| SRR5560727 | caryopsis | wild_type | 0.73 | MC |
| SRR5560728 | caryopsis | wild_type | 1.03 | MC |
| SRR5560729 | caryopsis | wild_type | 0.60 | MC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 3.18 | MC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 1.38 | MC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 0.76 | MC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 2.63 | MC |
| SRR7265400 | coleoptile | 2dA | 1.68 | MC |
| SRR7265401 | coleoptile | 2dA | 1.12 | MC |
| SRR7265402 | coleoptile | 2dA | 0.80 | MC |
| SRR7265403 | coleoptile | 2dN | 0.39 | MC |
| SRR7265405 | coleoptile | 2dN | 0.37 | MC |
| SRR7265406 | coleoptile | 3dA | 1.13 | MC |
| SRR7265407 | coleoptile | 3dA | 2.02 | MC |
| SRR7265408 | coleoptile | 3dA | 1.86 | MC |
| SRR7265409 | coleoptile | 3dN | 0.97 | MC |
| SRR7265410 | coleoptile | 3dN | 1.08 | MC |
| SRR7265411 | coleoptile | 3dN | 0.63 | MC |
| SRR7265412 | coleoptile | 4dA | 1.95 | MC |
| SRR7265414 | coleoptile | 4dA | 2.42 | MC |
| SRR7265415 | coleoptile | 4dN | 1.10 | MC |
| SRR7265416 | coleoptile | 4dN | 0.67 | MC |
| SRR7265417 | coleoptile | 4dN | 1.21 | MC |
| SRR7265418 | coleoptile | 3dN1dA | 3.82 | MC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 1.11 | MC |
| SRR7265376 | embryo | 1hA | 0.37 | MC |
| SRR7265394 | embryo | 24hA | 0.75 | MC |
| SRR7265396 | embryo | 24hA | 1.00 | MC |
| SRR1213690 | flower | wt(flower buds) | 0.78 | MC |
| SRR1213691 | flower | wt | 1.20 | MC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 1.94 | MC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 1.70 | MC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 0.45 | MC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 1.90 | MC |
| SRR2922622 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 1.74 | MC |
| SRR2922623 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 1.69 | MC |
| SRR2922624 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 2.38 | MC |
| SRR1952778 | leaf | 48_hrs_after_inoculation_with_BLS256 | 0.52 | MC |
| SRR1952780 | leaf | 48_hrs_after_inoculation_with_BLS256 | 0.83 | MC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 2.80 | MC |
| SRR1952782 | leaf | 48_hrs_after_inoculation_with_BLS279 | 1.29 | MC |
| SRR1952783 | leaf | 48_hrs_after_inoculation_with_BLS279 | 1.06 | MC |
| SRR1952784 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 2.09 | MC |
| SRR1952786 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 1.15 | MC |
| SRR1952787 | leaf | 48_hrs_after_inoculation_with_B8_12 | 1.06 | MC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 1.73 | MC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 1.59 | MC |
| SRR1952790 | leaf | 48_hrs_after_inoculation_with_L8 | 2.46 | MC |
| SRR1952791 | leaf | 48_hrs_after_inoculation_with_L8 | 1.78 | MC |
| SRR1952792 | leaf | 48_hrs_after_inoculation_with_L8 | 0.63 | MC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 1.77 | MC |
| SRR1952794 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.86 | MC |
| SRR1952795 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.44 | MC |
| SRR1952796 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 1.37 | MC |
| SRR1952797 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 1.80 | MC |
| SRR1952798 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 1.66 | MC |
| SRR1952799 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 2.30 | MC |
| SRR1952800 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 1.68 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 1.46 | MC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 2.58 | MC |
| SRR1952803 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 2.59 | MC |
| SRR1952804 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 2.91 | MC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 1.50 | MC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 1.64 | MC |
| SRR1952807 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 1.14 | MC |
| SRR1952808 | leaf | 48_hrs_after_mock_inoculation | 1.45 | MC |
| SRR504365 | leaf | wt | 0.27 | MC |
| SRR6417964 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 1.23 | MC |
| SRR6417969 | leaf | H2O_control | 0.57 | MC |
| SRR3209771 | leaf | Drought;Long_Day | 3.18 | MC |
| SRR3209772 | leaf | Drought;Long_Day | 1.91 | MC |
| SRR3209773 | leaf | Watered;Short_Day | 0.24 | MC |
| SRR3209775 | leaf | Drought;Short_Day | 0.63 | MC |
| SRR3209776 | leaf | Drought;Short_Day | 0.80 | MC |
| SRR3209777 | leaf | Watered;Long_Day | 0.62 | MC |
| SRR3209778 | leaf | Drought;Long_Day | 1.90 | MC |
| SRR3209780 | leaf | Drought;Short_Day | 1.14 | MC |
| SRR8611900 | leaf | Non-inoculated | 0.47 | MC |
| SRR8611901 | leaf | Non-inoculated | 0.33 | MC |
| SRR8611902 | leaf | Non-inoculated | 0.37 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 0.41 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 0.49 | MC |
| SRR1213692 | leaf | wt | 0.48 | MC |
| SRR1213693 | leaf | wt | 0.27 | MC |
| SRR8582888 | panicle | AM | 0.62 | MC |
| SRR8582889 | panicle | AM | 0.24 | MC |
| SRR8582890 | panicle | AM | 0.70 | MC |
| SRR8582891 | panicle | PM | 1.10 | MC |
| SRR8582892 | panicle | PM | 1.27 | MC |
| SRR8582893 | panicle | PM | 0.71 | MC |
| SRR1213697 | endosprem | wt(mature seeds) | 0.30 | MC |
| SRR5278376 | pistil | "Balilla,S2" | 2.85 | MC |
| SRR5278377 | pistil | "Balilla,S2" | 2.14 | MC |
| SRR5278378 | pistil | "Balilla,S3" | 0.84 | MC |
| SRR5278379 | pistil | "Balilla,S3" | 0.48 | MC |
| SRR5126147 | root | "mock,1_day" | 0.40 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 0.60 | MC |
| SRR5126153 | root | "mock,7_days" | 1.20 | MC |
| SRR5126157 | root | "mock,7_days" | 0.74 | MC |
| SRR5126169 | root | "mock,14_days" | 0.32 | MC |
| SRR1213695 | root | wt | 0.36 | MC |
| SRR6441554 | seedling | wild_type | 0.32 | MC |
| SRR2154086 | seedling | wt | 0.62 | MC |
| SRR2154087 | seedling | wt | 1.18 | MC |
| SRR3098741 | seedling | wt | 1.75 | MC |
| SRR3098742 | seedling | wt | 1.91 | MC |
| SRR3098743 | seedling | wt | 1.06 | MC |
| SRR2857719 | seedling | drought_stress_0h | 0.54 | MC |
| SRR2857721 | seedling | drought_stress_6h | 0.42 | MC |
| SRR1944583 | seedling | no_treatment | 2.70 | MC |
| SRR358791 | seedling | wt | 1.52 | MC |
| SRR358792 | seedling | wt | 0.93 | MC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 4.30 | MC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 4.48 | MC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 5.16 | MC |
| SRR3950244 | shoot | Drought_during_3_days;Fr13_inoculated | 0.19 | MC |
| SRR3950245 | shoot | Drought_during_3_days;Fr13_inoculated | 0.26 | MC |
| SRR3950248 | shoot | No_DIS;Fr13_inoculated | 0.24 | MC |
| SRR3950253 | shoot | No_DIS;_mock_inoculated | 0.45 | MC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 0.74 | MC |
| SRR5796943 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 0.41 | MC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 0.61 | MC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 0.97 | MC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 1.13 | MC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 1.41 | MC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 1.60 | MC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 1.59 | MC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 0.62 | MC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 0.69 | MC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 1.15 | MC |
| SRR5796958 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 0.72 | MC |
| SRR5796959 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 0.67 | MC |