| SRR4457258 | 2nd_leaf | DAH28 | 0.42 | MC |
| SRR4457262 | 2nd_leaf | DAH36 | 1.23 | MC |
| SRR358795 | callus | wt | 7.46 | MC |
| SRR5560727 | caryopsis | wild_type | 0.28 | MC |
| SRR5560729 | caryopsis | wild_type | 0.29 | MC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 0.48 | MC |
| SRR7265400 | coleoptile | 2dA | 1.54 | MC |
| SRR7265401 | coleoptile | 2dA | 1.54 | MC |
| SRR7265402 | coleoptile | 2dA | 0.79 | MC |
| SRR7265403 | coleoptile | 2dN | 1.73 | MC |
| SRR7265404 | coleoptile | 2dN | 1.18 | MC |
| SRR7265405 | coleoptile | 2dN | 1.84 | MC |
| SRR7265409 | coleoptile | 3dN | 0.93 | MC |
| SRR7265411 | coleoptile | 3dN | 0.41 | MC |
| SRR7265413 | coleoptile | 4dA | 1.13 | MC |
| SRR7265414 | coleoptile | 4dA | 0.84 | MC |
| SRR7265417 | coleoptile | 4dN | 0.44 | MC |
| SRR7265420 | coleoptile | 3dN1dA | 1.07 | MC |
| SRR4104643 | crown | "Zn_Efficient,8_days_of_treatment" | 0.59 | MC |
| SRR7265373 | embryo | dry seed 0 h | 0.51 | MC |
| SRR7265374 | embryo | dry seed 0 h | 0.94 | MC |
| SRR7265376 | embryo | 1hA | 0.62 | MC |
| SRR7265378 | embryo | 1hA | 0.71 | MC |
| SRR7265379 | embryo | 1hN | 0.46 | MC |
| SRR7265381 | embryo | 1hN | 0.59 | MC |
| SRR7265382 | embryo | 3hA | 0.96 | MC |
| SRR7265383 | embryo | 3hA | 0.98 | MC |
| SRR7265384 | embryo | 3hA | 1.23 | MC |
| SRR7265386 | embryo | 3hN | 0.56 | MC |
| SRR7265387 | embryo | 3hN | 0.85 | MC |
| SRR7265388 | embryo | 12hA | 1.05 | MC |
| SRR7265389 | embryo | 12hA | 1.65 | MC |
| SRR7265390 | embryo | 12hA | 1.92 | MC |
| SRR7265391 | embryo | 12hN | 1.98 | MC |
| SRR7265392 | embryo | 12hN | 0.69 | MC |
| SRR7265393 | embryo | 12hN | 0.89 | MC |
| SRR7265394 | embryo | 24hA | 2.04 | MC |
| SRR7265395 | embryo | 24hA | 1.22 | MC |
| SRR7265396 | embryo | 24hA | 1.70 | MC |
| SRR7265397 | embryo | 24hN | 1.79 | MC |
| SRR7265398 | embryo | 24hN | 0.93 | MC |
| SRR7265399 | embryo | 24hN | 1.07 | MC |
| SRR4457235 | flag_leaf | DAH12 | 0.38 | MC |
| SRR4457237 | flag_leaf | DAH20 | 0.32 | MC |
| SRR4457238 | flag_leaf | DAH20 | 0.71 | MC |
| SRR4457239 | flag_leaf | DAH20 | 0.44 | MC |
| SRR4457240 | flag_leaf | DAH28 | 0.56 | MC |
| SRR4457241 | flag_leaf | DAH28 | 0.43 | MC |
| SRR4457242 | flag_leaf | DAH28 | 0.42 | MC |
| SRR4457246 | flag_leaf | DAH44 | 0.42 | MC |
| SRR4457247 | flag_leaf | DAH44 | 0.78 | MC |
| SRR4457248 | flag_leaf | DAH44 | 1.40 | MC |
| SRR1213690 | flower | wt(flower buds) | 0.59 | MC |
| SRR1213691 | flower | wt | 0.33 | MC |
| SRR8060836 | leaf | wild_type | 0.45 | MC |
| SRR2922623 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 0.68 | MC |
| SRR2922624 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 0.54 | MC |
| SRR1952778 | leaf | 48_hrs_after_inoculation_with_BLS256 | 0.91 | MC |
| SRR1952780 | leaf | 48_hrs_after_inoculation_with_BLS256 | 0.87 | MC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 0.61 | MC |
| SRR1952782 | leaf | 48_hrs_after_inoculation_with_BLS279 | 0.86 | MC |
| SRR1952784 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 0.70 | MC |
| SRR1952787 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.77 | MC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.85 | MC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.61 | MC |
| SRR1952792 | leaf | 48_hrs_after_inoculation_with_L8 | 0.66 | MC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.59 | MC |
| SRR1952794 | leaf | 48_hrs_after_inoculation_with_RS105 | 1.11 | MC |
| SRR1952795 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.71 | MC |
| SRR1952796 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 1.11 | MC |
| SRR1952797 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 0.76 | MC |
| SRR1952799 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 1.53 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 1.02 | MC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 0.83 | MC |
| SRR1952803 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 1.24 | MC |
| SRR1952804 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 1.55 | MC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 1.10 | MC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 1.09 | MC |
| SRR1952807 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.78 | MC |
| SRR1952808 | leaf | 48_hrs_after_mock_inoculation | 0.79 | MC |
| SRR1952810 | leaf | 48_hrs_after_mock_inoculation | 0.42 | MC |
| SRR3209772 | leaf | Drought;Long_Day | 0.61 | MC |
| SRR3209778 | leaf | Drought;Long_Day | 0.52 | MC |
| SRR3209779 | leaf | Watered;Short_Day | 0.32 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 0.61 | MC |
| SRR1213693 | leaf | wt | 0.70 | MC |
| SRR6502087 | leaf | 100 mM NaCl | 0.45 | MC |
| SRR5856931 | leaf | salt | 0.18 | MC |
| SRR6168976 | leaf | 0.5% Na2CO3 solution for 36h | 0.42 | MC |
| SRR6168977 | leaf | 0.5% Na2CO3 solution for 36h | 0.38 | MC |
| SRR8582892 | panicle | PM | 1.40 | MC |
| SRR5110429 | panicle | Dawn | 2.54 | MC |
| SRR5110432 | panicle | Dawn | 0.64 | MC |
| SRR5110433 | panicle | Dawn + 3.5h | 0.83 | MC |
| SRR5110435 | panicle | Dawn + 3.5h | 0.31 | MC |
| SRR5110437 | panicle | Dawn + 7h | 0.57 | MC |
| SRR5110442 | panicle | Dawn + 10.5h | 0.79 | MC |
| SRR5110443 | panicle | Dawn + 10.5h | 0.42 | MC |
| SRR5110444 | panicle | Dawn + 10.5h | 1.64 | MC |
| SRR5110445 | panicle | Dusk | 1.15 | MC |
| SRR5110446 | panicle | Dusk | 0.71 | MC |
| SRR5110447 | panicle | Dusk | 0.85 | MC |
| SRR5110448 | panicle | Dusk | 1.19 | MC |
| SRR5110450 | panicle | Dawn + 14h | 1.33 | MC |
| SRR5110451 | panicle | Dawn + 14h | 0.90 | MC |
| SRR5110452 | panicle | Dawn + 14h | 2.79 | MC |
| SRR5110456 | panicle | Dawn + 17.5h | 1.00 | MC |
| SRR5110457 | panicle | Dawn + 21h | 1.17 | MC |
| SRR5110458 | panicle | Dawn + 21h | 0.79 | MC |
| SRR5110459 | panicle | Dawn + 21h | 0.62 | MC |
| SRR5110460 | panicle | Dawn + 21h | 1.40 | MC |
| SRR1213696 | endosprem | wt(milk grains) | 0.22 | MC |
| SRR1633182 | panicle | WT | 4.17 | MC |
| SRR5278375 | pistil | "Balilla,S1" | 0.31 | MC |
| SRR5278378 | pistil | "Balilla,S3" | 0.60 | MC |
| SRR5278379 | pistil | "Balilla,S3" | 0.49 | MC |
| SRR5126149 | root | "mock,1_day" | 0.58 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 0.42 | MC |
| SRR5126155 | root | "mock,7_days" | 0.40 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 0.81 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 0.51 | MC |
| SRR5126165 | root | "mock,14_days" | 0.39 | MC |
| SRR5126167 | root | "mock,14_days" | 0.49 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 0.36 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 0.49 | MC |
| SRR1213694 | root | wt | 0.32 | MC |
| SRR1213695 | root | wt | 0.39 | MC |
| SRR4947479 | root | control | 0.78 | MC |
| SRR4947490 | root | Al | 1.19 | MC |
| SRR4947498 | root | Al | 0.51 | MC |
| SRR4947505 | root | control | 0.50 | MC |
| SRR6502094 | root | control | 0.41 | MC |
| SRR6502096 | root | control | 0.42 | MC |
| SRR6502103 | root | 100 mM NaCl | 0.41 | MC |
| SRR6502105 | root | 100 mM NaCl | 0.29 | MC |
| SRR6502107 | root | control | 0.28 | MC |
| SRR1740436 | root_differentiation_zone | wt | 0.34 | MC |
| SRR1740432 | root_elongation_zone | wt | 0.40 | MC |
| SRR1740429 | root_meristematic_zone | wt | 1.77 | MC |
| SRR1740430 | root_meristematic_zone | wt | 1.00 | MC |
| SRR2154084 | seedling | wt | 0.55 | MC |
| SRR358792 | seedling | wt | 1.97 | MC |
| SRR358794 | seedling | wt | 4.44 | MC |
| SRR3950245 | shoot | Drought_during_3_days;Fr13_inoculated | 0.34 | MC |
| SRR3950252 | shoot | Drought_during_3_days;_mock_inoculated | 0.60 | MC |
| SRR3950255 | shoot | No_DIS;_mock_inoculated | 0.39 | MC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 0.42 | MC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 0.72 | MC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 0.34 | MC |
| SRR5796958 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 0.41 | MC |
| SRR5052708 | shoot_apical_meristem | 0_days_after_shift | 1.48 | MC |
| SRR5052709 | shoot_apical_meristem | 0_days_after_shift | 1.42 | MC |
| SRR5052710 | shoot_apical_meristem | 0_days_after_shift | 1.85 | MC |
| SRR5052713 | shoot_apical_meristem | 4_days_after_shift | 1.05 | MC |
| SRR5052716 | shoot_apical_meristem | 8_days_after_shift | 1.57 | MC |
| SRR5052719 | shoot_apical_meristem | 8_days_after_shift | 0.62 | MC |
| SRR5052720 | shoot_apical_meristem | 8_days_after_shift | 2.27 | MC |
| SRR5052721 | shoot_apical_meristem | 12_days_after_shift | 1.61 | MC |
| SRR5052722 | shoot_apical_meristem | 12_days_after_shift | 1.13 | MC |
| SRR5052723 | shoot_apical_meristem | 12_days_after_shift | 0.93 | MC |
| SRR5052724 | shoot_apical_meristem | 0_days_after_shift | 1.10 | MC |
| SRR5052725 | shoot_apical_meristem | 0_days_after_shift | 1.43 | MC |
| SRR5052726 | shoot_apical_meristem | 0_days_after_shift | 0.74 | MC |
| SRR5052728 | shoot_apical_meristem | 4_days_after_shift | 0.98 | MC |
| SRR5052730 | shoot_apical_meristem | 4_days_after_shift | 1.30 | MC |
| SRR5052732 | shoot_apical_meristem | 8_days_after_shift | 1.78 | MC |
| SRR5052733 | shoot_apical_meristem | 8_days_after_shift | 0.71 | MC |
| SRR5052734 | shoot_apical_meristem | 12_days_after_shift | 0.50 | MC |
| SRR5052735 | shoot_apical_meristem | 12_days_after_shift | 1.64 | MC |
| SRR1617550 | shoot_apical_meristem | no collect | 1.05 | MC |
| SRR1617554 | shoot_apical_meristem | no collect | 1.29 | MC |
| SRR1617556 | shoot_apical_meristem | no collect | 1.42 | MC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 0.96 | MC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 0.94 | MC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 0.47 | MC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 1.00 | MC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 1.16 | MC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 0.56 | MC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 0.37 | MC |
| SRR7760292 | spikelet | control condition (29C) for 7 hrs | 0.36 | MC |
| SRR7760294 | spikelet | high temperature treatment (38C) for 7 hrs | 0.83 | MC |
| SRR7760295 | spikelet | high temperature treatment (38C) for 7 hrs | 0.51 | MC |
| SRR7760296 | spikelet | high temperature treatment (38C) for 7 hrs | 0.84 | MC |
| SRR7760300 | spikelet | high temperature treatment (38C) for 7 hrs | 0.19 | MC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 0.33 | MC |