| SRR4457263 | 2nd_leaf | DAH36 | 4.51 | MC |
| SRR4457265 | 2nd_leaf | DAH44 | 1.63 | MC |
| SRR4457266 | 2nd_leaf | DAH44 | 4.93 | MC |
| SRR3745126 | anther | wt | 1.26 | MC |
| SRR3745127 | anther | wt | 1.30 | MC |
| SRR5560727 | caryopsis | wild_type | 0.68 | MC |
| SRR5560728 | caryopsis | wild_type | 1.84 | MC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 0.43 | MC |
| SRR4947495 | root | control | 1.65 | MC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 0.63 | MC |
| SRR7265400 | coleoptile | 2dA | 1.51 | MC |
| SRR7265401 | coleoptile | 2dA | 1.83 | MC |
| SRR7265402 | coleoptile | 2dA | 2.18 | MC |
| SRR7265406 | coleoptile | 3dA | 1.04 | MC |
| SRR7265407 | coleoptile | 3dA | 1.06 | MC |
| SRR7265412 | coleoptile | 4dA | 1.23 | MC |
| SRR7265413 | coleoptile | 4dA | 4.67 | MC |
| SRR7265414 | coleoptile | 4dA | 3.18 | MC |
| SRR7265418 | coleoptile | 3dN1dA | 1.75 | MC |
| SRR7265419 | coleoptile | 3dN1dA | 1.06 | MC |
| SRR4104637 | crown | "Zn_deficiency,8_days_of_treatment" | 0.65 | MC |
| SRR4104643 | crown | "Zn_Efficient,8_days_of_treatment" | 0.47 | MC |
| SRR7265394 | embryo | 24hA | 2.34 | MC |
| SRR7265395 | embryo | 24hA | 0.94 | MC |
| SRR4457241 | flag_leaf | DAH28 | 2.07 | MC |
| SRR4457242 | flag_leaf | DAH28 | 3.69 | MC |
| SRR4457246 | flag_leaf | DAH44 | 2.91 | MC |
| SRR4457247 | flag_leaf | DAH44 | 4.89 | MC |
| SRR4457248 | flag_leaf | DAH44 | 0.88 | MC |
| SRR1213691 | flower | wt | 1.08 | MC |
| SRR8060835 | leaf | wild_type | 0.57 | MC |
| SRR8060836 | leaf | wild_type | 0.47 | MC |
| SRR8060837 | leaf | wild_type | 0.44 | MC |
| SRR8240825 | leaf | wild_type | 0.49 | MC |
| SRR8240826 | leaf | wild_type | 0.69 | MC |
| SRR8240820 | leaf | wild_type | 0.23 | MC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 1.66 | MC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 2.07 | MC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 1.38 | MC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 1.31 | MC |
| SRR2922622 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 2.33 | MC |
| SRR2922623 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 1.12 | MC |
| SRR2922624 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 1.62 | MC |
| SRR1952778 | leaf | 48_hrs_after_inoculation_with_BLS256 | 3.88 | MC |
| SRR1952779 | leaf | 48_hrs_after_inoculation_with_BLS256 | 4.64 | MC |
| SRR1952780 | leaf | 48_hrs_after_inoculation_with_BLS256 | 1.83 | MC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 1.69 | MC |
| SRR1952782 | leaf | 48_hrs_after_inoculation_with_BLS279 | 2.24 | MC |
| SRR1952783 | leaf | 48_hrs_after_inoculation_with_BLS279 | 3.70 | MC |
| SRR1952784 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 2.46 | MC |
| SRR1952786 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 3.61 | MC |
| SRR1952787 | leaf | 48_hrs_after_inoculation_with_B8_12 | 3.12 | MC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 1.45 | MC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 1.76 | MC |
| SRR1952790 | leaf | 48_hrs_after_inoculation_with_L8 | 1.36 | MC |
| SRR1952792 | leaf | 48_hrs_after_inoculation_with_L8 | 1.43 | MC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 3.25 | MC |
| SRR1952794 | leaf | 48_hrs_after_inoculation_with_RS105 | 2.94 | MC |
| SRR1952795 | leaf | 48_hrs_after_inoculation_with_RS105 | 1.63 | MC |
| SRR1952796 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 1.85 | MC |
| SRR1952800 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 3.89 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 3.48 | MC |
| SRR1952803 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 4.09 | MC |
| SRR1952804 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 2.81 | MC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 3.85 | MC |
| SRR1952807 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 3.45 | MC |
| SRR1952808 | leaf | 48_hrs_after_mock_inoculation | 2.51 | MC |
| SRR1952809 | leaf | 48_hrs_after_mock_inoculation | 5.09 | MC |
| SRR1952810 | leaf | 48_hrs_after_mock_inoculation | 4.75 | MC |
| SRR6417968 | leaf | H2O_control | 2.66 | MC |
| SRR6417969 | leaf | H2O_control | 1.64 | MC |
| SRR3209769 | leaf | Watered;Long_Day | 1.63 | MC |
| SRR3209770 | leaf | Watered;Long_Day | 0.95 | MC |
| SRR3209772 | leaf | Drought;Long_Day | 3.17 | MC |
| SRR3209774 | leaf | Watered;Short_Day | 1.93 | MC |
| SRR3209775 | leaf | Drought;Short_Day | 0.64 | MC |
| SRR3209777 | leaf | Watered;Long_Day | 1.54 | MC |
| SRR3209778 | leaf | Drought;Long_Day | 0.82 | MC |
| SRR3209779 | leaf | Watered;Short_Day | 0.80 | MC |
| SRR3209780 | leaf | Drought;Short_Day | 2.21 | MC |
| SRR8611900 | leaf | Non-inoculated | 0.54 | MC |
| SRR8611902 | leaf | Non-inoculated | 0.82 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 2.18 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 2.34 | MC |
| SRR1213693 | leaf | wt | 0.29 | MC |
| SRR6502087 | leaf | 100 mM NaCl | 1.26 | MC |
| SRR6502089 | leaf | control | 1.14 | MC |
| SRR6502100 | leaf | control | 3.92 | MC |
| SRR6502101 | leaf | control | 2.37 | MC |
| SRR6502102 | leaf | control | 2.46 | MC |
| SRR5856929 | leaf | control | 0.48 | MC |
| SRR5856930 | leaf | salt | 0.20 | MC |
| SRR5856931 | leaf | salt | 0.16 | MC |
| SRR5856932 | leaf | salt | 0.36 | MC |
| SRR5856935 | leaf | control | 0.42 | MC |
| SRR5856936 | leaf | salt | 0.21 | MC |
| SRR5856938 | leaf | salt | 0.87 | MC |
| SRR6053394 | leaf | ethanol solvent (untreated control) | 5.71 | MC |
| SRR6053395 | leaf | gibberellic acid (GA) | 7.61 | MC |
| SRR6053397 | leaf | gibberellic acid (GA) | 4.46 | MC |
| SRR6053398 | leaf | Paclobutrazol (PB) | 5.26 | MC |
| SRR6168981 | leaf | none (control) | 0.59 | MC |
| SRR6168984 | leaf | 0.5% Na2CO3 solution for 36h | 0.62 | MC |
| SRR8582891 | panicle | PM | 0.81 | MC |
| SRR8582893 | panicle | PM | 0.83 | MC |
| SRR5110429 | panicle | Dawn | 4.82 | MC |
| SRR5110432 | panicle | Dawn | 0.90 | MC |
| SRR4947496 | root | control | 4.25 | MC |
| SRR5110433 | panicle | Dawn + 3.5h | 2.81 | MC |
| SRR5110435 | panicle | Dawn + 3.5h | 0.81 | MC |
| SRR5110438 | panicle | Dawn + 7h | 2.45 | MC |
| SRR5110439 | panicle | Dawn + 7h | 1.74 | MC |
| SRR5110441 | panicle | Dawn + 10.5h | 1.64 | MC |
| SRR5110443 | panicle | Dawn + 10.5h | 0.94 | MC |
| SRR5110444 | panicle | Dawn + 10.5h | 1.23 | MC |
| SRR5110445 | panicle | Dusk | 3.20 | MC |
| SRR5110448 | panicle | Dusk | 1.16 | MC |
| SRR5110450 | panicle | Dawn + 14h | 2.35 | MC |
| SRR5110451 | panicle | Dawn + 14h | 1.67 | MC |
| SRR5110452 | panicle | Dawn + 14h | 2.80 | MC |
| SRR5110453 | panicle | Dawn + 17.5h | 0.36 | MC |
| SRR5110456 | panicle | Dawn + 17.5h | 1.62 | MC |
| SRR5110457 | panicle | Dawn + 21h | 1.69 | MC |
| SRR5110458 | panicle | Dawn + 21h | 2.68 | MC |
| SRR5110459 | panicle | Dawn + 21h | 3.60 | MC |
| SRR5278374 | pistil | "Balilla,S1" | 1.71 | MC |
| SRR5278375 | pistil | "Balilla,S1" | 2.04 | MC |
| SRR5278376 | pistil | "Balilla,S2" | 0.82 | MC |
| SRR5278377 | pistil | "Balilla,S2" | 1.58 | MC |
| SRR5278378 | pistil | "Balilla,S3" | 0.57 | MC |
| SRR5278379 | pistil | "Balilla,S3" | 1.88 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 0.45 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 0.57 | MC |
| SRR5126153 | root | "mock,7_days" | 1.39 | MC |
| SRR5126155 | root | "mock,7_days" | 0.50 | MC |
| SRR5126157 | root | "mock,7_days" | 2.27 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 0.41 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 0.63 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 0.77 | MC |
| SRR5126165 | root | "mock,14_days" | 2.90 | MC |
| SRR5126167 | root | "mock,14_days" | 0.28 | MC |
| SRR5126169 | root | "mock,14_days" | 0.79 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 1.78 | MC |
| SRR1213695 | root | wt | 1.73 | MC |
| SRR4947478 | root | control | 0.53 | MC |
| SRR4947479 | root | control | 1.57 | MC |
| SRR4947480 | root | control | 0.96 | MC |
| SRR4947481 | root | control | 1.51 | MC |
| SRR4947483 | root | Al | 1.33 | MC |
| SRR4947485 | root | Al | 0.62 | MC |
| SRR4947487 | root | control | 1.22 | MC |
| SRR4947488 | root | control | 1.46 | MC |
| SRR4947490 | root | Al | 0.74 | MC |
| SRR4947493 | root | Al | 0.73 | MC |
| SRR4947494 | root | control | 0.54 | MC |
| SRR4947497 | root | control | 1.00 | MC |
| SRR4947498 | root | Al | 1.33 | MC |
| SRR4947504 | root | control | 3.20 | MC |
| SRR4947505 | root | control | 1.01 | MC |
| SRR4947508 | root | Al | 1.20 | MC |
| SRR6502096 | root | control | 0.91 | MC |
| SRR6502104 | root | 100 mM NaCl | 0.94 | MC |
| SRR6502107 | root | control | 0.97 | MC |
| SRR6502108 | root | control | 0.60 | MC |
| SRR6441554 | seedling | wild_type | 0.49 | MC |
| SRR6441555 | seedling | wild_type | 0.87 | MC |
| SRR2154082 | seedling | wt | 2.12 | MC |
| SRR2154083 | seedling | wt | 3.13 | MC |
| SRR3098741 | seedling | wt | 0.91 | MC |
| SRR3098742 | seedling | wt | 0.31 | MC |
| SRR3098743 | seedling | wt | 0.99 | MC |
| SRR2857719 | seedling | drought_stress_0h | 2.02 | MC |
| SRR2857720 | seedling | drought_stress_1h | 1.16 | MC |
| SRR2857721 | seedling | drought_stress_6h | 1.64 | MC |
| SRR358791 | seedling | wt | 6.18 | MC |
| SRR358793 | seedling | wt | 2.16 | MC |
| SRR358794 | seedling | wt | 3.13 | MC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 2.88 | MC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 7.60 | MC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 4.39 | MC |
| SRR3950244 | shoot | Drought_during_3_days;Fr13_inoculated | 0.93 | MC |
| SRR3950245 | shoot | Drought_during_3_days;Fr13_inoculated | 0.54 | MC |
| SRR3950247 | shoot | No_DIS;Fr13_inoculated | 2.07 | MC |
| SRR3950248 | shoot | No_DIS;Fr13_inoculated | 2.69 | MC |
| SRR3950249 | shoot | No_DIS;Fr13_inoculated | 2.75 | MC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 2.49 | MC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 2.47 | MC |
| SRR5796943 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 3.08 | MC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 1.12 | MC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 1.69 | MC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 1.16 | MC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 1.32 | MC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 2.29 | MC |
| SRR5796954 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 1.66 | MC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 0.79 | MC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 1.13 | MC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 0.33 | MC |
| SRR5796958 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 0.72 | MC |
| SRR5796959 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 0.85 | MC |
| SRR7760292 | spikelet | control condition (29C) for 7 hrs | 0.72 | MC |
| SRR7760294 | spikelet | high temperature treatment (38C) for 7 hrs | 0.60 | MC |
| SRR7760295 | spikelet | high temperature treatment (38C) for 7 hrs | 0.82 | MC |
| SRR7760296 | spikelet | high temperature treatment (38C) for 7 hrs | 1.15 | MC |
| SRR7760300 | spikelet | high temperature treatment (38C) for 7 hrs | 0.75 | MC |
| SRR7760301 | spikelet | high temperature treatment (38C) for 7 hrs | 0.85 | MC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 0.59 | MC |