| SRR6168981 | leaf | none (control) | 0.53 | MC |
| SRR3209769 | leaf | Watered;Long_Day | 1.33 | MC |
| SRR6168982 | leaf | 0.5% Na2CO3 solution for 36h | 0.24 | MC |
| SRR6168984 | leaf | 0.5% Na2CO3 solution for 36h | 0.98 | MC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 0.74 | MC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 0.46 | MC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 1.09 | MC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 1.27 | MC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 1.63 | MC |
| SRR5796959 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 1.17 | MC |
| SRR5110435 | panicle | Dawn + 3.5h | 1.65 | MC |
| SRR5110436 | panicle | Dawn + 3.5h | 0.76 | MC |
| SRR5110431 | panicle | Dawn | 1.61 | MC |
| SRR5110430 | panicle | Dawn | 0.82 | MC |
| SRR3209780 | leaf | Drought;Short_Day | 0.94 | MC |
| SRR5560728 | caryopsis | wild_type | 0.50 | MC |
| SRR6417967 | leaf | H2O_control | 0.77 | MC |
| SRR6417965 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 1.12 | MC |
| SRR4457266 | 2nd_leaf | DAH44 | 2.55 | MC |
| SRR4457264 | 2nd_leaf | DAH44 | 1.75 | MC |
| SRR2857720 | seedling | drought_stress_1h | 0.56 | MC |
| SRR4457261 | 2nd_leaf | DAH36 | 0.78 | MC |
| SRR4457260 | 2nd_leaf | DAH28 | 1.07 | MC |
| SRR3950248 | shoot | No_DIS;Fr13_inoculated | 0.38 | MC |
| SRR3950244 | shoot | Drought_during_3_days;Fr13_inoculated | 0.36 | MC |
| SRR3950245 | shoot | Drought_during_3_days;Fr13_inoculated | 1.24 | MC |
| SRR4947509 | root | Al | 0.80 | MC |
| SRR4947500 | root | Al | 0.71 | MC |
| SRR4947503 | root | control | 0.86 | MC |
| SRR4947505 | root | control | 0.76 | MC |
| SRR4947506 | root | Al | 1.30 | MC |
| SRR4947507 | root | Al | 1.42 | MC |
| SRR3098742 | seedling | wt | 0.81 | MC |
| SRR3098743 | seedling | wt | 0.33 | MC |
| SRR3098741 | seedling | wt | 0.70 | MC |
| SRR8582888 | panicle | AM | 1.77 | MC |
| SRR8582889 | panicle | AM | 0.68 | MC |
| SRR5126153 | root | "mock,7_days" | 0.85 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 0.67 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 0.52 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 0.49 | MC |
| SRR5126157 | root | "mock,7_days" | 0.79 | MC |
| SRR5126155 | root | "mock,7_days" | 0.77 | MC |
| SRR6168980 | leaf | none (control) | 0.51 | MC |
| SRR6502088 | leaf | control | 1.18 | MC |
| SRR7265408 | coleoptile | 3dA | 1.18 | MC |
| SRR7265402 | coleoptile | 2dA | 3.42 | MC |
| SRR7265401 | coleoptile | 2dA | 2.81 | MC |
| SRR7265400 | coleoptile | 2dA | 2.76 | MC |
| SRR7265407 | coleoptile | 3dA | 2.26 | MC |
| SRR7265406 | coleoptile | 3dA | 2.43 | MC |
| SRR7265405 | coleoptile | 2dN | 3.42 | MC |
| SRR1952798 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 1.86 | MC |
| SRR1952799 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 2.68 | MC |
| SRR1952796 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 1.68 | MC |
| SRR1952797 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 0.57 | MC |
| SRR1952794 | leaf | 48_hrs_after_inoculation_with_RS105 | 1.16 | MC |
| SRR1952795 | leaf | 48_hrs_after_inoculation_with_RS105 | 2.32 | MC |
| SRR1952792 | leaf | 48_hrs_after_inoculation_with_L8 | 1.57 | MC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.87 | MC |
| SRR1952790 | leaf | 48_hrs_after_inoculation_with_L8 | 1.97 | MC |
| SRR1952791 | leaf | 48_hrs_after_inoculation_with_L8 | 1.14 | MC |
| SRR1952810 | leaf | 48_hrs_after_mock_inoculation | 2.14 | MC |
| SRR5110446 | panicle | Dusk | 0.47 | MC |
| SRR5110441 | panicle | Dawn + 10.5h | 0.67 | MC |
| SRR5110442 | panicle | Dawn + 10.5h | 0.85 | MC |
| SRR5110443 | panicle | Dawn + 10.5h | 0.83 | MC |
| SRR5110448 | panicle | Dusk | 0.48 | MC |
| SRR5110449 | panicle | Dawn + 14h | 1.02 | MC |
| SRR4457256 | 2nd_leaf | DAH20 | 1.36 | MC |
| SRR4457257 | 2nd_leaf | DAH20 | 1.27 | MC |
| SRR4457254 | 2nd_leaf | DAH12 | 1.14 | MC |
| SRR4457255 | 2nd_leaf | DAH20 | 0.90 | MC |
| SRR4457252 | 2nd_leaf | DAH12 | 0.60 | MC |
| SRR4457253 | 2nd_leaf | DAH12 | 1.03 | MC |
| SRR4457250 | 2nd_leaf | DAH4 | 0.68 | MC |
| SRR4457251 | 2nd_leaf | DAH4 | 0.35 | MC |
| SRR4947478 | root | control | 1.60 | MC |
| SRR4457258 | 2nd_leaf | DAH28 | 2.65 | MC |
| SRR4457259 | 2nd_leaf | DAH28 | 1.62 | MC |
| SRR358796 | callus | wt | 1.59 | MC |
| SRR2338868 | endosprem | high_temperature | 1.21 | MC |
| SRR6502104 | root | 100 mM NaCl | 1.13 | MC |
| SRR6502106 | root | control | 0.99 | MC |
| SRR6502101 | leaf | control | 0.87 | MC |
| SRR6502100 | leaf | control | 1.30 | MC |
| SRR2338867 | endosprem | control | 1.41 | MC |
| SRR3209777 | leaf | Watered;Long_Day | 0.72 | MC |
| SRR3209776 | leaf | Drought;Short_Day | 2.29 | MC |
| SRR3209775 | leaf | Drought;Short_Day | 2.44 | MC |
| SRR3209774 | leaf | Watered;Short_Day | 0.99 | MC |
| SRR3209772 | leaf | Drought;Long_Day | 0.83 | MC |
| SRR3209771 | leaf | Drought;Long_Day | 0.61 | MC |
| SRR3209779 | leaf | Watered;Short_Day | 1.09 | MC |
| SRR5278375 | pistil | "Balilla,S1" | 0.46 | MC |
| SRR5278377 | pistil | "Balilla,S2" | 0.51 | MC |
| SRR5856931 | leaf | salt | 0.33 | MC |
| SRR4947493 | root | Al | 1.15 | MC |
| SRR4947496 | root | control | 0.82 | MC |
| SRR4947497 | root | control | 0.58 | MC |
| SRR4947495 | root | control | 0.92 | MC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 0.31 | MC |
| SRR5796943 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 0.37 | MC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 0.53 | MC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 0.61 | MC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 0.84 | MC |
| SRR5126169 | root | "mock,14_days" | 1.14 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 0.55 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 0.94 | MC |
| SRR5126167 | root | "mock,14_days" | 0.99 | MC |
| SRR5126165 | root | "mock,14_days" | 2.61 | MC |
| SRR4104641 | crown | "Zn_deficiency,8_days_of_treatment" | 0.53 | MC |
| SRR6502085 | leaf | 100 mM NaCl | 0.69 | MC |
| SRR6502086 | leaf | 100 mM NaCl | 0.68 | MC |
| SRR6502087 | leaf | 100 mM NaCl | 1.35 | MC |
| SRR8240819 | leaf | wild_type | 0.28 | MC |
| SRR7265388 | embryo | 12hA | 2.31 | MC |
| SRR7265389 | embryo | 12hA | 3.25 | MC |
| SRR6168975 | leaf | none (control) | 0.41 | MC |
| SRR7760292 | spikelet | control condition (29C) for 7 hrs | 0.46 | MC |
| SRR1952778 | leaf | 48_hrs_after_inoculation_with_BLS256 | 1.51 | MC |
| SRR7760294 | spikelet | high temperature treatment (38C) for 7 hrs | 0.51 | MC |
| SRR1761531 | leaf | control | 0.88 | MC |
| SRR3950255 | shoot | No_DIS;_mock_inoculated | 0.86 | MC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 0.64 | MC |
| SRR4841743 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 4.58 | MC |
| SRR504365 | leaf | wt | 1.35 | MC |
| SRR8582891 | panicle | PM | 0.68 | MC |
| SRR8582890 | panicle | AM | 0.72 | MC |
| SRR8582893 | panicle | PM | 0.86 | MC |
| SRR2154086 | seedling | wt | 0.80 | MC |
| SRR1617557 | shoot_apical_meristem | no collect | 1.17 | MC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 1.99 | MC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 1.52 | MC |
| SRR1952784 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 2.37 | MC |
| SRR1952787 | leaf | 48_hrs_after_inoculation_with_B8_12 | 1.20 | MC |
| SRR1952786 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 1.32 | MC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 0.50 | MC |
| SRR1952780 | leaf | 48_hrs_after_inoculation_with_BLS256 | 1.26 | MC |
| SRR1952783 | leaf | 48_hrs_after_inoculation_with_BLS279 | 0.76 | MC |
| SRR1952782 | leaf | 48_hrs_after_inoculation_with_BLS279 | 0.97 | MC |
| SRR6320473 | carpel | wt | 1.63 | MC |
| SRR5110458 | panicle | Dawn + 21h | 0.86 | MC |
| SRR5110453 | panicle | Dawn + 17.5h | 0.67 | MC |
| SRR5110452 | panicle | Dawn + 14h | 0.65 | MC |
| SRR5110451 | panicle | Dawn + 14h | 0.34 | MC |
| SRR5110450 | panicle | Dawn + 14h | 1.65 | MC |
| SRR5110457 | panicle | Dawn + 21h | 0.61 | MC |
| SRR5110455 | panicle | Dawn + 17.5h | 1.58 | MC |
| SRR5110454 | panicle | Dawn + 17.5h | 0.98 | MC |
| SRR4457245 | flag_leaf | DAH36 | 0.77 | MC |
| SRR4457244 | flag_leaf | DAH36 | 1.87 | MC |
| SRR4457247 | flag_leaf | DAH44 | 1.71 | MC |
| SRR4457246 | flag_leaf | DAH44 | 1.54 | MC |
| SRR4457241 | flag_leaf | DAH28 | 0.65 | MC |
| SRR4457240 | flag_leaf | DAH28 | 0.71 | MC |
| SRR4457243 | flag_leaf | DAH36 | 1.81 | MC |
| SRR4457242 | flag_leaf | DAH28 | 1.38 | MC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 5.62 | MC |
| SRR4457248 | flag_leaf | DAH44 | 1.94 | MC |
| SRR2922624 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 1.42 | MC |
| SRR8611901 | leaf | Non-inoculated | 0.35 | MC |
| SRR2922622 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 1.43 | MC |
| SRR1213695 | root | wt | 0.89 | MC |
| SRR1213697 | endosprem | wt(mature seeds) | 1.53 | MC |
| SRR1213696 | endosprem | wt(milk grains) | 0.72 | MC |
| SRR1213691 | flower | wt | 0.30 | MC |
| SRR1213690 | flower | wt(flower buds) | 0.41 | MC |
| SRR1213693 | leaf | wt | 0.55 | MC |
| SRR1213692 | leaf | wt | 0.39 | MC |
| SRR7760293 | spikelet | control condition (29C) for 7 hrs | 0.71 | MC |
| SRR1761791 | leaf | "wild_type,control,2" | 0.88 | MC |
| SRR4947488 | root | control | 0.53 | MC |
| SRR4947480 | root | control | 0.88 | MC |
| SRR4947484 | root | Al | 1.72 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 0.98 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 1.39 | MC |
| SRR6502093 | root | 100 mM NaCl | 1.72 | MC |
| SRR6502092 | root | 100 mM NaCl | 1.20 | MC |
| SRR6502091 | root | 100 mM NaCl | 0.54 | MC |
| SRR6502090 | leaf | control | 1.07 | MC |
| SRR6502096 | root | control | 0.63 | MC |
| SRR6502095 | root | control | 0.62 | MC |
| SRR6502098 | leaf | 100 mM NaCl | 0.86 | MC |
| SRR7265393 | embryo | 12hN | 2.91 | MC |
| SRR7265392 | embryo | 12hN | 4.25 | MC |
| SRR7265391 | embryo | 12hN | 2.59 | MC |
| SRR7265390 | embryo | 12hA | 2.39 | MC |
| SRR7265397 | embryo | 24hN | 4.16 | MC |
| SRR7265396 | embryo | 24hA | 2.79 | MC |
| SRR7265395 | embryo | 24hA | 4.22 | MC |
| SRR7265394 | embryo | 24hA | 3.04 | MC |
| SRR7265398 | embryo | 24hN | 4.08 | MC |
| SRR8240820 | leaf | wild_type | 0.36 | MC |
| SRR4457238 | flag_leaf | DAH20 | 1.16 | MC |
| SRR4457234 | flag_leaf | DAH12 | 1.02 | MC |
| SRR4457235 | flag_leaf | DAH12 | 0.51 | MC |
| SRR4457236 | flag_leaf | DAH12 | 0.35 | MC |
| SRR4457237 | flag_leaf | DAH20 | 0.39 | MC |
| SRR4457231 | flag_leaf | DAH4 | 0.35 | MC |
| SRR4457232 | flag_leaf | DAH4 | 1.04 | MC |
| SRR4457233 | flag_leaf | DAH4 | 0.64 | MC |
| SRR1761528 | leaf | drought | 1.55 | MC |
| SRR6168974 | leaf | none (control) | 0.48 | MC |
| SRR1952804 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 2.36 | MC |
| SRR6168979 | leaf | none (control) | 0.72 | MC |
| SRR1633182 | panicle | WT | 1.92 | MC |
| SRR1633185 | panicle | WT | 4.79 | MC |
| SRR8060835 | leaf | wild_type | 0.80 | MC |
| SRR8060837 | leaf | wild_type | 0.53 | MC |
| SRR6502103 | root | 100 mM NaCl | 0.51 | MC |
| SRR6502102 | leaf | control | 2.17 | MC |
| SRR5110429 | panicle | Dawn | 0.66 | MC |
| SRR7760300 | spikelet | high temperature treatment (38C) for 7 hrs | 0.28 | MC |
| SRR7760301 | spikelet | high temperature treatment (38C) for 7 hrs | 0.19 | MC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 0.15 | MC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 7.58 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 8.90 | MC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 5.74 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 0.52 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 0.51 | MC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 0.26 | MC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 0.47 | MC |
| SRR1761788 | leaf | "wild_type,drought,2" | 1.55 | MC |
| SRR1761780 | leaf | "wild_type,drought,1" | 1.55 | MC |
| SRR1761783 | leaf | "wild_type,control,1" | 0.88 | MC |
| SRR2857719 | seedling | drought_stress_0h | 1.12 | MC |
| SRR5126148 | root | "mock,1_day" | 0.95 | MC |
| SRR5126149 | root | "mock,1_day" | 1.39 | MC |
| SRR4457263 | 2nd_leaf | DAH36 | 1.05 | MC |
| SRR5126147 | root | "mock,1_day" | 1.17 | MC |
| SRR2857721 | seedling | drought_stress_6h | 0.91 | MC |
| SRR7265413 | coleoptile | 4dA | 2.12 | MC |
| SRR7265418 | coleoptile | 3dN1dA | 1.98 | MC |
| SRR7265419 | coleoptile | 3dN1dA | 2.90 | MC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 2.21 | MC |
| SRR1952803 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 1.11 | MC |
| SRR1952800 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 2.92 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 1.65 | MC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 1.77 | MC |
| SRR1952807 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.68 | MC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.70 | MC |
| SRR1952808 | leaf | 48_hrs_after_mock_inoculation | 1.09 | MC |
| SRR7265420 | coleoptile | 3dN1dA | 2.47 | MC |