| SRR358795 | callus | wt | 2.07 | MC |
| SRR358796 | callus | wt | 1.26 | MC |
| SRR358797 | callus | wt | 1.54 | MC |
| SRR358798 | callus | wt | 1.35 | MC |
| SRR4104647 | crown | "Zn_Efficient,8_days_of_treatment" | 0.43 | MC |
| SRR4104641 | crown | "Zn_deficiency,8_days_of_treatment" | 1.21 | MC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 2.83 | MC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 2.37 | MC |
| SRR2922622 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 0.71 | MC |
| SRR1952778 | leaf | 48_hrs_after_inoculation_with_BLS256 | 0.60 | MC |
| SRR1952784 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 0.61 | MC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.64 | MC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.59 | MC |
| SRR1952792 | leaf | 48_hrs_after_inoculation_with_L8 | 0.44 | MC |
| SRR1952794 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.58 | MC |
| SRR1952797 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 0.54 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 0.21 | MC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 0.89 | MC |
| SRR1952803 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 0.58 | MC |
| SRR1952804 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 0.89 | MC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.76 | MC |
| SRR1952808 | leaf | 48_hrs_after_mock_inoculation | 0.71 | MC |
| SRR1761788 | leaf | "wild_type,drought,2" | 1.26 | MC |
| SRR1761789 | leaf | "wild_type,drought,2" | 0.61 | MC |
| SRR1761790 | leaf | "wild_type,control,2" | 1.11 | MC |
| SRR1761791 | leaf | "wild_type,control,2" | 1.39 | MC |
| SRR1761780 | leaf | "wild_type,drought,1" | 1.26 | MC |
| SRR1761781 | leaf | "wild_type,drought,1" | 0.61 | MC |
| SRR1761782 | leaf | "wild_type,control,1" | 1.11 | MC |
| SRR1761783 | leaf | "wild_type,control,1" | 1.39 | MC |
| SRR1761528 | leaf | drought | 1.26 | MC |
| SRR1761529 | leaf | drought | 0.61 | MC |
| SRR1761530 | leaf | control | 1.11 | MC |
| SRR1761531 | leaf | control | 1.39 | MC |
| SRR504365 | leaf | wt | 2.05 | MC |
| SRR3209769 | leaf | Watered;Long_Day | 0.99 | MC |
| SRR3209770 | leaf | Watered;Long_Day | 1.16 | MC |
| SRR3209771 | leaf | Drought;Long_Day | 1.00 | MC |
| SRR3209772 | leaf | Drought;Long_Day | 0.96 | MC |
| SRR3209773 | leaf | Watered;Short_Day | 0.77 | MC |
| SRR3209774 | leaf | Watered;Short_Day | 0.92 | MC |
| SRR3209775 | leaf | Drought;Short_Day | 0.59 | MC |
| SRR3209776 | leaf | Drought;Short_Day | 1.08 | MC |
| SRR3209777 | leaf | Watered;Long_Day | 0.59 | MC |
| SRR3209778 | leaf | Drought;Long_Day | 1.15 | MC |
| SRR3209779 | leaf | Watered;Short_Day | 0.48 | MC |
| SRR3209780 | leaf | Drought;Short_Day | 0.89 | MC |
| SRR1213692 | leaf | wt | 0.49 | MC |
| SRR1213693 | leaf | wt | 0.29 | MC |
| SRR6502085 | leaf | 100 mM NaCl | 1.28 | MC |
| SRR6502086 | leaf | 100 mM NaCl | 0.39 | MC |
| SRR6502087 | leaf | 100 mM NaCl | 1.50 | MC |
| SRR6502088 | leaf | control | 1.25 | MC |
| SRR6502089 | leaf | control | 0.76 | MC |
| SRR6502090 | leaf | control | 1.03 | MC |
| SRR6502097 | leaf | 100 mM NaCl | 1.80 | MC |
| SRR6502098 | leaf | 100 mM NaCl | 2.25 | MC |
| SRR6502099 | leaf | 100 mM NaCl | 0.36 | MC |
| SRR6502100 | leaf | control | 0.78 | MC |
| SRR6502101 | leaf | control | 1.43 | MC |
| SRR6502102 | leaf | control | 2.11 | MC |
| SRR5110429 | panicle | Dawn | 1.25 | MC |
| SRR5110430 | panicle | Dawn | 0.74 | MC |
| SRR5110431 | panicle | Dawn | 0.58 | MC |
| SRR5110432 | panicle | Dawn | 1.48 | MC |
| SRR5110433 | panicle | Dawn + 3.5h | 0.60 | MC |
| SRR5110438 | panicle | Dawn + 7h | 1.02 | MC |
| SRR5110441 | panicle | Dawn + 10.5h | 1.40 | MC |
| SRR5110442 | panicle | Dawn + 10.5h | 0.71 | MC |
| SRR5110443 | panicle | Dawn + 10.5h | 0.46 | MC |
| SRR5110444 | panicle | Dawn + 10.5h | 3.01 | MC |
| SRR5110445 | panicle | Dusk | 0.75 | MC |
| SRR5110446 | panicle | Dusk | 0.67 | MC |
| SRR5110447 | panicle | Dusk | 0.63 | MC |
| SRR5110448 | panicle | Dusk | 2.27 | MC |
| SRR5110449 | panicle | Dawn + 14h | 1.43 | MC |
| SRR5110450 | panicle | Dawn + 14h | 1.10 | MC |
| SRR5110451 | panicle | Dawn + 14h | 0.58 | MC |
| SRR5110452 | panicle | Dawn + 14h | 2.06 | MC |
| SRR5110453 | panicle | Dawn + 17.5h | 1.20 | MC |
| SRR5110454 | panicle | Dawn + 17.5h | 0.52 | MC |
| SRR5110455 | panicle | Dawn + 17.5h | 0.63 | MC |
| SRR5110456 | panicle | Dawn + 17.5h | 1.70 | MC |
| SRR5110457 | panicle | Dawn + 21h | 0.49 | MC |
| SRR5110458 | panicle | Dawn + 21h | 0.60 | MC |
| SRR5110459 | panicle | Dawn + 21h | 1.37 | MC |
| SRR5110460 | panicle | Dawn + 21h | 0.62 | MC |
| SRR1213695 | root | wt | 0.30 | MC |
| SRR6502091 | root | 100 mM NaCl | 0.65 | MC |
| SRR6502093 | root | 100 mM NaCl | 0.52 | MC |
| SRR6502103 | root | 100 mM NaCl | 0.46 | MC |
| SRR6502104 | root | 100 mM NaCl | 0.50 | MC |
| SRR6502105 | root | 100 mM NaCl | 0.36 | MC |
| SRR1740432 | root_elongation_zone | wt | 0.24 | MC |
| SRR2154085 | seedling | wt | 3.35 | MC |
| SRR1944583 | seedling | no_treatment | 0.61 | MC |
| SRR358792 | seedling | wt | 1.50 | MC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 4.93 | MC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 4.97 | MC |
| SRR4841741 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 2.19 | MC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 3.84 | MC |
| SRR3950244 | shoot | Drought_during_3_days;Fr13_inoculated | 0.25 | MC |
| SRR3950245 | shoot | Drought_during_3_days;Fr13_inoculated | 0.23 | MC |
| SRR3950246 | shoot | Drought_during_3_days;Fr13_inoculated | 0.30 | MC |
| SRR3950248 | shoot | No_DIS;Fr13_inoculated | 0.28 | MC |
| SRR3950249 | shoot | No_DIS;Fr13_inoculated | 0.18 | MC |
| SRR3950251 | shoot | Drought_during_3_days;_mock_inoculated | 0.45 | MC |
| SRR5052709 | shoot_apical_meristem | 0_days_after_shift | 0.46 | MC |
| SRR7760296 | spikelet | high temperature treatment (38C) for 7 hrs | 0.43 | MC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 0.20 | MC |