| SRR4457249 | 2nd_leaf | DAH4 | 2.48 | MC |
| SRR4457250 | 2nd_leaf | DAH4 | 2.92 | MC |
| SRR4457251 | 2nd_leaf | DAH4 | 2.03 | MC |
| SRR4457252 | 2nd_leaf | DAH12 | 2.35 | MC |
| SRR4457253 | 2nd_leaf | DAH12 | 2.62 | MC |
| SRR4457254 | 2nd_leaf | DAH12 | 2.91 | MC |
| SRR4457255 | 2nd_leaf | DAH20 | 1.15 | MC |
| SRR4457256 | 2nd_leaf | DAH20 | 0.73 | MC |
| SRR4457257 | 2nd_leaf | DAH20 | 0.97 | MC |
| SRR4457258 | 2nd_leaf | DAH28 | 0.61 | MC |
| SRR4457259 | 2nd_leaf | DAH28 | 1.50 | MC |
| SRR4457260 | 2nd_leaf | DAH28 | 1.13 | MC |
| SRR4457261 | 2nd_leaf | DAH36 | 0.62 | MC |
| SRR4457264 | 2nd_leaf | DAH44 | 0.83 | MC |
| SRR4457265 | 2nd_leaf | DAH44 | 0.68 | MC |
| SRR4457266 | 2nd_leaf | DAH44 | 1.49 | MC |
| SRR6320498 | carpel | wt | 1.43 | MC |
| SRR5560727 | caryopsis | wild_type | 0.23 | MC |
| SRR5560729 | caryopsis | wild_type | 0.32 | MC |
| SRR4947495 | root | control | 1.16 | MC |
| SRR4104638 | crown | "Zn_deficiency,8_days_of_treatment" | 1.53 | MC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 0.43 | MC |
| SRR7265380 | embryo | 1hN | 0.50 | MC |
| SRR7265384 | embryo | 3hA | 0.34 | MC |
| SRR4457231 | flag_leaf | DAH4 | 2.10 | MC |
| SRR4457232 | flag_leaf | DAH4 | 2.43 | MC |
| SRR4457233 | flag_leaf | DAH4 | 2.37 | MC |
| SRR4457234 | flag_leaf | DAH12 | 2.25 | MC |
| SRR4457236 | flag_leaf | DAH12 | 3.29 | MC |
| SRR4457237 | flag_leaf | DAH20 | 1.00 | MC |
| SRR4457238 | flag_leaf | DAH20 | 2.05 | MC |
| SRR4457239 | flag_leaf | DAH20 | 1.22 | MC |
| SRR4457240 | flag_leaf | DAH28 | 1.74 | MC |
| SRR4457241 | flag_leaf | DAH28 | 1.53 | MC |
| SRR4457242 | flag_leaf | DAH28 | 0.89 | MC |
| SRR4457243 | flag_leaf | DAH36 | 0.96 | MC |
| SRR4457244 | flag_leaf | DAH36 | 1.05 | MC |
| SRR4457246 | flag_leaf | DAH44 | 0.55 | MC |
| SRR4457248 | flag_leaf | DAH44 | 0.86 | MC |
| SRR8060835 | leaf | wild_type | 1.22 | MC |
| SRR8060836 | leaf | wild_type | 3.08 | MC |
| SRR8060837 | leaf | wild_type | 0.70 | MC |
| SRR8240824 | leaf | wild_type | 1.45 | MC |
| SRR8240825 | leaf | wild_type | 0.51 | MC |
| SRR8240826 | leaf | wild_type | 2.11 | MC |
| SRR8240818 | leaf | wild_type | 1.69 | MC |
| SRR8240819 | leaf | wild_type | 0.58 | MC |
| SRR8240820 | leaf | wild_type | 2.17 | MC |
| SRR2922622 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 0.71 | MC |
| SRR1952796 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 0.79 | MC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.34 | MC |
| SRR1952808 | leaf | 48_hrs_after_mock_inoculation | 0.77 | MC |
| SRR1952810 | leaf | 48_hrs_after_mock_inoculation | 0.46 | MC |
| SRR1761789 | leaf | "wild_type,drought,2" | 0.89 | MC |
| SRR1761790 | leaf | "wild_type,control,2" | 1.80 | MC |
| SRR1761791 | leaf | "wild_type,control,2" | 0.64 | MC |
| SRR1761780 | leaf | "wild_type,drought,1" | 0.46 | MC |
| SRR1761781 | leaf | "wild_type,drought,1" | 0.89 | MC |
| SRR1761782 | leaf | "wild_type,control,1" | 1.80 | MC |
| SRR1761783 | leaf | "wild_type,control,1" | 0.64 | MC |
| SRR1761529 | leaf | drought | 0.89 | MC |
| SRR1761530 | leaf | control | 1.80 | MC |
| SRR1761531 | leaf | control | 0.64 | MC |
| SRR504365 | leaf | wt | 0.39 | MC |
| SRR6417964 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 0.71 | MC |
| SRR6417968 | leaf | H2O_control | 0.51 | MC |
| SRR3209769 | leaf | Watered;Long_Day | 1.07 | MC |
| SRR3209770 | leaf | Watered;Long_Day | 2.57 | MC |
| SRR3209771 | leaf | Drought;Long_Day | 0.76 | MC |
| SRR3209772 | leaf | Drought;Long_Day | 1.65 | MC |
| SRR3209773 | leaf | Watered;Short_Day | 0.60 | MC |
| SRR3209774 | leaf | Watered;Short_Day | 0.31 | MC |
| SRR3209775 | leaf | Drought;Short_Day | 1.48 | MC |
| SRR3209776 | leaf | Drought;Short_Day | 1.50 | MC |
| SRR3209777 | leaf | Watered;Long_Day | 0.33 | MC |
| SRR3209778 | leaf | Drought;Long_Day | 0.65 | MC |
| SRR3209779 | leaf | Watered;Short_Day | 0.22 | MC |
| SRR3209780 | leaf | Drought;Short_Day | 1.91 | MC |
| SRR8611901 | leaf | Non-inoculated | 0.38 | MC |
| SRR8611902 | leaf | Non-inoculated | 0.39 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 0.57 | MC |
| SRR1213692 | leaf | wt | 0.93 | MC |
| SRR6502085 | leaf | 100 mM NaCl | 0.42 | MC |
| SRR6502086 | leaf | 100 mM NaCl | 0.62 | MC |
| SRR6502087 | leaf | 100 mM NaCl | 0.49 | MC |
| SRR6502090 | leaf | control | 0.82 | MC |
| SRR6502097 | leaf | 100 mM NaCl | 1.57 | MC |
| SRR6502098 | leaf | 100 mM NaCl | 1.05 | MC |
| SRR6502099 | leaf | 100 mM NaCl | 0.98 | MC |
| SRR6502101 | leaf | control | 0.64 | MC |
| SRR5856930 | leaf | salt | 0.17 | MC |
| SRR5856931 | leaf | salt | 0.18 | MC |
| SRR5856938 | leaf | salt | 0.27 | MC |
| SRR6053394 | leaf | ethanol solvent (untreated control) | 1.17 | MC |
| SRR6053395 | leaf | gibberellic acid (GA) | 2.19 | MC |
| SRR6168973 | leaf | none (control) | 0.83 | MC |
| SRR6168974 | leaf | none (control) | 0.29 | MC |
| SRR6168984 | leaf | 0.5% Na2CO3 solution for 36h | 0.25 | MC |
| SRR8582888 | panicle | AM | 0.33 | MC |
| SRR8582889 | panicle | AM | 0.23 | MC |
| SRR8582890 | panicle | AM | 0.33 | MC |
| SRR8582893 | panicle | PM | 0.41 | MC |
| SRR5110429 | panicle | Dawn | 1.34 | MC |
| SRR5110430 | panicle | Dawn | 1.82 | MC |
| SRR5110431 | panicle | Dawn | 1.93 | MC |
| SRR5110432 | panicle | Dawn | 2.66 | MC |
| SRR5110433 | panicle | Dawn + 3.5h | 1.60 | MC |
| SRR5110434 | panicle | Dawn + 3.5h | 2.85 | MC |
| SRR5110435 | panicle | Dawn + 3.5h | 1.66 | MC |
| SRR5110436 | panicle | Dawn + 3.5h | 1.21 | MC |
| SRR5110437 | panicle | Dawn + 7h | 1.01 | MC |
| SRR5110439 | panicle | Dawn + 7h | 1.41 | MC |
| SRR5110440 | panicle | Dawn + 7h | 1.49 | MC |
| SRR5110442 | panicle | Dawn + 10.5h | 1.62 | MC |
| SRR5110443 | panicle | Dawn + 10.5h | 1.56 | MC |
| SRR5110444 | panicle | Dawn + 10.5h | 0.66 | MC |
| SRR5110446 | panicle | Dusk | 2.19 | MC |
| SRR5110447 | panicle | Dusk | 1.92 | MC |
| SRR5110448 | panicle | Dusk | 1.92 | MC |
| SRR5110449 | panicle | Dawn + 14h | 0.87 | MC |
| SRR5110450 | panicle | Dawn + 14h | 1.31 | MC |
| SRR5110451 | panicle | Dawn + 14h | 0.95 | MC |
| SRR5110452 | panicle | Dawn + 14h | 2.22 | MC |
| SRR5110453 | panicle | Dawn + 17.5h | 2.29 | MC |
| SRR5110454 | panicle | Dawn + 17.5h | 2.50 | MC |
| SRR5110455 | panicle | Dawn + 17.5h | 2.74 | MC |
| SRR5110456 | panicle | Dawn + 17.5h | 0.79 | MC |
| SRR5110457 | panicle | Dawn + 21h | 1.43 | MC |
| SRR5110459 | panicle | Dawn + 21h | 3.13 | MC |
| SRR5110460 | panicle | Dawn + 21h | 2.99 | MC |
| SRR1633185 | panicle | WT | 0.37 | MC |
| SRR5278374 | pistil | "Balilla,S1" | 1.09 | MC |
| SRR5278375 | pistil | "Balilla,S1" | 1.35 | MC |
| SRR5278376 | pistil | "Balilla,S2" | 0.82 | MC |
| SRR5278377 | pistil | "Balilla,S2" | 0.80 | MC |
| SRR5278378 | pistil | "Balilla,S3" | 1.35 | MC |
| SRR1213695 | root | wt | 0.22 | MC |
| SRR4947479 | root | control | 0.46 | MC |
| SRR4947482 | root | Al | 0.57 | MC |
| SRR4947483 | root | Al | 0.42 | MC |
| SRR4947490 | root | Al | 1.12 | MC |
| SRR4947494 | root | control | 0.46 | MC |
| SRR2154082 | seedling | wt | 0.48 | MC |
| SRR2154084 | seedling | wt | 0.36 | MC |
| SRR2154085 | seedling | wt | 0.49 | MC |
| SRR3098741 | seedling | wt | 0.37 | MC |
| SRR3098742 | seedling | wt | 0.35 | MC |
| SRR3098743 | seedling | wt | 0.74 | MC |
| SRR1944583 | seedling | no_treatment | 1.01 | MC |
| SRR1288363 | shoot | "none,3_days_post_infection" | 2.64 | MC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 3.73 | MC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 5.85 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 13.31 | MC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 6.17 | MC |
| SRR4841741 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 2.92 | MC |
| SRR3950244 | shoot | Drought_during_3_days;Fr13_inoculated | 0.55 | MC |
| SRR3950245 | shoot | Drought_during_3_days;Fr13_inoculated | 0.36 | MC |
| SRR3950246 | shoot | Drought_during_3_days;Fr13_inoculated | 0.31 | MC |
| SRR3950247 | shoot | No_DIS;Fr13_inoculated | 1.33 | MC |
| SRR3950250 | shoot | Drought_during_3_days;_mock_inoculated | 0.72 | MC |
| SRR3950251 | shoot | Drought_during_3_days;_mock_inoculated | 1.03 | MC |
| SRR3950253 | shoot | No_DIS;_mock_inoculated | 1.17 | MC |
| SRR3950254 | shoot | No_DIS;_mock_inoculated | 0.95 | MC |
| SRR3950255 | shoot | No_DIS;_mock_inoculated | 1.63 | MC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 0.33 | MC |
| SRR5796943 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 0.60 | MC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 0.92 | MC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 1.00 | MC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 0.89 | MC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 0.47 | MC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 0.66 | MC |
| SRR5796958 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 0.42 | MC |
| SRR5796959 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 0.83 | MC |
| SRR5052708 | shoot_apical_meristem | 0_days_after_shift | 0.60 | MC |
| SRR5052709 | shoot_apical_meristem | 0_days_after_shift | 0.43 | MC |
| SRR5052710 | shoot_apical_meristem | 0_days_after_shift | 1.08 | MC |
| SRR5052711 | shoot_apical_meristem | 4_days_after_shift | 1.87 | MC |
| SRR5052713 | shoot_apical_meristem | 4_days_after_shift | 1.11 | MC |
| SRR5052714 | shoot_apical_meristem | 4_days_after_shift | 0.86 | MC |
| SRR5052716 | shoot_apical_meristem | 8_days_after_shift | 0.89 | MC |
| SRR5052723 | shoot_apical_meristem | 12_days_after_shift | 0.54 | MC |
| SRR5052724 | shoot_apical_meristem | 0_days_after_shift | 0.52 | MC |
| SRR5052726 | shoot_apical_meristem | 0_days_after_shift | 0.57 | MC |
| SRR5052728 | shoot_apical_meristem | 4_days_after_shift | 1.04 | MC |
| SRR5052730 | shoot_apical_meristem | 4_days_after_shift | 1.33 | MC |
| SRR5052731 | shoot_apical_meristem | 8_days_after_shift | 1.37 | MC |
| SRR5052732 | shoot_apical_meristem | 8_days_after_shift | 1.32 | MC |
| SRR5052734 | shoot_apical_meristem | 12_days_after_shift | 1.04 | MC |
| SRR5052735 | shoot_apical_meristem | 12_days_after_shift | 4.92 | MC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 0.99 | MC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 0.61 | MC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 1.01 | MC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 2.24 | MC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 1.98 | MC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 2.01 | MC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 0.53 | MC |
| SRR7760294 | spikelet | high temperature treatment (38C) for 7 hrs | 0.47 | MC |
| SRR7760300 | spikelet | high temperature treatment (38C) for 7 hrs | 0.33 | MC |
| SRR7760301 | spikelet | high temperature treatment (38C) for 7 hrs | 0.46 | MC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 0.13 | MC |