| SRR4457256 | 2nd_leaf | DAH20 | 1.11 | MC |
| SRR5560728 | caryopsis | wild_type | 0.32 | MC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 3.63 | MC |
| SRR7265379 | embryo | 1hN | 0.69 | MC |
| SRR7265383 | embryo | 3hA | 2.68 | MC |
| SRR7265384 | embryo | 3hA | 3.53 | MC |
| SRR7265386 | embryo | 3hN | 0.56 | MC |
| SRR2338868 | endosprem | high_temperature | 0.85 | MC |
| SRR4457231 | flag_leaf | DAH4 | 1.17 | MC |
| SRR4457236 | flag_leaf | DAH12 | 0.55 | MC |
| SRR4457237 | flag_leaf | DAH20 | 0.21 | MC |
| SRR8240824 | leaf | wild_type | 0.42 | MC |
| SRR8240826 | leaf | wild_type | 0.34 | MC |
| SRR8240819 | leaf | wild_type | 1.30 | MC |
| SRR8240820 | leaf | wild_type | 2.24 | MC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 3.86 | MC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 1.53 | MC |
| SRR2922624 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 1.37 | MC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 1.84 | MC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 1.51 | MC |
| SRR1952790 | leaf | 48_hrs_after_inoculation_with_L8 | 3.64 | MC |
| SRR1952794 | leaf | 48_hrs_after_inoculation_with_RS105 | 1.52 | MC |
| SRR1952795 | leaf | 48_hrs_after_inoculation_with_RS105 | 1.37 | MC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 1.44 | MC |
| SRR1952804 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 0.55 | MC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 2.54 | MC |
| SRR1952810 | leaf | 48_hrs_after_mock_inoculation | 1.51 | MC |
| SRR1761791 | leaf | "wild_type,control,2" | 0.90 | MC |
| SRR1761783 | leaf | "wild_type,control,1" | 0.90 | MC |
| SRR1761531 | leaf | control | 0.90 | MC |
| SRR504365 | leaf | wt | 1.55 | MC |
| SRR6417966 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 1.87 | MC |
| SRR6417968 | leaf | H2O_control | 1.40 | MC |
| SRR6417969 | leaf | H2O_control | 1.04 | MC |
| SRR3209769 | leaf | Watered;Long_Day | 0.26 | MC |
| SRR3209770 | leaf | Watered;Long_Day | 3.05 | MC |
| SRR3209771 | leaf | Drought;Long_Day | 3.17 | MC |
| SRR3209775 | leaf | Drought;Short_Day | 4.15 | MC |
| SRR3209776 | leaf | Drought;Short_Day | 0.47 | MC |
| SRR3209777 | leaf | Watered;Long_Day | 0.50 | MC |
| SRR3209780 | leaf | Drought;Short_Day | 3.65 | MC |
| SRR8611901 | leaf | Non-inoculated | 3.33 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 2.56 | MC |
| SRR6502088 | leaf | control | 0.35 | MC |
| SRR6502101 | leaf | control | 2.44 | MC |
| SRR6502102 | leaf | control | 1.19 | MC |
| SRR5856927 | leaf | control | 1.44 | MC |
| SRR5856929 | leaf | control | 1.61 | MC |
| SRR5856931 | leaf | salt | 0.17 | MC |
| SRR5856932 | leaf | salt | 0.21 | MC |
| SRR5856933 | leaf | control | 1.88 | MC |
| SRR5856936 | leaf | salt | 0.59 | MC |
| SRR5856937 | leaf | salt | 1.29 | MC |
| SRR6053398 | leaf | Paclobutrazol (PB) | 4.17 | MC |
| SRR6168975 | leaf | none (control) | 0.58 | MC |
| SRR6168977 | leaf | 0.5% Na2CO3 solution for 36h | 0.66 | MC |
| SRR6168978 | leaf | 0.5% Na2CO3 solution for 36h | 0.92 | MC |
| SRR6168980 | leaf | none (control) | 1.25 | MC |
| SRR6168983 | leaf | 0.5% Na2CO3 solution for 36h | 1.62 | MC |
| SRR8582889 | panicle | AM | 0.46 | MC |
| SRR8582890 | panicle | AM | 0.19 | MC |
| SRR8582891 | panicle | PM | 5.70 | MC |
| SRR8582892 | panicle | PM | 4.61 | MC |
| SRR8582893 | panicle | PM | 4.26 | MC |
| SRR5110432 | panicle | Dawn | 0.61 | MC |
| SRR5110434 | panicle | Dawn + 3.5h | 1.98 | MC |
| SRR5110438 | panicle | Dawn + 7h | 4.18 | MC |
| SRR5110439 | panicle | Dawn + 7h | 4.91 | MC |
| SRR5110441 | panicle | Dawn + 10.5h | 3.86 | MC |
| SRR5110442 | panicle | Dawn + 10.5h | 4.23 | MC |
| SRR5110443 | panicle | Dawn + 10.5h | 3.22 | MC |
| SRR5110445 | panicle | Dusk | 3.70 | MC |
| SRR5110447 | panicle | Dusk | 3.62 | MC |
| SRR5110450 | panicle | Dawn + 14h | 4.49 | MC |
| SRR5110451 | panicle | Dawn + 14h | 2.82 | MC |
| SRR1633182 | panicle | WT | 2.89 | MC |
| SRR5278376 | pistil | "Balilla,S2" | 2.76 | MC |
| SRR5278377 | pistil | "Balilla,S2" | 2.84 | MC |
| SRR5278378 | pistil | "Balilla,S3" | 2.29 | MC |
| SRR5278379 | pistil | "Balilla,S3" | 1.51 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 2.62 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 1.15 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 3.22 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 2.24 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 3.41 | MC |
| SRR5126165 | root | "mock,14_days" | 1.35 | MC |
| SRR3472900 | root | nontransgenic_rice_plant | 0.54 | MC |
| SRR4947508 | root | Al | 1.60 | MC |
| SRR6502091 | root | 100 mM NaCl | 0.65 | MC |
| SRR6502092 | root | 100 mM NaCl | 0.61 | MC |
| SRR6502093 | root | 100 mM NaCl | 1.40 | MC |
| SRR6502094 | root | control | 2.26 | MC |
| SRR6502095 | root | control | 1.63 | MC |
| SRR6502096 | root | control | 2.23 | MC |
| SRR6502103 | root | 100 mM NaCl | 1.72 | MC |
| SRR6502104 | root | 100 mM NaCl | 1.19 | MC |
| SRR6502105 | root | 100 mM NaCl | 1.27 | MC |
| SRR6502106 | root | control | 1.93 | MC |
| SRR6502107 | root | control | 1.74 | MC |
| SRR6502108 | root | control | 1.77 | MC |
| SRR6441554 | seedling | wild_type | 0.86 | MC |
| SRR6441555 | seedling | wild_type | 0.50 | MC |
| SRR2857719 | seedling | drought_stress_0h | 1.69 | MC |
| SRR2857720 | seedling | drought_stress_1h | 2.06 | MC |
| SRR2857721 | seedling | drought_stress_6h | 0.48 | MC |
| SRR358792 | seedling | wt | 4.78 | MC |
| SRR358794 | seedling | wt | 2.06 | MC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 4.58 | MC |
| SRR3950248 | shoot | No_DIS;Fr13_inoculated | 2.70 | MC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 1.08 | MC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 0.40 | MC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 1.16 | MC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 0.50 | MC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 0.86 | MC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 2.76 | MC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 1.34 | MC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 1.59 | MC |
| SRR5052710 | shoot_apical_meristem | 0_days_after_shift | 5.48 | MC |
| SRR5052714 | shoot_apical_meristem | 4_days_after_shift | 7.69 | MC |
| SRR5052716 | shoot_apical_meristem | 8_days_after_shift | 8.13 | MC |
| SRR5052720 | shoot_apical_meristem | 8_days_after_shift | 3.12 | MC |
| SRR5052724 | shoot_apical_meristem | 0_days_after_shift | 5.31 | MC |
| SRR5052725 | shoot_apical_meristem | 0_days_after_shift | 7.98 | MC |
| SRR5052726 | shoot_apical_meristem | 0_days_after_shift | 1.94 | MC |
| SRR5052728 | shoot_apical_meristem | 4_days_after_shift | 3.59 | MC |
| SRR5052732 | shoot_apical_meristem | 8_days_after_shift | 3.94 | MC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 2.75 | MC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 0.85 | MC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 2.82 | MC |
| SRR7760294 | spikelet | high temperature treatment (38C) for 7 hrs | 1.15 | MC |
| SRR7760296 | spikelet | high temperature treatment (38C) for 7 hrs | 2.22 | MC |
| SRR7760299 | spikelet | control condition (29C) for 7 hrs | 1.76 | MC |