| SRR4457249 | 2nd_leaf | DAH4 | 4.15 | MC |
| SRR4457261 | 2nd_leaf | DAH36 | 4.94 | MC |
| SRR4457263 | 2nd_leaf | DAH36 | 2.72 | MC |
| SRR3745125 | anther | wt | 1.09 | MC |
| SRR3745126 | anther | wt | 1.64 | MC |
| SRR3745127 | anther | wt | 0.78 | MC |
| SRR6320473 | carpel | wt | 2.27 | MC |
| SRR6320498 | carpel | wt | 2.29 | MC |
| SRR5560727 | caryopsis | wild_type | 2.99 | MC |
| SRR5560728 | caryopsis | wild_type | 4.15 | MC |
| SRR5560729 | caryopsis | wild_type | 4.51 | MC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 3.50 | MC |
| SRR7265403 | coleoptile | 2dN | 2.67 | MC |
| SRR7265404 | coleoptile | 2dN | 2.21 | MC |
| SRR7265405 | coleoptile | 2dN | 2.41 | MC |
| SRR7265409 | coleoptile | 3dN | 3.56 | MC |
| SRR7265410 | coleoptile | 3dN | 3.11 | MC |
| SRR7265411 | coleoptile | 3dN | 3.62 | MC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 2.59 | MC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 1.56 | MC |
| SRR4104637 | crown | "Zn_deficiency,8_days_of_treatment" | 2.04 | MC |
| SRR4104647 | crown | "Zn_Efficient,8_days_of_treatment" | 0.46 | MC |
| SRR4104640 | crown | "Zn_deficiency,8_days_of_treatment" | 0.84 | MC |
| SRR4104641 | crown | "Zn_deficiency,8_days_of_treatment" | 0.84 | MC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 2.01 | MC |
| SRR4104643 | crown | "Zn_Efficient,8_days_of_treatment" | 1.66 | MC |
| SRR4104644 | crown | "Zn_Efficient,8_days_of_treatment" | 1.90 | MC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 1.06 | MC |
| SRR4104646 | crown | "Zn_Efficient,8_days_of_treatment" | 0.88 | MC |
| SRR7265373 | embryo | dry seed 0 h | 1.53 | MC |
| SRR7265374 | embryo | dry seed 0 h | 2.36 | MC |
| SRR7265375 | embryo | dry seed 0 h | 0.39 | MC |
| SRR7265376 | embryo | 1hA | 1.41 | MC |
| SRR7265377 | embryo | 1hA | 1.46 | MC |
| SRR7265378 | embryo | 1hA | 1.66 | MC |
| SRR7265379 | embryo | 1hN | 1.46 | MC |
| SRR7265380 | embryo | 1hN | 1.57 | MC |
| SRR7265381 | embryo | 1hN | 1.40 | MC |
| SRR7265382 | embryo | 3hA | 0.77 | MC |
| SRR7265383 | embryo | 3hA | 0.90 | MC |
| SRR7265384 | embryo | 3hA | 0.50 | MC |
| SRR7265385 | embryo | 3hN | 1.30 | MC |
| SRR7265386 | embryo | 3hN | 1.08 | MC |
| SRR7265387 | embryo | 3hN | 1.43 | MC |
| SRR7265388 | embryo | 12hA | 1.80 | MC |
| SRR7265389 | embryo | 12hA | 3.04 | MC |
| SRR7265390 | embryo | 12hA | 3.14 | MC |
| SRR7265391 | embryo | 12hN | 1.78 | MC |
| SRR7265392 | embryo | 12hN | 2.01 | MC |
| SRR7265393 | embryo | 12hN | 1.48 | MC |
| SRR7265394 | embryo | 24hA | 4.64 | MC |
| SRR7265395 | embryo | 24hA | 4.01 | MC |
| SRR7265397 | embryo | 24hN | 2.40 | MC |
| SRR7265398 | embryo | 24hN | 2.00 | MC |
| SRR7265399 | embryo | 24hN | 1.86 | MC |
| SRR2338866 | endosprem | control | 4.59 | MC |
| SRR2338867 | endosprem | control | 1.32 | MC |
| SRR2338869 | endosprem | high_temperature | 2.72 | MC |
| SRR4457244 | flag_leaf | DAH36 | 1.90 | MC |
| SRR1213691 | flower | wt | 2.35 | MC |
| SRR8060836 | leaf | wild_type | 3.19 | MC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 4.05 | MC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 3.42 | MC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 3.14 | MC |
| SRR1952796 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 4.39 | MC |
| SRR1952798 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 6.68 | MC |
| SRR1952809 | leaf | 48_hrs_after_mock_inoculation | 5.64 | MC |
| SRR5856927 | leaf | control | 1.36 | MC |
| SRR5856928 | leaf | control | 1.47 | MC |
| SRR5856929 | leaf | control | 0.94 | MC |
| SRR5856930 | leaf | salt | 0.84 | MC |
| SRR5856931 | leaf | salt | 0.97 | MC |
| SRR5856932 | leaf | salt | 0.84 | MC |
| SRR5856933 | leaf | control | 1.53 | MC |
| SRR5856934 | leaf | control | 0.89 | MC |
| SRR5856935 | leaf | control | 1.46 | MC |
| SRR5856936 | leaf | salt | 1.23 | MC |
| SRR5856937 | leaf | salt | 0.90 | MC |
| SRR5856938 | leaf | salt | 0.62 | MC |
| SRR6168974 | leaf | none (control) | 2.55 | MC |
| SRR6168977 | leaf | 0.5% Na2CO3 solution for 36h | 1.42 | MC |
| SRR6168980 | leaf | none (control) | 0.41 | MC |
| SRR6168981 | leaf | none (control) | 0.88 | MC |
| SRR6168982 | leaf | 0.5% Na2CO3 solution for 36h | 0.34 | MC |
| SRR6168983 | leaf | 0.5% Na2CO3 solution for 36h | 0.19 | MC |
| SRR6168984 | leaf | 0.5% Na2CO3 solution for 36h | 0.86 | MC |
| SRR8582893 | panicle | PM | 4.19 | MC |
| SRR5110430 | panicle | Dawn | 4.58 | MC |
| SRR5110431 | panicle | Dawn | 3.53 | MC |
| SRR4947496 | root | control | 0.69 | MC |
| SRR5110434 | panicle | Dawn + 3.5h | 1.10 | MC |
| SRR5110438 | panicle | Dawn + 7h | 2.47 | MC |
| SRR5110439 | panicle | Dawn + 7h | 3.76 | MC |
| SRR5110440 | panicle | Dawn + 7h | 1.38 | MC |
| SRR5110441 | panicle | Dawn + 10.5h | 4.33 | MC |
| SRR5110442 | panicle | Dawn + 10.5h | 1.95 | MC |
| SRR5110445 | panicle | Dusk | 2.81 | MC |
| SRR5110449 | panicle | Dawn + 14h | 2.09 | MC |
| SRR5110450 | panicle | Dawn + 14h | 3.21 | MC |
| SRR5110453 | panicle | Dawn + 17.5h | 1.91 | MC |
| SRR5110455 | panicle | Dawn + 17.5h | 1.49 | MC |
| SRR5110457 | panicle | Dawn + 21h | 3.25 | MC |
| SRR5110458 | panicle | Dawn + 21h | 1.76 | MC |
| SRR5110459 | panicle | Dawn + 21h | 1.47 | MC |
| SRR1213696 | endosprem | wt(milk grains) | 1.39 | MC |
| SRR1213697 | endosprem | wt(mature seeds) | 0.82 | MC |
| SRR1633182 | panicle | WT | 1.96 | MC |
| SRR1633185 | panicle | WT | 1.84 | MC |
| SRR5278374 | pistil | "Balilla,S1" | 0.98 | MC |
| SRR5278375 | pistil | "Balilla,S1" | 1.36 | MC |
| SRR5278376 | pistil | "Balilla,S2" | 1.94 | MC |
| SRR5278377 | pistil | "Balilla,S2" | 1.49 | MC |
| SRR5278378 | pistil | "Balilla,S3" | 4.18 | MC |
| SRR5278379 | pistil | "Balilla,S3" | 2.58 | MC |
| SRR5126147 | root | "mock,1_day" | 0.71 | MC |
| SRR5126148 | root | "mock,1_day" | 0.53 | MC |
| SRR5126149 | root | "mock,1_day" | 0.43 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 0.42 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 0.53 | MC |
| SRR5126153 | root | "mock,7_days" | 0.86 | MC |
| SRR5126155 | root | "mock,7_days" | 2.11 | MC |
| SRR5126157 | root | "mock,7_days" | 0.84 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 0.93 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 1.19 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 0.73 | MC |
| SRR5126165 | root | "mock,14_days" | 1.07 | MC |
| SRR5126167 | root | "mock,14_days" | 1.21 | MC |
| SRR5126169 | root | "mock,14_days" | 1.32 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 1.00 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 0.68 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 0.73 | MC |
| SRR3472897 | root | nontransgenic_rice_plant | 0.42 | MC |
| SRR3472900 | root | nontransgenic_rice_plant | 0.61 | MC |
| SRR1213694 | root | wt | 0.22 | MC |
| SRR4947482 | root | Al | 0.45 | MC |
| SRR4947487 | root | control | 0.59 | MC |
| SRR4947491 | root | Al | 0.65 | MC |
| SRR4947494 | root | control | 0.66 | MC |
| SRR4947497 | root | control | 0.63 | MC |
| SRR4947498 | root | Al | 0.55 | MC |
| SRR4947499 | root | Al | 0.55 | MC |
| SRR4947500 | root | Al | 0.67 | MC |
| SRR4947501 | root | Al | 0.48 | MC |
| SRR4947506 | root | Al | 1.38 | MC |
| SRR6502091 | root | 100 mM NaCl | 0.58 | MC |
| SRR6502092 | root | 100 mM NaCl | 1.39 | MC |
| SRR6502093 | root | 100 mM NaCl | 1.01 | MC |
| SRR6502094 | root | control | 0.85 | MC |
| SRR6502095 | root | control | 1.00 | MC |
| SRR6502096 | root | control | 0.41 | MC |
| SRR6502103 | root | 100 mM NaCl | 1.15 | MC |
| SRR6502104 | root | 100 mM NaCl | 1.78 | MC |
| SRR6502105 | root | 100 mM NaCl | 1.00 | MC |
| SRR6502106 | root | control | 1.15 | MC |
| SRR6502107 | root | control | 1.66 | MC |
| SRR6502108 | root | control | 0.63 | MC |
| SRR1740434 | root_differentiation_zone | wt | 0.81 | MC |
| SRR1740435 | root_differentiation_zone | wt | 0.42 | MC |
| SRR1740436 | root_differentiation_zone | wt | 1.12 | MC |
| SRR1740431 | root_elongation_zone | wt | 1.18 | MC |
| SRR1740432 | root_elongation_zone | wt | 0.69 | MC |
| SRR1740433 | root_elongation_zone | wt | 1.39 | MC |
| SRR1740428 | root_meristematic_zone | wt | 1.11 | MC |
| SRR1740429 | root_meristematic_zone | wt | 0.47 | MC |
| SRR1740430 | root_meristematic_zone | wt | 0.57 | MC |
| SRR3098742 | seedling | wt | 2.39 | MC |
| SRR2857719 | seedling | drought_stress_0h | 1.49 | MC |
| SRR2857721 | seedling | drought_stress_6h | 1.79 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 12.80 | MC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 2.69 | MC |
| SRR5052708 | shoot_apical_meristem | 0_days_after_shift | 2.42 | MC |
| SRR5052709 | shoot_apical_meristem | 0_days_after_shift | 2.92 | MC |
| SRR5052710 | shoot_apical_meristem | 0_days_after_shift | 2.70 | MC |
| SRR5052711 | shoot_apical_meristem | 4_days_after_shift | 3.30 | MC |
| SRR5052713 | shoot_apical_meristem | 4_days_after_shift | 3.60 | MC |
| SRR5052714 | shoot_apical_meristem | 4_days_after_shift | 1.76 | MC |
| SRR5052716 | shoot_apical_meristem | 8_days_after_shift | 3.97 | MC |
| SRR5052719 | shoot_apical_meristem | 8_days_after_shift | 2.96 | MC |
| SRR5052720 | shoot_apical_meristem | 8_days_after_shift | 3.27 | MC |
| SRR5052721 | shoot_apical_meristem | 12_days_after_shift | 1.36 | MC |
| SRR5052722 | shoot_apical_meristem | 12_days_after_shift | 3.51 | MC |
| SRR5052723 | shoot_apical_meristem | 12_days_after_shift | 3.54 | MC |
| SRR5052724 | shoot_apical_meristem | 0_days_after_shift | 2.83 | MC |
| SRR5052725 | shoot_apical_meristem | 0_days_after_shift | 2.34 | MC |
| SRR5052726 | shoot_apical_meristem | 0_days_after_shift | 2.78 | MC |
| SRR5052727 | shoot_apical_meristem | 4_days_after_shift | 2.79 | MC |
| SRR5052728 | shoot_apical_meristem | 4_days_after_shift | 3.08 | MC |
| SRR5052730 | shoot_apical_meristem | 4_days_after_shift | 2.41 | MC |
| SRR5052731 | shoot_apical_meristem | 8_days_after_shift | 2.04 | MC |
| SRR5052732 | shoot_apical_meristem | 8_days_after_shift | 2.79 | MC |
| SRR5052733 | shoot_apical_meristem | 8_days_after_shift | 3.22 | MC |
| SRR5052734 | shoot_apical_meristem | 12_days_after_shift | 2.49 | MC |
| SRR5052735 | shoot_apical_meristem | 12_days_after_shift | 2.74 | MC |
| SRR1617549 | shoot_apical_meristem | no collect | 6.54 | MC |
| SRR1617550 | shoot_apical_meristem | no collect | 7.69 | MC |
| SRR1617554 | shoot_apical_meristem | no collect | 6.76 | MC |
| SRR1617556 | shoot_apical_meristem | no collect | 6.32 | MC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 1.38 | MC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 1.35 | MC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 1.29 | MC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 3.46 | MC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 2.57 | MC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 2.84 | MC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 3.38 | MC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 2.70 | MC |
| SRR7760291 | spikelet | control condition (29C) for 7 hrs | 1.75 | MC |
| SRR7760292 | spikelet | control condition (29C) for 7 hrs | 3.21 | MC |
| SRR7760293 | spikelet | control condition (29C) for 7 hrs | 2.57 | MC |
| SRR7760295 | spikelet | high temperature treatment (38C) for 7 hrs | 1.67 | MC |
| SRR7760296 | spikelet | high temperature treatment (38C) for 7 hrs | 1.86 | MC |
| SRR7760298 | spikelet | control condition (29C) for 7 hrs | 1.41 | MC |
| SRR7760299 | spikelet | control condition (29C) for 7 hrs | 1.77 | MC |