| SRR358795 | callus | wt | 4.61 | MC |
| SRR358796 | callus | wt | 4.90 | MC |
| SRR358797 | callus | wt | 5.99 | MC |
| SRR358798 | callus | wt | 4.69 | MC |
| SRR6320473 | carpel | wt | 4.31 | MC |
| SRR6320498 | carpel | wt | 6.14 | MC |
| SRR5560727 | caryopsis | wild_type | 2.40 | MC |
| SRR5560729 | caryopsis | wild_type | 4.41 | MC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 1.78 | MC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 2.17 | MC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 0.52 | MC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 1.48 | MC |
| SRR7265403 | coleoptile | 2dN | 1.58 | MC |
| SRR7265404 | coleoptile | 2dN | 1.86 | MC |
| SRR7265405 | coleoptile | 2dN | 1.62 | MC |
| SRR7265406 | coleoptile | 3dA | 3.52 | MC |
| SRR7265409 | coleoptile | 3dN | 2.49 | MC |
| SRR7265410 | coleoptile | 3dN | 1.22 | MC |
| SRR7265411 | coleoptile | 3dN | 1.73 | MC |
| SRR7265415 | coleoptile | 4dN | 2.53 | MC |
| SRR7265416 | coleoptile | 4dN | 2.50 | MC |
| SRR7265417 | coleoptile | 4dN | 2.79 | MC |
| SRR7265419 | coleoptile | 3dN1dA | 4.13 | MC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 2.30 | MC |
| SRR4104640 | crown | "Zn_deficiency,8_days_of_treatment" | 2.93 | MC |
| SRR4104644 | crown | "Zn_Efficient,8_days_of_treatment" | 1.72 | MC |
| SRR7265373 | embryo | dry seed 0 h | 0.61 | MC |
| SRR7265374 | embryo | dry seed 0 h | 0.61 | MC |
| SRR7265375 | embryo | dry seed 0 h | 0.28 | MC |
| SRR7265376 | embryo | 1hA | 1.77 | MC |
| SRR7265377 | embryo | 1hA | 1.48 | MC |
| SRR7265378 | embryo | 1hA | 1.96 | MC |
| SRR7265379 | embryo | 1hN | 0.91 | MC |
| SRR7265380 | embryo | 1hN | 1.14 | MC |
| SRR7265381 | embryo | 1hN | 0.77 | MC |
| SRR7265382 | embryo | 3hA | 3.40 | MC |
| SRR7265383 | embryo | 3hA | 3.67 | MC |
| SRR7265384 | embryo | 3hA | 4.02 | MC |
| SRR7265385 | embryo | 3hN | 1.62 | MC |
| SRR7265386 | embryo | 3hN | 1.24 | MC |
| SRR7265387 | embryo | 3hN | 1.43 | MC |
| SRR7265388 | embryo | 12hA | 2.68 | MC |
| SRR7265389 | embryo | 12hA | 1.66 | MC |
| SRR7265390 | embryo | 12hA | 2.50 | MC |
| SRR7265391 | embryo | 12hN | 1.53 | MC |
| SRR7265392 | embryo | 12hN | 1.82 | MC |
| SRR7265393 | embryo | 12hN | 1.55 | MC |
| SRR7265394 | embryo | 24hA | 4.00 | MC |
| SRR7265395 | embryo | 24hA | 2.71 | MC |
| SRR7265396 | embryo | 24hA | 3.54 | MC |
| SRR7265397 | embryo | 24hN | 1.74 | MC |
| SRR7265398 | embryo | 24hN | 1.37 | MC |
| SRR7265399 | embryo | 24hN | 1.26 | MC |
| SRR2338868 | endosprem | high_temperature | 1.98 | MC |
| SRR2338869 | endosprem | high_temperature | 1.59 | MC |
| SRR976168 | flag_leaf | wild_type | 1.10 | MC |
| SRR1213690 | flower | wt(flower buds) | 2.15 | MC |
| SRR1213691 | flower | wt | 0.88 | MC |
| SRR8240824 | leaf | wild_type | 1.28 | MC |
| SRR8240825 | leaf | wild_type | 1.11 | MC |
| SRR8240826 | leaf | wild_type | 1.35 | MC |
| SRR8240818 | leaf | wild_type | 0.64 | MC |
| SRR8240819 | leaf | wild_type | 1.66 | MC |
| SRR2922622 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 2.19 | MC |
| SRR2922624 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 5.13 | MC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 3.12 | MC |
| SRR1952782 | leaf | 48_hrs_after_inoculation_with_BLS279 | 5.72 | MC |
| SRR1952784 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 2.55 | MC |
| SRR1952785 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 4.73 | MC |
| SRR1952790 | leaf | 48_hrs_after_inoculation_with_L8 | 1.58 | MC |
| SRR1952792 | leaf | 48_hrs_after_inoculation_with_L8 | 4.44 | MC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 2.99 | MC |
| SRR1952796 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 4.93 | MC |
| SRR1952799 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 5.95 | MC |
| SRR1952809 | leaf | 48_hrs_after_mock_inoculation | 2.30 | MC |
| SRR1952810 | leaf | 48_hrs_after_mock_inoculation | 1.01 | MC |
| SRR1761788 | leaf | "wild_type,drought,2" | 3.02 | MC |
| SRR1761790 | leaf | "wild_type,control,2" | 1.63 | MC |
| SRR1761791 | leaf | "wild_type,control,2" | 1.23 | MC |
| SRR1761780 | leaf | "wild_type,drought,1" | 3.02 | MC |
| SRR1761782 | leaf | "wild_type,control,1" | 1.63 | MC |
| SRR1761783 | leaf | "wild_type,control,1" | 1.23 | MC |
| SRR1761528 | leaf | drought | 3.02 | MC |
| SRR1761530 | leaf | control | 1.63 | MC |
| SRR1761531 | leaf | control | 1.23 | MC |
| SRR6417964 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 3.05 | MC |
| SRR6417965 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 2.75 | MC |
| SRR6417966 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 1.23 | MC |
| SRR6417967 | leaf | H2O_control | 0.78 | MC |
| SRR6417968 | leaf | H2O_control | 1.74 | MC |
| SRR6417969 | leaf | H2O_control | 0.96 | MC |
| SRR3209769 | leaf | Watered;Long_Day | 2.44 | MC |
| SRR3209770 | leaf | Watered;Long_Day | 2.11 | MC |
| SRR3209773 | leaf | Watered;Short_Day | 2.93 | MC |
| SRR3209775 | leaf | Drought;Short_Day | 2.69 | MC |
| SRR3209776 | leaf | Drought;Short_Day | 3.72 | MC |
| SRR3209777 | leaf | Watered;Long_Day | 3.24 | MC |
| SRR3209779 | leaf | Watered;Short_Day | 1.52 | MC |
| SRR8611900 | leaf | Non-inoculated | 2.49 | MC |
| SRR8611901 | leaf | Non-inoculated | 2.74 | MC |
| SRR8611902 | leaf | Non-inoculated | 1.93 | MC |
| SRR5856930 | leaf | salt | 1.76 | MC |
| SRR5856931 | leaf | salt | 1.45 | MC |
| SRR5856936 | leaf | salt | 1.72 | MC |
| SRR5856937 | leaf | salt | 1.80 | MC |
| SRR6053393 | leaf | ethanol solvent (untreated control) | 2.87 | MC |
| SRR6053398 | leaf | Paclobutrazol (PB) | 1.82 | MC |
| SRR6053399 | leaf | Paclobutrazol (PB) | 1.14 | MC |
| SRR6168973 | leaf | none (control) | 0.97 | MC |
| SRR6168974 | leaf | none (control) | 0.66 | MC |
| SRR6168975 | leaf | none (control) | 0.33 | MC |
| SRR6168976 | leaf | 0.5% Na2CO3 solution for 36h | 1.78 | MC |
| SRR6168977 | leaf | 0.5% Na2CO3 solution for 36h | 2.05 | MC |
| SRR6168978 | leaf | 0.5% Na2CO3 solution for 36h | 1.70 | MC |
| SRR8582891 | panicle | PM | 2.69 | MC |
| SRR8582892 | panicle | PM | 3.81 | MC |
| SRR8582893 | panicle | PM | 2.57 | MC |
| SRR1213697 | endosprem | wt(mature seeds) | 0.79 | MC |
| SRR1633182 | panicle | WT | 0.29 | MC |
| SRR5278374 | pistil | "Balilla,S1" | 1.33 | MC |
| SRR5278375 | pistil | "Balilla,S1" | 1.36 | MC |
| SRR5278376 | pistil | "Balilla,S2" | 0.69 | MC |
| SRR5278377 | pistil | "Balilla,S2" | 1.03 | MC |
| SRR5278378 | pistil | "Balilla,S3" | 1.33 | MC |
| SRR5278379 | pistil | "Balilla,S3" | 0.92 | MC |
| SRR3472897 | root | nontransgenic_rice_plant | 1.87 | MC |
| SRR1740434 | root_differentiation_zone | wt | 1.18 | MC |
| SRR1740435 | root_differentiation_zone | wt | 0.32 | MC |
| SRR1740436 | root_differentiation_zone | wt | 2.18 | MC |
| SRR1740431 | root_elongation_zone | wt | 2.21 | MC |
| SRR1740432 | root_elongation_zone | wt | 1.27 | MC |
| SRR1740433 | root_elongation_zone | wt | 2.01 | MC |
| SRR1740430 | root_meristematic_zone | wt | 1.76 | MC |
| SRR6441554 | seedling | wild_type | 2.05 | MC |
| SRR6441555 | seedling | wild_type | 2.15 | MC |
| SRR3098742 | seedling | wt | 2.30 | MC |
| SRR1944583 | seedling | no_treatment | 1.83 | MC |
| SRR358794 | seedling | wt | 4.55 | MC |
| SRR1288363 | shoot | "none,3_days_post_infection" | 3.48 | MC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 7.49 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 7.14 | MC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 8.47 | MC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 8.06 | MC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 4.95 | MC |
| SRR4841741 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 3.12 | MC |
| SRR4841743 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 6.50 | MC |
| SRR3950244 | shoot | Drought_during_3_days;Fr13_inoculated | 2.91 | MC |
| SRR3950246 | shoot | Drought_during_3_days;Fr13_inoculated | 2.83 | MC |
| SRR3950250 | shoot | Drought_during_3_days;_mock_inoculated | 3.80 | MC |
| SRR3950253 | shoot | No_DIS;_mock_inoculated | 2.75 | MC |
| SRR3950255 | shoot | No_DIS;_mock_inoculated | 4.05 | MC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 1.10 | MC |
| SRR5796941 | shoot | "Control,22C for 10 min" | 0.90 | MC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 1.81 | MC |
| SRR5796943 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 1.78 | MC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 0.40 | MC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 1.01 | MC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 0.68 | MC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 1.18 | MC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 3.02 | MC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 2.54 | MC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 1.75 | MC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 1.40 | MC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 1.25 | MC |
| SRR5796958 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 1.66 | MC |
| SRR5796959 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 1.54 | MC |
| SRR5052708 | shoot_apical_meristem | 0_days_after_shift | 1.88 | MC |
| SRR5052709 | shoot_apical_meristem | 0_days_after_shift | 3.41 | MC |
| SRR5052710 | shoot_apical_meristem | 0_days_after_shift | 2.95 | MC |
| SRR5052713 | shoot_apical_meristem | 4_days_after_shift | 6.23 | MC |
| SRR5052714 | shoot_apical_meristem | 4_days_after_shift | 2.40 | MC |
| SRR5052716 | shoot_apical_meristem | 8_days_after_shift | 0.95 | MC |
| SRR5052719 | shoot_apical_meristem | 8_days_after_shift | 2.92 | MC |
| SRR5052720 | shoot_apical_meristem | 8_days_after_shift | 1.44 | MC |
| SRR5052721 | shoot_apical_meristem | 12_days_after_shift | 1.06 | MC |
| SRR5052722 | shoot_apical_meristem | 12_days_after_shift | 2.51 | MC |
| SRR5052723 | shoot_apical_meristem | 12_days_after_shift | 0.99 | MC |
| SRR5052724 | shoot_apical_meristem | 0_days_after_shift | 2.81 | MC |
| SRR5052725 | shoot_apical_meristem | 0_days_after_shift | 0.86 | MC |
| SRR5052726 | shoot_apical_meristem | 0_days_after_shift | 1.48 | MC |
| SRR5052727 | shoot_apical_meristem | 4_days_after_shift | 1.02 | MC |
| SRR5052728 | shoot_apical_meristem | 4_days_after_shift | 1.01 | MC |
| SRR5052730 | shoot_apical_meristem | 4_days_after_shift | 2.51 | MC |
| SRR5052731 | shoot_apical_meristem | 8_days_after_shift | 1.21 | MC |
| SRR5052732 | shoot_apical_meristem | 8_days_after_shift | 1.40 | MC |
| SRR5052734 | shoot_apical_meristem | 12_days_after_shift | 3.48 | MC |
| SRR5052735 | shoot_apical_meristem | 12_days_after_shift | 1.89 | MC |
| SRR1617549 | shoot_apical_meristem | no collect | 2.79 | MC |
| SRR1617550 | shoot_apical_meristem | no collect | 5.62 | MC |
| SRR1617553 | shoot_apical_meristem | no collect | 2.12 | MC |
| SRR1617554 | shoot_apical_meristem | no collect | 4.28 | MC |
| SRR1617556 | shoot_apical_meristem | no collect | 3.70 | MC |
| SRR1617557 | shoot_apical_meristem | no collect | 1.61 | MC |
| SRR1617558 | shoot_apical_meristem | no collect | 2.66 | MC |
| SRR1617559 | shoot_apical_meristem | no collect | 1.32 | MC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 0.65 | MC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 0.63 | MC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 0.35 | MC |