| SRR4457249 | 2nd_leaf | DAH4 | 2.35 | MC |
| SRR4457250 | 2nd_leaf | DAH4 | 3.50 | MC |
| SRR4457251 | 2nd_leaf | DAH4 | 2.77 | MC |
| SRR4457252 | 2nd_leaf | DAH12 | 3.00 | MC |
| SRR4457257 | 2nd_leaf | DAH20 | 3.25 | MC |
| SRR4457261 | 2nd_leaf | DAH36 | 4.49 | MC |
| SRR4457262 | 2nd_leaf | DAH36 | 4.53 | MC |
| SRR4457263 | 2nd_leaf | DAH36 | 4.23 | MC |
| SRR4457264 | 2nd_leaf | DAH44 | 2.55 | MC |
| SRR4457265 | 2nd_leaf | DAH44 | 4.00 | MC |
| SRR4457266 | 2nd_leaf | DAH44 | 2.76 | MC |
| SRR3745125 | anther | wt | 2.97 | MC |
| SRR3745126 | anther | wt | 0.78 | MC |
| SRR3745127 | anther | wt | 3.25 | MC |
| SRR358795 | callus | wt | 4.20 | MC |
| SRR6320473 | carpel | wt | 6.04 | MC |
| SRR6320498 | carpel | wt | 2.41 | MC |
| SRR5560727 | caryopsis | wild_type | 2.68 | MC |
| SRR5560728 | caryopsis | wild_type | 3.86 | MC |
| SRR5560729 | caryopsis | wild_type | 3.89 | MC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 2.71 | MC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 1.07 | MC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 1.40 | MC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 0.85 | MC |
| SRR7265405 | coleoptile | 2dN | 1.64 | MC |
| SRR7265408 | coleoptile | 3dA | 2.37 | MC |
| SRR7265409 | coleoptile | 3dN | 3.98 | MC |
| SRR7265410 | coleoptile | 3dN | 2.35 | MC |
| SRR7265411 | coleoptile | 3dN | 2.18 | MC |
| SRR7265413 | coleoptile | 4dA | 4.51 | MC |
| SRR7265414 | coleoptile | 4dA | 1.73 | MC |
| SRR7265415 | coleoptile | 4dN | 2.65 | MC |
| SRR7265416 | coleoptile | 4dN | 2.61 | MC |
| SRR7265417 | coleoptile | 4dN | 2.54 | MC |
| SRR7265418 | coleoptile | 3dN1dA | 1.75 | MC |
| SRR7265419 | coleoptile | 3dN1dA | 2.80 | MC |
| SRR7265420 | coleoptile | 3dN1dA | 2.67 | MC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 2.18 | MC |
| SRR4104637 | crown | "Zn_deficiency,8_days_of_treatment" | 2.87 | MC |
| SRR4104647 | crown | "Zn_Efficient,8_days_of_treatment" | 2.01 | MC |
| SRR4104640 | crown | "Zn_deficiency,8_days_of_treatment" | 3.51 | MC |
| SRR4104643 | crown | "Zn_Efficient,8_days_of_treatment" | 3.11 | MC |
| SRR4104644 | crown | "Zn_Efficient,8_days_of_treatment" | 1.48 | MC |
| SRR7265375 | embryo | dry seed 0 h | 1.24 | MC |
| SRR7265388 | embryo | 12hA | 2.38 | MC |
| SRR7265392 | embryo | 12hN | 3.06 | MC |
| SRR7265393 | embryo | 12hN | 2.67 | MC |
| SRR7265397 | embryo | 24hN | 2.43 | MC |
| SRR7265398 | embryo | 24hN | 4.36 | MC |
| SRR2338867 | endosprem | control | 1.68 | MC |
| SRR976168 | flag_leaf | wild_type | 2.33 | MC |
| SRR4457231 | flag_leaf | DAH4 | 1.54 | MC |
| SRR4457234 | flag_leaf | DAH12 | 2.37 | MC |
| SRR4457236 | flag_leaf | DAH12 | 2.80 | MC |
| SRR4457238 | flag_leaf | DAH20 | 3.75 | MC |
| SRR4457240 | flag_leaf | DAH28 | 4.85 | MC |
| SRR4457241 | flag_leaf | DAH28 | 3.41 | MC |
| SRR4457243 | flag_leaf | DAH36 | 1.88 | MC |
| SRR4457247 | flag_leaf | DAH44 | 3.76 | MC |
| SRR4457248 | flag_leaf | DAH44 | 3.60 | MC |
| SRR1213690 | flower | wt(flower buds) | 1.59 | MC |
| SRR1213691 | flower | wt | 0.97 | MC |
| SRR8060835 | leaf | wild_type | 1.23 | MC |
| SRR8060836 | leaf | wild_type | 3.00 | MC |
| SRR8240824 | leaf | wild_type | 2.03 | MC |
| SRR8240818 | leaf | wild_type | 0.79 | MC |
| SRR8240819 | leaf | wild_type | 0.43 | MC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 0.59 | MC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 1.09 | MC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 1.09 | MC |
| SRR2922622 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 3.44 | MC |
| SRR2922623 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 3.34 | MC |
| SRR1952778 | leaf | 48_hrs_after_inoculation_with_BLS256 | 3.45 | MC |
| SRR1952779 | leaf | 48_hrs_after_inoculation_with_BLS256 | 4.35 | MC |
| SRR1952782 | leaf | 48_hrs_after_inoculation_with_BLS279 | 4.54 | MC |
| SRR1952784 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 2.78 | MC |
| SRR1952785 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 5.22 | MC |
| SRR1952787 | leaf | 48_hrs_after_inoculation_with_B8_12 | 2.39 | MC |
| SRR1952791 | leaf | 48_hrs_after_inoculation_with_L8 | 2.94 | MC |
| SRR1952792 | leaf | 48_hrs_after_inoculation_with_L8 | 2.09 | MC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 3.91 | MC |
| SRR1952795 | leaf | 48_hrs_after_inoculation_with_RS105 | 2.28 | MC |
| SRR1952796 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 2.62 | MC |
| SRR1952797 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 3.26 | MC |
| SRR1952798 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 2.51 | MC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 3.48 | MC |
| SRR1952803 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 1.41 | MC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 2.44 | MC |
| SRR1952808 | leaf | 48_hrs_after_mock_inoculation | 2.46 | MC |
| SRR1952810 | leaf | 48_hrs_after_mock_inoculation | 3.09 | MC |
| SRR1761790 | leaf | "wild_type,control,2" | 1.57 | MC |
| SRR1761782 | leaf | "wild_type,control,1" | 1.57 | MC |
| SRR1761530 | leaf | control | 1.57 | MC |
| SRR504365 | leaf | wt | 0.90 | MC |
| SRR6417964 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 1.44 | MC |
| SRR6417966 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 0.98 | MC |
| SRR6417967 | leaf | H2O_control | 2.33 | MC |
| SRR6417968 | leaf | H2O_control | 1.27 | MC |
| SRR6417969 | leaf | H2O_control | 1.12 | MC |
| SRR3209770 | leaf | Watered;Long_Day | 2.91 | MC |
| SRR3209773 | leaf | Watered;Short_Day | 2.64 | MC |
| SRR3209774 | leaf | Watered;Short_Day | 1.65 | MC |
| SRR3209779 | leaf | Watered;Short_Day | 2.23 | MC |
| SRR8611900 | leaf | Non-inoculated | 2.51 | MC |
| SRR8611901 | leaf | Non-inoculated | 2.73 | MC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 1.52 | MC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 1.55 | MC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 0.32 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 2.27 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 1.85 | MC |
| SRR1213692 | leaf | wt | 1.14 | MC |
| SRR1213693 | leaf | wt | 2.55 | MC |
| SRR6502089 | leaf | control | 1.81 | MC |
| SRR6502090 | leaf | control | 0.67 | MC |
| SRR6502097 | leaf | 100 mM NaCl | 2.02 | MC |
| SRR6502099 | leaf | 100 mM NaCl | 1.81 | MC |
| SRR5856935 | leaf | control | 2.04 | MC |
| SRR6053397 | leaf | gibberellic acid (GA) | 4.75 | MC |
| SRR6053399 | leaf | Paclobutrazol (PB) | 2.08 | MC |
| SRR6053400 | leaf | Paclobutrazol (PB) | 3.24 | MC |
| SRR6168973 | leaf | none (control) | 1.80 | MC |
| SRR6168974 | leaf | none (control) | 4.84 | MC |
| SRR6168975 | leaf | none (control) | 0.91 | MC |
| SRR6168976 | leaf | 0.5% Na2CO3 solution for 36h | 4.05 | MC |
| SRR6168978 | leaf | 0.5% Na2CO3 solution for 36h | 4.44 | MC |
| SRR6168981 | leaf | none (control) | 0.80 | MC |
| SRR8582888 | panicle | AM | 1.08 | MC |
| SRR8582889 | panicle | AM | 1.01 | MC |
| SRR8582891 | panicle | PM | 2.35 | MC |
| SRR8582893 | panicle | PM | 0.63 | MC |
| SRR5110440 | panicle | Dawn + 7h | 4.91 | MC |
| SRR1213696 | endosprem | wt(milk grains) | 0.58 | MC |
| SRR1633182 | panicle | WT | 1.99 | MC |
| SRR5278374 | pistil | "Balilla,S1" | 2.33 | MC |
| SRR5278375 | pistil | "Balilla,S1" | 1.67 | MC |
| SRR5278376 | pistil | "Balilla,S2" | 4.05 | MC |
| SRR5278377 | pistil | "Balilla,S2" | 4.15 | MC |
| SRR5278378 | pistil | "Balilla,S3" | 3.85 | MC |
| SRR5278379 | pistil | "Balilla,S3" | 3.22 | MC |
| SRR5126157 | root | "mock,7_days" | 2.58 | MC |
| SRR1213694 | root | wt | 1.25 | MC |
| SRR1213695 | root | wt | 1.24 | MC |
| SRR4947478 | root | control | 3.59 | MC |
| SRR4947480 | root | control | 4.34 | MC |
| SRR4947482 | root | Al | 1.67 | MC |
| SRR4947485 | root | Al | 0.64 | MC |
| SRR4947488 | root | control | 2.35 | MC |
| SRR4947489 | root | control | 4.62 | MC |
| SRR4947492 | root | Al | 5.47 | MC |
| SRR4947493 | root | Al | 2.58 | MC |
| SRR4947494 | root | control | 2.77 | MC |
| SRR4947497 | root | control | 1.66 | MC |
| SRR4947498 | root | Al | 4.21 | MC |
| SRR4947500 | root | Al | 2.37 | MC |
| SRR4947501 | root | Al | 5.15 | MC |
| SRR4947503 | root | control | 2.03 | MC |
| SRR4947505 | root | control | 3.66 | MC |
| SRR4947506 | root | Al | 1.59 | MC |
| SRR4947507 | root | Al | 1.95 | MC |
| SRR6502096 | root | control | 1.65 | MC |
| SRR6502103 | root | 100 mM NaCl | 4.23 | MC |
| SRR1740434 | root_differentiation_zone | wt | 0.54 | MC |
| SRR1740435 | root_differentiation_zone | wt | 2.21 | MC |
| SRR1740431 | root_elongation_zone | wt | 1.01 | MC |
| SRR1740432 | root_elongation_zone | wt | 2.93 | MC |
| SRR1740429 | root_meristematic_zone | wt | 1.22 | MC |
| SRR6441554 | seedling | wild_type | 0.21 | MC |
| SRR6441555 | seedling | wild_type | 2.56 | MC |
| SRR2154086 | seedling | wt | 1.83 | MC |
| SRR2154082 | seedling | wt | 2.04 | MC |
| SRR2154084 | seedling | wt | 1.90 | MC |
| SRR2154085 | seedling | wt | 2.29 | MC |
| SRR2154087 | seedling | wt | 2.63 | MC |
| SRR3098741 | seedling | wt | 0.48 | MC |
| SRR3098742 | seedling | wt | 0.74 | MC |
| SRR3098743 | seedling | wt | 2.44 | MC |
| SRR2857720 | seedling | drought_stress_1h | 2.20 | MC |
| SRR1944583 | seedling | no_treatment | 0.80 | MC |
| SRR358791 | seedling | wt | 3.13 | MC |
| SRR358792 | seedling | wt | 3.91 | MC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 4.57 | MC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 8.23 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 8.69 | MC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 7.36 | MC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 5.14 | MC |
| SRR4841741 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 1.84 | MC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 4.12 | MC |
| SRR4841743 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 6.49 | MC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 2.76 | MC |
| SRR5796941 | shoot | "Control,22C for 10 min" | 1.57 | MC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 1.75 | MC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 1.97 | MC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 0.90 | MC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 0.88 | MC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 1.43 | MC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 2.10 | MC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 1.72 | MC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 1.60 | MC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 2.79 | MC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 2.76 | MC |
| SRR5796958 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 0.55 | MC |
| SRR5796959 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 2.35 | MC |
| SRR5052708 | shoot_apical_meristem | 0_days_after_shift | 3.67 | MC |
| SRR5052709 | shoot_apical_meristem | 0_days_after_shift | 4.92 | MC |
| SRR5052710 | shoot_apical_meristem | 0_days_after_shift | 6.15 | MC |
| SRR5052711 | shoot_apical_meristem | 4_days_after_shift | 6.85 | MC |
| SRR5052713 | shoot_apical_meristem | 4_days_after_shift | 8.34 | MC |
| SRR5052714 | shoot_apical_meristem | 4_days_after_shift | 6.09 | MC |
| SRR5052716 | shoot_apical_meristem | 8_days_after_shift | 9.29 | MC |
| SRR5052719 | shoot_apical_meristem | 8_days_after_shift | 3.48 | MC |
| SRR5052720 | shoot_apical_meristem | 8_days_after_shift | 6.49 | MC |
| SRR5052721 | shoot_apical_meristem | 12_days_after_shift | 2.99 | MC |
| SRR5052722 | shoot_apical_meristem | 12_days_after_shift | 3.42 | MC |
| SRR5052723 | shoot_apical_meristem | 12_days_after_shift | 4.74 | MC |
| SRR5052724 | shoot_apical_meristem | 0_days_after_shift | 4.42 | MC |
| SRR5052725 | shoot_apical_meristem | 0_days_after_shift | 6.95 | MC |
| SRR5052726 | shoot_apical_meristem | 0_days_after_shift | 5.61 | MC |
| SRR5052727 | shoot_apical_meristem | 4_days_after_shift | 6.21 | MC |
| SRR5052730 | shoot_apical_meristem | 4_days_after_shift | 6.85 | MC |
| SRR5052731 | shoot_apical_meristem | 8_days_after_shift | 7.12 | MC |
| SRR5052732 | shoot_apical_meristem | 8_days_after_shift | 7.64 | MC |
| SRR5052733 | shoot_apical_meristem | 8_days_after_shift | 4.05 | MC |
| SRR5052734 | shoot_apical_meristem | 12_days_after_shift | 4.54 | MC |
| SRR5052735 | shoot_apical_meristem | 12_days_after_shift | 3.54 | MC |
| SRR1617550 | shoot_apical_meristem | no collect | 3.90 | MC |
| SRR1617554 | shoot_apical_meristem | no collect | 1.12 | MC |
| SRR1617557 | shoot_apical_meristem | no collect | 3.07 | MC |
| SRR1617558 | shoot_apical_meristem | no collect | 4.19 | MC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 1.56 | MC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 1.17 | MC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 1.23 | MC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 3.35 | MC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 0.84 | MC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 2.12 | MC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 2.09 | MC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 4.37 | MC |
| SRR7760294 | spikelet | high temperature treatment (38C) for 7 hrs | 3.33 | MC |
| SRR7760297 | spikelet | control condition (29C) for 7 hrs | 2.06 | MC |
| SRR7760299 | spikelet | control condition (29C) for 7 hrs | 1.34 | MC |
| SRR7760300 | spikelet | high temperature treatment (38C) for 7 hrs | 2.39 | MC |
| SRR7760301 | spikelet | high temperature treatment (38C) for 7 hrs | 1.85 | MC |