| SRR4457249 | 2nd_leaf | DAH4 | 2.06 | MC |
| SRR4457250 | 2nd_leaf | DAH4 | 1.62 | MC |
| SRR4457251 | 2nd_leaf | DAH4 | 1.26 | MC |
| SRR4457252 | 2nd_leaf | DAH12 | 2.60 | MC |
| SRR4457253 | 2nd_leaf | DAH12 | 1.18 | MC |
| SRR4457254 | 2nd_leaf | DAH12 | 1.67 | MC |
| SRR4457255 | 2nd_leaf | DAH20 | 1.65 | MC |
| SRR4457256 | 2nd_leaf | DAH20 | 2.06 | MC |
| SRR4457257 | 2nd_leaf | DAH20 | 2.34 | MC |
| SRR4457258 | 2nd_leaf | DAH28 | 3.32 | MC |
| SRR4457259 | 2nd_leaf | DAH28 | 1.76 | MC |
| SRR4457260 | 2nd_leaf | DAH28 | 1.24 | MC |
| SRR4457261 | 2nd_leaf | DAH36 | 1.45 | MC |
| SRR4457262 | 2nd_leaf | DAH36 | 1.32 | MC |
| SRR4457263 | 2nd_leaf | DAH36 | 0.63 | MC |
| SRR4457264 | 2nd_leaf | DAH44 | 1.43 | MC |
| SRR4457265 | 2nd_leaf | DAH44 | 0.66 | MC |
| SRR4457266 | 2nd_leaf | DAH44 | 1.34 | MC |
| SRR3745126 | anther | wt | 0.79 | MC |
| SRR3745127 | anther | wt | 0.73 | MC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 0.39 | MC |
| SRR7265414 | coleoptile | 4dA | 4.20 | MC |
| SRR7265420 | coleoptile | 3dN1dA | 3.88 | MC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 0.39 | MC |
| SRR976168 | flag_leaf | wild_type | 0.45 | MC |
| SRR4457231 | flag_leaf | DAH4 | 0.86 | MC |
| SRR4457232 | flag_leaf | DAH4 | 1.09 | MC |
| SRR4457233 | flag_leaf | DAH4 | 1.31 | MC |
| SRR4457234 | flag_leaf | DAH12 | 1.30 | MC |
| SRR4457235 | flag_leaf | DAH12 | 1.75 | MC |
| SRR4457236 | flag_leaf | DAH12 | 1.76 | MC |
| SRR4457237 | flag_leaf | DAH20 | 2.84 | MC |
| SRR4457238 | flag_leaf | DAH20 | 3.51 | MC |
| SRR4457239 | flag_leaf | DAH20 | 3.16 | MC |
| SRR4457240 | flag_leaf | DAH28 | 4.29 | MC |
| SRR4457241 | flag_leaf | DAH28 | 3.43 | MC |
| SRR4457242 | flag_leaf | DAH28 | 2.63 | MC |
| SRR4457243 | flag_leaf | DAH36 | 1.29 | MC |
| SRR4457244 | flag_leaf | DAH36 | 1.68 | MC |
| SRR4457245 | flag_leaf | DAH36 | 1.73 | MC |
| SRR4457246 | flag_leaf | DAH44 | 3.00 | MC |
| SRR4457247 | flag_leaf | DAH44 | 1.50 | MC |
| SRR4457248 | flag_leaf | DAH44 | 1.46 | MC |
| SRR1213690 | flower | wt(flower buds) | 3.21 | MC |
| SRR1213691 | flower | wt | 3.54 | MC |
| SRR8060836 | leaf | wild_type | 0.25 | MC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 0.47 | MC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 0.66 | MC |
| SRR2922623 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 5.58 | MC |
| SRR1952782 | leaf | 48_hrs_after_inoculation_with_BLS279 | 6.32 | MC |
| SRR1952785 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 3.69 | MC |
| SRR1952790 | leaf | 48_hrs_after_inoculation_with_L8 | 4.48 | MC |
| SRR1952794 | leaf | 48_hrs_after_inoculation_with_RS105 | 4.06 | MC |
| SRR1952796 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 5.72 | MC |
| SRR1952798 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 8.51 | MC |
| SRR1952799 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 6.30 | MC |
| SRR1952800 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 5.01 | MC |
| SRR1952809 | leaf | 48_hrs_after_mock_inoculation | 3.99 | MC |
| SRR1761788 | leaf | "wild_type,drought,2" | 2.60 | MC |
| SRR1761789 | leaf | "wild_type,drought,2" | 3.24 | MC |
| SRR1761790 | leaf | "wild_type,control,2" | 3.92 | MC |
| SRR1761791 | leaf | "wild_type,control,2" | 3.47 | MC |
| SRR1761780 | leaf | "wild_type,drought,1" | 2.33 | MC |
| SRR1761781 | leaf | "wild_type,drought,1" | 3.19 | MC |
| SRR1761782 | leaf | "wild_type,control,1" | 4.11 | MC |
| SRR1761783 | leaf | "wild_type,control,1" | 3.60 | MC |
| SRR1761528 | leaf | drought | 2.46 | MC |
| SRR1761529 | leaf | drought | 3.30 | MC |
| SRR1761530 | leaf | control | 3.98 | MC |
| SRR1761531 | leaf | control | 3.60 | MC |
| SRR6417964 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 0.89 | MC |
| SRR6417965 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 0.84 | MC |
| SRR6417966 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 1.93 | MC |
| SRR6417967 | leaf | H2O_control | 0.80 | MC |
| SRR6417968 | leaf | H2O_control | 0.49 | MC |
| SRR6417969 | leaf | H2O_control | 0.88 | MC |
| SRR3209769 | leaf | Watered;Long_Day | 2.91 | MC |
| SRR3209770 | leaf | Watered;Long_Day | 3.14 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 3.25 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 3.18 | MC |
| SRR1213693 | leaf | wt | 3.12 | MC |
| SRR6502085 | leaf | 100 mM NaCl | 2.69 | MC |
| SRR6502086 | leaf | 100 mM NaCl | 2.98 | MC |
| SRR6502087 | leaf | 100 mM NaCl | 2.88 | MC |
| SRR6502088 | leaf | control | 2.90 | MC |
| SRR6502089 | leaf | control | 1.20 | MC |
| SRR6502090 | leaf | control | 2.42 | MC |
| SRR6502097 | leaf | 100 mM NaCl | 2.77 | MC |
| SRR6502098 | leaf | 100 mM NaCl | 2.66 | MC |
| SRR6502099 | leaf | 100 mM NaCl | 0.35 | MC |
| SRR6502100 | leaf | control | 1.08 | MC |
| SRR6502101 | leaf | control | 2.20 | MC |
| SRR6502102 | leaf | control | 1.99 | MC |
| SRR8582888 | panicle | AM | 0.69 | MC |
| SRR8582889 | panicle | AM | 0.11 | MC |
| SRR8582890 | panicle | AM | 0.36 | MC |
| SRR8582891 | panicle | PM | 1.02 | MC |
| SRR8582892 | panicle | PM | 1.79 | MC |
| SRR8582893 | panicle | PM | 1.13 | MC |
| SRR4947496 | root | control | 3.67 | MC |
| SRR5110442 | panicle | Dawn + 10.5h | 0.49 | MC |
| SRR5110446 | panicle | Dusk | 0.68 | MC |
| SRR5110447 | panicle | Dusk | 0.38 | MC |
| SRR5110454 | panicle | Dawn + 17.5h | 0.36 | MC |
| SRR5110460 | panicle | Dawn + 21h | 0.77 | MC |
| SRR1213697 | endosprem | wt(mature seeds) | 1.75 | MC |
| SRR5278374 | pistil | "Balilla,S1" | 1.89 | MC |
| SRR5278375 | pistil | "Balilla,S1" | 1.68 | MC |
| SRR5278376 | pistil | "Balilla,S2" | 2.13 | MC |
| SRR5278377 | pistil | "Balilla,S2" | 2.18 | MC |
| SRR5278378 | pistil | "Balilla,S3" | 6.09 | MC |
| SRR5278379 | pistil | "Balilla,S3" | 5.20 | MC |
| SRR5126147 | root | "mock,1_day" | 1.51 | MC |
| SRR5126148 | root | "mock,1_day" | 1.32 | MC |
| SRR5126149 | root | "mock,1_day" | 2.54 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 2.04 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 1.89 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 0.99 | MC |
| SRR5126153 | root | "mock,7_days" | 2.43 | MC |
| SRR5126155 | root | "mock,7_days" | 3.48 | MC |
| SRR5126157 | root | "mock,7_days" | 4.21 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 4.45 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 4.88 | MC |
| SRR5126167 | root | "mock,14_days" | 2.94 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 3.42 | MC |
| SRR3472897 | root | nontransgenic_rice_plant | 0.77 | MC |
| SRR3472900 | root | nontransgenic_rice_plant | 1.36 | MC |
| SRR4947484 | root | Al | 4.11 | MC |
| SRR4947485 | root | Al | 4.67 | MC |
| SRR4947489 | root | control | 4.93 | MC |
| SRR4947497 | root | control | 3.37 | MC |
| SRR6502092 | root | 100 mM NaCl | 4.55 | MC |
| SRR6502095 | root | control | 4.41 | MC |
| SRR6502103 | root | 100 mM NaCl | 5.24 | MC |
| SRR1740434 | root_differentiation_zone | wt | 1.83 | MC |
| SRR1740435 | root_differentiation_zone | wt | 1.86 | MC |
| SRR1740436 | root_differentiation_zone | wt | 2.46 | MC |
| SRR1740431 | root_elongation_zone | wt | 2.28 | MC |
| SRR1740432 | root_elongation_zone | wt | 3.49 | MC |
| SRR1740428 | root_meristematic_zone | wt | 3.27 | MC |
| SRR6441554 | seedling | wild_type | 0.24 | MC |
| SRR6441555 | seedling | wild_type | 0.40 | MC |
| SRR2154086 | seedling | wt | 1.52 | MC |
| SRR2154085 | seedling | wt | 1.01 | MC |
| SRR2154087 | seedling | wt | 0.86 | MC |
| SRR1944583 | seedling | no_treatment | 2.76 | MC |
| SRR358791 | seedling | wt | 7.09 | MC |
| SRR358792 | seedling | wt | 7.29 | MC |
| SRR358793 | seedling | wt | 0.67 | MC |
| SRR358794 | seedling | wt | 0.83 | MC |
| SRR1288363 | shoot | "none,3_days_post_infection" | 1.59 | MC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 3.50 | MC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 7.96 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 7.94 | MC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 8.54 | MC |
| SRR4841741 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 2.55 | MC |
| SRR4841743 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 5.83 | MC |
| SRR3950244 | shoot | Drought_during_3_days;Fr13_inoculated | 1.31 | MC |
| SRR3950245 | shoot | Drought_during_3_days;Fr13_inoculated | 1.65 | MC |
| SRR3950246 | shoot | Drought_during_3_days;Fr13_inoculated | 2.11 | MC |
| SRR3950247 | shoot | No_DIS;Fr13_inoculated | 1.35 | MC |
| SRR3950248 | shoot | No_DIS;Fr13_inoculated | 2.05 | MC |
| SRR3950249 | shoot | No_DIS;Fr13_inoculated | 1.05 | MC |
| SRR3950250 | shoot | Drought_during_3_days;_mock_inoculated | 0.78 | MC |
| SRR3950251 | shoot | Drought_during_3_days;_mock_inoculated | 1.12 | MC |
| SRR3950252 | shoot | Drought_during_3_days;_mock_inoculated | 0.80 | MC |
| SRR3950253 | shoot | No_DIS;_mock_inoculated | 1.04 | MC |
| SRR3950254 | shoot | No_DIS;_mock_inoculated | 1.33 | MC |
| SRR3950255 | shoot | No_DIS;_mock_inoculated | 2.09 | MC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 1.41 | MC |
| SRR5796941 | shoot | "Control,22C for 10 min" | 1.15 | MC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 1.54 | MC |
| SRR5796943 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 2.29 | MC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 1.44 | MC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 2.37 | MC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 1.98 | MC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 2.15 | MC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 1.88 | MC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 2.98 | MC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 1.81 | MC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 1.34 | MC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 0.88 | MC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 2.07 | MC |
| SRR5796954 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 0.96 | MC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 0.75 | MC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 1.02 | MC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 1.36 | MC |
| SRR5796958 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 2.62 | MC |
| SRR5796959 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 2.04 | MC |
| SRR5052708 | shoot_apical_meristem | 0_days_after_shift | 7.17 | MC |
| SRR5052709 | shoot_apical_meristem | 0_days_after_shift | 7.31 | MC |
| SRR5052710 | shoot_apical_meristem | 0_days_after_shift | 7.28 | MC |
| SRR5052714 | shoot_apical_meristem | 4_days_after_shift | 4.43 | MC |
| SRR5052716 | shoot_apical_meristem | 8_days_after_shift | 6.41 | MC |
| SRR5052719 | shoot_apical_meristem | 8_days_after_shift | 6.18 | MC |
| SRR5052720 | shoot_apical_meristem | 8_days_after_shift | 4.68 | MC |
| SRR5052721 | shoot_apical_meristem | 12_days_after_shift | 3.27 | MC |
| SRR5052722 | shoot_apical_meristem | 12_days_after_shift | 5.71 | MC |
| SRR5052723 | shoot_apical_meristem | 12_days_after_shift | 4.89 | MC |
| SRR5052724 | shoot_apical_meristem | 0_days_after_shift | 6.17 | MC |
| SRR5052725 | shoot_apical_meristem | 0_days_after_shift | 3.05 | MC |
| SRR5052726 | shoot_apical_meristem | 0_days_after_shift | 6.46 | MC |
| SRR5052727 | shoot_apical_meristem | 4_days_after_shift | 4.28 | MC |
| SRR5052728 | shoot_apical_meristem | 4_days_after_shift | 7.24 | MC |
| SRR5052730 | shoot_apical_meristem | 4_days_after_shift | 5.69 | MC |
| SRR5052731 | shoot_apical_meristem | 8_days_after_shift | 4.81 | MC |
| SRR5052732 | shoot_apical_meristem | 8_days_after_shift | 6.87 | MC |
| SRR5052733 | shoot_apical_meristem | 8_days_after_shift | 4.69 | MC |
| SRR5052734 | shoot_apical_meristem | 12_days_after_shift | 7.07 | MC |
| SRR5052735 | shoot_apical_meristem | 12_days_after_shift | 3.54 | MC |
| SRR1617549 | shoot_apical_meristem | no collect | 5.38 | MC |
| SRR1617550 | shoot_apical_meristem | no collect | 3.61 | MC |
| SRR1617553 | shoot_apical_meristem | no collect | 4.81 | MC |
| SRR1617556 | shoot_apical_meristem | no collect | 2.76 | MC |
| SRR1617557 | shoot_apical_meristem | no collect | 3.49 | MC |
| SRR1617558 | shoot_apical_meristem | no collect | 5.11 | MC |
| SRR1617559 | shoot_apical_meristem | no collect | 5.11 | MC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 0.53 | MC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 1.52 | MC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 0.28 | MC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 2.20 | MC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 1.41 | MC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 2.97 | MC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 1.88 | MC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 1.13 | MC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 0.81 | MC |
| SRR7760297 | spikelet | control condition (29C) for 7 hrs | 1.07 | MC |
| SRR7760298 | spikelet | control condition (29C) for 7 hrs | 0.48 | MC |
| SRR7760300 | spikelet | high temperature treatment (38C) for 7 hrs | 0.27 | MC |
| SRR7760301 | spikelet | high temperature treatment (38C) for 7 hrs | 0.92 | MC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 0.52 | MC |