NaCl | 4.07 | MC |
| SRR6502092 | root | 100 mM NaCl | 2.95 | MC |
| SRR6502093 | root | 100 mM NaCl | 3.62 | MC |
| SRR6502094 | root | control | 0.99 | MC |
| SRR6502095 | root | control | 1.77 | MC |
| SRR6502096 | root | control | 0.95 | MC |
| SRR6502103 | root | 100 mM NaCl | 2.28 | MC |
| SRR6502104 | root | 100 mM NaCl | 3.21 | MC |
| SRR6502105 | root | 100 mM NaCl | 2.38 | MC |
| SRR6502106 | root | control | 1.68 | MC |
| SRR6502107 | root | control | 1.03 | MC |
| SRR6502108 | root | control | 1.51 | MC |
| SRR1740434 | root_differentiation_zone | wt | 0.87 | MC |
| SRR1740435 | root_differentiation_zone | wt | 1.71 | MC |
| SRR1740436 | root_differentiation_zone | wt | 0.71 | MC |
| SRR1740431 | root_elongation_zone | wt | 0.60 | MC |
| SRR1740432 | root_elongation_zone | wt | 1.03 | MC |
| SRR1740433 | root_elongation_zone | wt | 0.58 | MC |
| SRR1740429 | root_meristematic_zone | wt | 0.31 | MC |
| SRR2154086 | seedling | wt | 0.45 | MC |
| SRR2154087 | seedling | wt | 0.81 | MC |
| SRR2857719 | seedling | drought_stress_0h | 0.50 | MC |
| SRR2857720 | seedling | drought_stress_1h | 0.72 | MC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 2.30 | MC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 3.21 | MC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 4.28 | MC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 5.79 | MC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 6.45 | MC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 4.94 | MC |
| SRR4841741 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 1.64 | MC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 3.21 | MC |
| SRR3950244 | shoot | Drought_during_3_days;Fr13_inoculated | 0.21 | MC |
| SRR3950245 | shoot | Drought_during_3_days;Fr13_inoculated | 0.21 | MC |
| SRR3950246 | shoot | Drought_during_3_days;Fr13_inoculated | 0.25 | MC |
| SRR3950247 | shoot | No_DIS;Fr13_inoculated | 0.18 | MC |
| SRR3950248 | shoot | No_DIS;Fr13_inoculated | 0.33 | MC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 0.36 | MC |