| SRR4457249 | 2nd_leaf | DAH4 | 2.92 | MC |
| SRR4457250 | 2nd_leaf | DAH4 | 1.99 | MC |
| SRR4457251 | 2nd_leaf | DAH4 | 2.10 | MC |
| SRR4457254 | 2nd_leaf | DAH12 | 3.24 | MC |
| SRR4457255 | 2nd_leaf | DAH20 | 3.00 | MC |
| SRR4457256 | 2nd_leaf | DAH20 | 3.68 | MC |
| SRR4457257 | 2nd_leaf | DAH20 | 3.38 | MC |
| SRR4457258 | 2nd_leaf | DAH28 | 3.74 | MC |
| SRR4457259 | 2nd_leaf | DAH28 | 4.24 | MC |
| SRR4457260 | 2nd_leaf | DAH28 | 3.59 | MC |
| SRR4457261 | 2nd_leaf | DAH36 | 1.72 | MC |
| SRR4457262 | 2nd_leaf | DAH36 | 1.62 | MC |
| SRR4457263 | 2nd_leaf | DAH36 | 3.86 | MC |
| SRR4457264 | 2nd_leaf | DAH44 | 2.11 | MC |
| SRR4457265 | 2nd_leaf | DAH44 | 3.77 | MC |
| SRR4457266 | 2nd_leaf | DAH44 | 2.35 | MC |
| SRR358795 | callus | wt | 2.82 | MC |
| SRR358796 | callus | wt | 2.64 | MC |
| SRR358797 | callus | wt | 2.11 | MC |
| SRR358798 | callus | wt | 3.38 | MC |
| SRR5560727 | caryopsis | wild_type | 1.39 | MC |
| SRR5560728 | caryopsis | wild_type | 1.96 | MC |
| SRR5560729 | caryopsis | wild_type | 2.49 | MC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 1.73 | MC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 0.47 | MC |
| SRR7265400 | coleoptile | 2dA | 3.22 | MC |
| SRR7265402 | coleoptile | 2dA | 3.06 | MC |
| SRR7265406 | coleoptile | 3dA | 1.40 | MC |
| SRR7265410 | coleoptile | 3dN | 0.33 | MC |
| SRR7265412 | coleoptile | 4dA | 2.42 | MC |
| SRR7265413 | coleoptile | 4dA | 3.93 | MC |
| SRR7265418 | coleoptile | 3dN1dA | 3.35 | MC |
| SRR7265419 | coleoptile | 3dN1dA | 3.82 | MC |
| SRR7265420 | coleoptile | 3dN1dA | 3.10 | MC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 0.74 | MC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 0.38 | MC |
| SRR4104637 | crown | "Zn_deficiency,8_days_of_treatment" | 0.47 | MC |
| SRR4104638 | crown | "Zn_deficiency,8_days_of_treatment" | 1.80 | MC |
| SRR4104647 | crown | "Zn_Efficient,8_days_of_treatment" | 0.43 | MC |
| SRR4104641 | crown | "Zn_deficiency,8_days_of_treatment" | 0.88 | MC |
| SRR4104644 | crown | "Zn_Efficient,8_days_of_treatment" | 1.77 | MC |
| SRR7265373 | embryo | dry seed 0 h | 1.52 | MC |
| SRR7265374 | embryo | dry seed 0 h | 3.48 | MC |
| SRR7265375 | embryo | dry seed 0 h | 1.21 | MC |
| SRR7265376 | embryo | 1hA | 1.44 | MC |
| SRR7265377 | embryo | 1hA | 1.57 | MC |
| SRR7265378 | embryo | 1hA | 1.15 | MC |
| SRR7265379 | embryo | 1hN | 1.69 | MC |
| SRR7265380 | embryo | 1hN | 1.37 | MC |
| SRR7265381 | embryo | 1hN | 1.37 | MC |
| SRR7265382 | embryo | 3hA | 0.95 | MC |
| SRR7265383 | embryo | 3hA | 0.79 | MC |
| SRR7265384 | embryo | 3hA | 1.41 | MC |
| SRR7265385 | embryo | 3hN | 1.66 | MC |
| SRR7265386 | embryo | 3hN | 1.69 | MC |
| SRR7265387 | embryo | 3hN | 1.24 | MC |
| SRR7265388 | embryo | 12hA | 1.05 | MC |
| SRR7265389 | embryo | 12hA | 1.14 | MC |
| SRR7265390 | embryo | 12hA | 0.91 | MC |
| SRR7265394 | embryo | 24hA | 2.28 | MC |
| SRR7265395 | embryo | 24hA | 1.38 | MC |
| SRR7265396 | embryo | 24hA | 1.55 | MC |
| SRR4457231 | flag_leaf | DAH4 | 2.46 | MC |
| SRR4457243 | flag_leaf | DAH36 | 1.82 | MC |
| SRR4457244 | flag_leaf | DAH36 | 0.98 | MC |
| SRR4457245 | flag_leaf | DAH36 | 1.94 | MC |
| SRR4457246 | flag_leaf | DAH44 | 1.88 | MC |
| SRR4457248 | flag_leaf | DAH44 | 1.74 | MC |
| SRR1213690 | flower | wt(flower buds) | 1.18 | MC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 0.72 | MC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 3.21 | MC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 4.37 | MC |
| SRR2922622 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 2.56 | MC |
| SRR2922623 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 0.95 | MC |
| SRR2922624 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 1.49 | MC |
| SRR1952778 | leaf | 48_hrs_after_inoculation_with_BLS256 | 1.38 | MC |
| SRR1952779 | leaf | 48_hrs_after_inoculation_with_BLS256 | 1.38 | MC |
| SRR1952780 | leaf | 48_hrs_after_inoculation_with_BLS256 | 1.24 | MC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 4.30 | MC |
| SRR1952782 | leaf | 48_hrs_after_inoculation_with_BLS279 | 6.17 | MC |
| SRR1952783 | leaf | 48_hrs_after_inoculation_with_BLS279 | 1.32 | MC |
| SRR1952786 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 2.71 | MC |
| SRR1952787 | leaf | 48_hrs_after_inoculation_with_B8_12 | 1.27 | MC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 1.64 | MC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 1.26 | MC |
| SRR1952791 | leaf | 48_hrs_after_inoculation_with_L8 | 1.28 | MC |
| SRR1952792 | leaf | 48_hrs_after_inoculation_with_L8 | 3.50 | MC |
| SRR1952794 | leaf | 48_hrs_after_inoculation_with_RS105 | 2.01 | MC |
| SRR1952795 | leaf | 48_hrs_after_inoculation_with_RS105 | 1.67 | MC |
| SRR1952796 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 2.57 | MC |
| SRR1952797 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 1.52 | MC |
| SRR1952798 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 1.39 | MC |
| SRR1952799 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 2.33 | MC |
| SRR1952800 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 2.01 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 1.53 | MC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 3.90 | MC |
| SRR1952803 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 2.77 | MC |
| SRR1952804 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 1.50 | MC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 1.19 | MC |
| SRR1952808 | leaf | 48_hrs_after_mock_inoculation | 2.95 | MC |
| SRR1952810 | leaf | 48_hrs_after_mock_inoculation | 3.28 | MC |
| SRR6417969 | leaf | H2O_control | 3.33 | MC |
| SRR8611900 | leaf | Non-inoculated | 1.79 | MC |
| SRR8611901 | leaf | Non-inoculated | 0.64 | MC |
| SRR8611902 | leaf | Non-inoculated | 0.97 | MC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 0.42 | MC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 0.49 | MC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 0.91 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 2.91 | MC |
| SRR1213692 | leaf | wt | 1.31 | MC |
| SRR1213693 | leaf | wt | 0.81 | MC |
| SRR6502087 | leaf | 100 mM NaCl | 3.07 | MC |
| SRR6053394 | leaf | ethanol solvent (untreated control) | 2.12 | MC |
| SRR6168973 | leaf | none (control) | 0.79 | MC |
| SRR6168974 | leaf | none (control) | 1.34 | MC |
| SRR6168976 | leaf | 0.5% Na2CO3 solution for 36h | 1.14 | MC |
| SRR6168981 | leaf | none (control) | 1.93 | MC |
| SRR6168983 | leaf | 0.5% Na2CO3 solution for 36h | 0.82 | MC |
| SRR5110432 | panicle | Dawn | 2.26 | MC |
| SRR5110440 | panicle | Dawn + 7h | 2.25 | MC |
| SRR5278374 | pistil | "Balilla,S1" | 1.49 | MC |
| SRR5278376 | pistil | "Balilla,S2" | 3.63 | MC |
| SRR5278377 | pistil | "Balilla,S2" | 2.54 | MC |
| SRR5278378 | pistil | "Balilla,S3" | 1.76 | MC |
| SRR5278379 | pistil | "Balilla,S3" | 0.91 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 4.77 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 2.62 | MC |
| SRR5126153 | root | "mock,7_days" | 0.70 | MC |
| SRR5126155 | root | "mock,7_days" | 1.30 | MC |
| SRR5126157 | root | "mock,7_days" | 0.94 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 2.54 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 0.54 | MC |
| SRR5126165 | root | "mock,14_days" | 0.91 | MC |
| SRR5126169 | root | "mock,14_days" | 1.98 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 1.72 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 0.35 | MC |
| SRR3472900 | root | nontransgenic_rice_plant | 1.26 | MC |
| SRR1213694 | root | wt | 1.34 | MC |
| SRR4947492 | root | Al | 4.62 | MC |
| SRR4947500 | root | Al | 2.74 | MC |
| SRR4947503 | root | control | 0.48 | MC |
| SRR4947508 | root | Al | 0.74 | MC |
| SRR6441554 | seedling | wild_type | 1.68 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 13.58 | MC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 0.91 | MC |
| SRR5796941 | shoot | "Control,22C for 10 min" | 0.94 | MC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 1.78 | MC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 1.76 | MC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 1.25 | MC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 1.29 | MC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 1.52 | MC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 1.82 | MC |
| SRR7760291 | spikelet | control condition (29C) for 7 hrs | 4.11 | MC |
| SRR7760292 | spikelet | control condition (29C) for 7 hrs | 2.96 | MC |
| SRR7760295 | spikelet | high temperature treatment (38C) for 7 hrs | 1.14 | MC |
| SRR7760296 | spikelet | high temperature treatment (38C) for 7 hrs | 1.85 | MC |
| SRR7760297 | spikelet | control condition (29C) for 7 hrs | 3.18 | MC |
| SRR7760298 | spikelet | control condition (29C) for 7 hrs | 1.56 | MC |
| SRR7760301 | spikelet | high temperature treatment (38C) for 7 hrs | 1.72 | MC |