| SRR4457250 | 2nd_leaf | DAH4 | 0.68 | MC |
| SRR4457251 | 2nd_leaf | DAH4 | 0.27 | MC |
| SRR4457252 | 2nd_leaf | DAH12 | 0.32 | MC |
| SRR4457253 | 2nd_leaf | DAH12 | 0.51 | MC |
| SRR4457254 | 2nd_leaf | DAH12 | 0.30 | MC |
| SRR4457255 | 2nd_leaf | DAH20 | 0.54 | MC |
| SRR4457257 | 2nd_leaf | DAH20 | 0.40 | MC |
| SRR6320473 | carpel | wt | 1.44 | MC |
| SRR6320498 | carpel | wt | 1.15 | MC |
| SRR5560727 | caryopsis | wild_type | 0.33 | MC |
| SRR5560728 | caryopsis | wild_type | 0.54 | MC |
| SRR5560729 | caryopsis | wild_type | 0.43 | MC |
| SRR7265401 | coleoptile | 2dA | 3.37 | MC |
| SRR7265406 | coleoptile | 3dA | 2.98 | MC |
| SRR7265407 | coleoptile | 3dA | 2.79 | MC |
| SRR7265408 | coleoptile | 3dA | 1.79 | MC |
| SRR7265409 | coleoptile | 3dN | 3.36 | MC |
| SRR7265410 | coleoptile | 3dN | 3.09 | MC |
| SRR7265411 | coleoptile | 3dN | 2.64 | MC |
| SRR7265412 | coleoptile | 4dA | 1.71 | MC |
| SRR7265413 | coleoptile | 4dA | 3.91 | MC |
| SRR7265414 | coleoptile | 4dA | 2.95 | MC |
| SRR7265415 | coleoptile | 4dN | 3.55 | MC |
| SRR7265416 | coleoptile | 4dN | 3.34 | MC |
| SRR7265417 | coleoptile | 4dN | 3.79 | MC |
| SRR7265418 | coleoptile | 3dN1dA | 2.96 | MC |
| SRR7265420 | coleoptile | 3dN1dA | 3.83 | MC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 0.52 | MC |
| SRR4104640 | crown | "Zn_deficiency,8_days_of_treatment" | 0.45 | MC |
| SRR7265373 | embryo | dry seed 0 h | 2.62 | MC |
| SRR7265374 | embryo | dry seed 0 h | 2.24 | MC |
| SRR7265375 | embryo | dry seed 0 h | 1.31 | MC |
| SRR7265376 | embryo | 1hA | 2.25 | MC |
| SRR7265377 | embryo | 1hA | 2.33 | MC |
| SRR7265378 | embryo | 1hA | 2.21 | MC |
| SRR7265379 | embryo | 1hN | 2.17 | MC |
| SRR7265380 | embryo | 1hN | 2.72 | MC |
| SRR7265381 | embryo | 1hN | 2.09 | MC |
| SRR7265383 | embryo | 3hA | 4.50 | MC |
| SRR7265384 | embryo | 3hA | 3.98 | MC |
| SRR7265385 | embryo | 3hN | 2.52 | MC |
| SRR7265386 | embryo | 3hN | 1.83 | MC |
| SRR7265387 | embryo | 3hN | 2.27 | MC |
| SRR7265394 | embryo | 24hA | 5.01 | MC |
| SRR7265395 | embryo | 24hA | 5.03 | MC |
| SRR2338868 | endosprem | high_temperature | 0.42 | MC |
| SRR2338869 | endosprem | high_temperature | 0.96 | MC |
| SRR4457232 | flag_leaf | DAH4 | 0.55 | MC |
| SRR4457233 | flag_leaf | DAH4 | 0.60 | MC |
| SRR4457235 | flag_leaf | DAH12 | 0.36 | MC |
| SRR4457236 | flag_leaf | DAH12 | 0.29 | MC |
| SRR4457237 | flag_leaf | DAH20 | 0.30 | MC |
| SRR4457242 | flag_leaf | DAH28 | 0.34 | MC |
| SRR4457243 | flag_leaf | DAH36 | 0.47 | MC |
| SRR4457245 | flag_leaf | DAH36 | 0.47 | MC |
| SRR1213690 | flower | wt(flower buds) | 0.29 | MC |
| SRR8060835 | leaf | wild_type | 0.24 | MC |
| SRR8060836 | leaf | wild_type | 0.49 | MC |
| SRR8240825 | leaf | wild_type | 0.29 | MC |
| SRR2922622 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 0.59 | MC |
| SRR2922624 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 0.58 | MC |
| SRR1952778 | leaf | 48_hrs_after_inoculation_with_BLS256 | 0.48 | MC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 0.57 | MC |
| SRR1952783 | leaf | 48_hrs_after_inoculation_with_BLS279 | 0.53 | MC |
| SRR1952784 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 0.59 | MC |
| SRR1952786 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 0.74 | MC |
| SRR1952787 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.73 | MC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.33 | MC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.39 | MC |
| SRR1952790 | leaf | 48_hrs_after_inoculation_with_L8 | 0.48 | MC |
| SRR1952791 | leaf | 48_hrs_after_inoculation_with_L8 | 0.75 | MC |
| SRR1952792 | leaf | 48_hrs_after_inoculation_with_L8 | 0.41 | MC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.38 | MC |
| SRR1952796 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 0.49 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 0.50 | MC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 0.80 | MC |
| SRR1952804 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 0.43 | MC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.61 | MC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.41 | MC |
| SRR1952808 | leaf | 48_hrs_after_mock_inoculation | 0.53 | MC |
| SRR1761790 | leaf | "wild_type,control,2" | 0.61 | MC |
| SRR1761782 | leaf | "wild_type,control,1" | 0.62 | MC |
| SRR1761530 | leaf | control | 0.66 | MC |
| SRR3209769 | leaf | Watered;Long_Day | 0.24 | MC |
| SRR3209771 | leaf | Drought;Long_Day | 0.66 | MC |
| SRR3209772 | leaf | Drought;Long_Day | 0.29 | MC |
| SRR3209774 | leaf | Watered;Short_Day | 0.27 | MC |
| SRR3209775 | leaf | Drought;Short_Day | 0.65 | MC |
| SRR3209776 | leaf | Drought;Short_Day | 0.55 | MC |
| SRR3209778 | leaf | Drought;Long_Day | 0.84 | MC |
| SRR3209780 | leaf | Drought;Short_Day | 0.70 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 0.36 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 0.20 | MC |
| SRR1213692 | leaf | wt | 0.50 | MC |
| SRR1213693 | leaf | wt | 0.27 | MC |
| SRR6502088 | leaf | control | 0.36 | MC |
| SRR6502097 | leaf | 100 mM NaCl | 0.39 | MC |
| SRR6502098 | leaf | 100 mM NaCl | 0.59 | MC |
| SRR5856928 | leaf | control | 0.21 | MC |
| SRR5856930 | leaf | salt | 0.18 | MC |
| SRR5856931 | leaf | salt | 0.31 | MC |
| SRR5856933 | leaf | control | 0.32 | MC |
| SRR5856934 | leaf | control | 0.35 | MC |
| SRR5856936 | leaf | salt | 0.33 | MC |
| SRR6168979 | leaf | none (control) | 0.47 | MC |
| SRR6168983 | leaf | 0.5% Na2CO3 solution for 36h | 0.51 | MC |
| SRR6168984 | leaf | 0.5% Na2CO3 solution for 36h | 0.25 | MC |
| SRR8582888 | panicle | AM | 0.33 | MC |
| SRR8582890 | panicle | AM | 0.42 | MC |
| SRR8582893 | panicle | PM | 0.29 | MC |
| SRR5110434 | panicle | Dawn + 3.5h | 0.57 | MC |
| SRR5110436 | panicle | Dawn + 3.5h | 0.67 | MC |
| SRR5110450 | panicle | Dawn + 14h | 0.72 | MC |
| SRR5110458 | panicle | Dawn + 21h | 0.53 | MC |
| SRR5110459 | panicle | Dawn + 21h | 0.58 | MC |
| SRR5110460 | panicle | Dawn + 21h | 0.47 | MC |
| SRR1213696 | endosprem | wt(milk grains) | 0.27 | MC |
| SRR1213697 | endosprem | wt(mature seeds) | 0.27 | MC |
| SRR1633182 | panicle | WT | 1.85 | MC |
| SRR1633185 | panicle | WT | 1.80 | MC |
| SRR5278376 | pistil | "Balilla,S2" | 0.33 | MC |
| SRR5278378 | pistil | "Balilla,S3" | 0.49 | MC |
| SRR5126147 | root | "mock,1_day" | 1.40 | MC |
| SRR5126148 | root | "mock,1_day" | 0.82 | MC |
| SRR5126149 | root | "mock,1_day" | 1.58 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 1.33 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 1.24 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 1.12 | MC |
| SRR5126153 | root | "mock,7_days" | 0.54 | MC |
| SRR5126155 | root | "mock,7_days" | 0.77 | MC |
| SRR5126157 | root | "mock,7_days" | 1.91 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 0.49 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 0.79 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 0.60 | MC |
| SRR5126165 | root | "mock,14_days" | 1.71 | MC |
| SRR5126167 | root | "mock,14_days" | 0.94 | MC |
| SRR5126169 | root | "mock,14_days" | 0.82 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 0.36 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 0.49 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 0.37 | MC |
| SRR1213694 | root | wt | 0.30 | MC |
| SRR1213695 | root | wt | 0.52 | MC |
| SRR4947485 | root | Al | 0.69 | MC |
| SRR4947487 | root | control | 0.58 | MC |
| SRR4947497 | root | control | 0.77 | MC |
| SRR4947502 | root | control | 0.58 | MC |
| SRR4947503 | root | control | 0.58 | MC |
| SRR4947505 | root | control | 0.54 | MC |
| SRR6502091 | root | 100 mM NaCl | 0.60 | MC |
| SRR6502092 | root | 100 mM NaCl | 0.38 | MC |
| SRR6502093 | root | 100 mM NaCl | 0.53 | MC |
| SRR6502094 | root | control | 0.47 | MC |
| SRR6502095 | root | control | 0.54 | MC |
| SRR6502096 | root | control | 0.42 | MC |
| SRR6502106 | root | control | 0.42 | MC |
| SRR6502108 | root | control | 0.58 | MC |
| SRR1740436 | root_differentiation_zone | wt | 0.27 | MC |
| SRR1740432 | root_elongation_zone | wt | 0.41 | MC |
| SRR6441555 | seedling | wild_type | 0.43 | MC |
| SRR2154086 | seedling | wt | 0.40 | MC |
| SRR2154082 | seedling | wt | 0.32 | MC |
| SRR2154084 | seedling | wt | 0.45 | MC |
| SRR2154085 | seedling | wt | 0.50 | MC |
| SRR2154087 | seedling | wt | 0.54 | MC |
| SRR3098741 | seedling | wt | 0.45 | MC |
| SRR3098742 | seedling | wt | 0.36 | MC |
| SRR3098743 | seedling | wt | 0.47 | MC |
| SRR2857719 | seedling | drought_stress_0h | 0.53 | MC |
| SRR2857721 | seedling | drought_stress_6h | 0.85 | MC |
| SRR358791 | seedling | wt | 0.58 | MC |
| SRR1288363 | shoot | "none,3_days_post_infection" | 1.36 | MC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 3.22 | MC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 3.88 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 10.93 | MC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 6.08 | MC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 6.09 | MC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 4.15 | MC |
| SRR4841741 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 2.58 | MC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 3.95 | MC |
| SRR4841743 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 4.09 | MC |
| SRR3950246 | shoot | Drought_during_3_days;Fr13_inoculated | 0.27 | MC |
| SRR3950248 | shoot | No_DIS;Fr13_inoculated | 0.20 | MC |
| SRR5796941 | shoot | "Control,22C for 10 min" | 0.54 | MC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 0.51 | MC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 0.42 | MC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 0.37 | MC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 0.55 | MC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 0.76 | MC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 0.72 | MC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 0.60 | MC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 0.72 | MC |
| SRR5796954 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 1.77 | MC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 1.41 | MC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 1.83 | MC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 2.33 | MC |
| SRR7760293 | spikelet | control condition (29C) for 7 hrs | 0.64 | MC |
| SRR7760294 | spikelet | high temperature treatment (38C) for 7 hrs | 0.46 | MC |
| SRR7760295 | spikelet | high temperature treatment (38C) for 7 hrs | 0.51 | MC |
| SRR7760301 | spikelet | high temperature treatment (38C) for 7 hrs | 0.41 | MC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 0.28 | MC |