| SRR4457253 | 2nd_leaf | DAH12 | 0.39 | MC |
| SRR4457255 | 2nd_leaf | DAH20 | 0.80 | MC |
| SRR4457256 | 2nd_leaf | DAH20 | 0.76 | MC |
| SRR4457258 | 2nd_leaf | DAH28 | 1.33 | MC |
| SRR4457259 | 2nd_leaf | DAH28 | 0.87 | MC |
| SRR4457260 | 2nd_leaf | DAH28 | 0.47 | MC |
| SRR4457264 | 2nd_leaf | DAH44 | 1.59 | MC |
| SRR4457266 | 2nd_leaf | DAH44 | 0.92 | MC |
| SRR3745125 | anther | wt | 1.82 | MC |
| SRR3745126 | anther | wt | 0.58 | MC |
| SRR6320473 | carpel | wt | 2.32 | MC |
| SRR5560727 | caryopsis | wild_type | 0.55 | MC |
| SRR5560728 | caryopsis | wild_type | 0.32 | MC |
| SRR5560729 | caryopsis | wild_type | 1.02 | MC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 1.39 | MC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 1.32 | MC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 1.24 | MC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 1.27 | MC |
| SRR7265409 | coleoptile | 3dN | 4.20 | MC |
| SRR7265410 | coleoptile | 3dN | 3.26 | MC |
| SRR7265411 | coleoptile | 3dN | 3.35 | MC |
| SRR7265412 | coleoptile | 4dA | 3.13 | MC |
| SRR7265414 | coleoptile | 4dA | 3.73 | MC |
| SRR7265415 | coleoptile | 4dN | 2.91 | MC |
| SRR7265417 | coleoptile | 4dN | 2.21 | MC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 0.85 | MC |
| SRR4104637 | crown | "Zn_deficiency,8_days_of_treatment" | 0.49 | MC |
| SRR4104638 | crown | "Zn_deficiency,8_days_of_treatment" | 0.62 | MC |
| SRR4104647 | crown | "Zn_Efficient,8_days_of_treatment" | 0.49 | MC |
| SRR4104640 | crown | "Zn_deficiency,8_days_of_treatment" | 0.42 | MC |
| SRR4104641 | crown | "Zn_deficiency,8_days_of_treatment" | 0.56 | MC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 0.63 | MC |
| SRR4104644 | crown | "Zn_Efficient,8_days_of_treatment" | 0.58 | MC |
| SRR4104646 | crown | "Zn_Efficient,8_days_of_treatment" | 1.01 | MC |
| SRR7265385 | embryo | 3hN | 3.46 | MC |
| SRR7265392 | embryo | 12hN | 4.25 | MC |
| SRR7265393 | embryo | 12hN | 4.56 | MC |
| SRR2338867 | endosprem | control | 0.62 | MC |
| SRR2338869 | endosprem | high_temperature | 1.08 | MC |
| SRR4457234 | flag_leaf | DAH12 | 0.24 | MC |
| SRR4457237 | flag_leaf | DAH20 | 0.52 | MC |
| SRR4457238 | flag_leaf | DAH20 | 0.39 | MC |
| SRR4457240 | flag_leaf | DAH28 | 1.02 | MC |
| SRR4457241 | flag_leaf | DAH28 | 0.41 | MC |
| SRR4457242 | flag_leaf | DAH28 | 0.99 | MC |
| SRR4457243 | flag_leaf | DAH36 | 0.63 | MC |
| SRR4457246 | flag_leaf | DAH44 | 1.30 | MC |
| SRR4457247 | flag_leaf | DAH44 | 2.21 | MC |
| SRR4457248 | flag_leaf | DAH44 | 1.29 | MC |
| SRR1213690 | flower | wt(flower buds) | 0.65 | MC |
| SRR1213691 | flower | wt | 0.42 | MC |
| SRR8240824 | leaf | wild_type | 0.24 | MC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 0.68 | MC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 0.70 | MC |
| SRR2922623 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 1.58 | MC |
| SRR2922624 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 0.99 | MC |
| SRR1952778 | leaf | 48_hrs_after_inoculation_with_BLS256 | 1.06 | MC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 1.10 | MC |
| SRR1952783 | leaf | 48_hrs_after_inoculation_with_BLS279 | 1.25 | MC |
| SRR1952785 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 0.83 | MC |
| SRR1952786 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 1.07 | MC |
| SRR1952787 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.84 | MC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 1.11 | MC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 1.42 | MC |
| SRR1952790 | leaf | 48_hrs_after_inoculation_with_L8 | 1.36 | MC |
| SRR1952792 | leaf | 48_hrs_after_inoculation_with_L8 | 0.41 | MC |
| SRR1952794 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.65 | MC |
| SRR1952797 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 1.30 | MC |
| SRR1952798 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 1.21 | MC |
| SRR1952799 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 5.97 | MC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 0.91 | MC |
| SRR1952803 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 1.14 | MC |
| SRR1952804 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 0.75 | MC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.86 | MC |
| SRR1952807 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.57 | MC |
| SRR1761788 | leaf | "wild_type,drought,2" | 2.12 | MC |
| SRR1761789 | leaf | "wild_type,drought,2" | 2.53 | MC |
| SRR1761780 | leaf | "wild_type,drought,1" | 2.12 | MC |
| SRR1761781 | leaf | "wild_type,drought,1" | 2.53 | MC |
| SRR1761528 | leaf | drought | 2.12 | MC |
| SRR1761529 | leaf | drought | 2.53 | MC |
| SRR504365 | leaf | wt | 0.38 | MC |
| SRR3209770 | leaf | Watered;Long_Day | 1.02 | MC |
| SRR3209771 | leaf | Drought;Long_Day | 1.58 | MC |
| SRR3209772 | leaf | Drought;Long_Day | 1.03 | MC |
| SRR3209775 | leaf | Drought;Short_Day | 1.43 | MC |
| SRR3209776 | leaf | Drought;Short_Day | 1.74 | MC |
| SRR3209777 | leaf | Watered;Long_Day | 0.54 | MC |
| SRR3209778 | leaf | Drought;Long_Day | 2.20 | MC |
| SRR3209780 | leaf | Drought;Short_Day | 1.58 | MC |
| SRR8611900 | leaf | Non-inoculated | 0.35 | MC |
| SRR8611901 | leaf | Non-inoculated | 0.54 | MC |
| SRR8611902 | leaf | Non-inoculated | 0.42 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 0.27 | MC |
| SRR1213693 | leaf | wt | 0.40 | MC |
| SRR6502085 | leaf | 100 mM NaCl | 0.80 | MC |
| SRR6502086 | leaf | 100 mM NaCl | 1.33 | MC |
| SRR6502090 | leaf | control | 0.55 | MC |
| SRR6502102 | leaf | control | 0.59 | MC |
| SRR5856928 | leaf | control | 1.05 | MC |
| SRR5856929 | leaf | control | 0.57 | MC |
| SRR5856933 | leaf | control | 0.60 | MC |
| SRR5856934 | leaf | control | 0.32 | MC |
| SRR5856936 | leaf | salt | 0.13 | MC |
| SRR5856937 | leaf | salt | 0.14 | MC |
| SRR6053397 | leaf | gibberellic acid (GA) | 2.87 | MC |
| SRR6168973 | leaf | none (control) | 0.28 | MC |
| SRR6168974 | leaf | none (control) | 2.20 | MC |
| SRR6168975 | leaf | none (control) | 0.38 | MC |
| SRR6168978 | leaf | 0.5% Na2CO3 solution for 36h | 0.42 | MC |
| SRR6168979 | leaf | none (control) | 0.79 | MC |
| SRR6168981 | leaf | none (control) | 0.56 | MC |
| SRR6168982 | leaf | 0.5% Na2CO3 solution for 36h | 0.56 | MC |
| SRR6168983 | leaf | 0.5% Na2CO3 solution for 36h | 0.20 | MC |
| SRR6168984 | leaf | 0.5% Na2CO3 solution for 36h | 0.36 | MC |
| SRR5110429 | panicle | Dawn | 0.74 | MC |
| SRR5110431 | panicle | Dawn | 1.39 | MC |
| SRR4947496 | root | control | 0.57 | MC |
| SRR5110435 | panicle | Dawn + 3.5h | 0.54 | MC |
| SRR5110437 | panicle | Dawn + 7h | 0.51 | MC |
| SRR5110439 | panicle | Dawn + 7h | 1.10 | MC |
| SRR5110440 | panicle | Dawn + 7h | 1.18 | MC |
| SRR5110441 | panicle | Dawn + 10.5h | 0.69 | MC |
| SRR5110442 | panicle | Dawn + 10.5h | 1.12 | MC |
| SRR5110445 | panicle | Dusk | 0.87 | MC |
| SRR5110446 | panicle | Dusk | 1.21 | MC |
| SRR5110448 | panicle | Dusk | 1.16 | MC |
| SRR5110450 | panicle | Dawn + 14h | 0.62 | MC |
| SRR5110451 | panicle | Dawn + 14h | 0.46 | MC |
| SRR5110452 | panicle | Dawn + 14h | 0.67 | MC |
| SRR5110453 | panicle | Dawn + 17.5h | 1.25 | MC |
| SRR5110454 | panicle | Dawn + 17.5h | 0.90 | MC |
| SRR5110456 | panicle | Dawn + 17.5h | 1.03 | MC |
| SRR5110457 | panicle | Dawn + 21h | 0.64 | MC |
| SRR5110458 | panicle | Dawn + 21h | 0.69 | MC |
| SRR5110459 | panicle | Dawn + 21h | 0.72 | MC |
| SRR1213696 | endosprem | wt(milk grains) | 0.18 | MC |
| SRR1213697 | endosprem | wt(mature seeds) | 0.71 | MC |
| SRR1633182 | panicle | WT | 2.27 | MC |
| SRR1633185 | panicle | WT | 1.76 | MC |
| SRR5278374 | pistil | "Balilla,S1" | 1.02 | MC |
| SRR5278375 | pistil | "Balilla,S1" | 1.39 | MC |
| SRR5278376 | pistil | "Balilla,S2" | 0.98 | MC |
| SRR5278377 | pistil | "Balilla,S2" | 1.02 | MC |
| SRR5278379 | pistil | "Balilla,S3" | 0.52 | MC |
| SRR5126147 | root | "mock,1_day" | 0.87 | MC |
| SRR5126148 | root | "mock,1_day" | 0.55 | MC |
| SRR5126149 | root | "mock,1_day" | 1.75 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 1.31 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 0.45 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 0.71 | MC |
| SRR5126153 | root | "mock,7_days" | 0.67 | MC |
| SRR5126155 | root | "mock,7_days" | 1.80 | MC |
| SRR5126157 | root | "mock,7_days" | 0.83 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 2.08 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 1.76 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 1.15 | MC |
| SRR5126165 | root | "mock,14_days" | 1.06 | MC |
| SRR5126167 | root | "mock,14_days" | 2.58 | MC |
| SRR5126169 | root | "mock,14_days" | 1.43 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 2.11 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 1.79 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 0.82 | MC |
| SRR1213694 | root | wt | 0.29 | MC |
| SRR1213695 | root | wt | 0.52 | MC |
| SRR4947481 | root | control | 0.90 | MC |
| SRR4947482 | root | Al | 0.54 | MC |
| SRR4947483 | root | Al | 0.48 | MC |
| SRR4947484 | root | Al | 0.60 | MC |
| SRR4947489 | root | control | 0.77 | MC |
| SRR4947500 | root | Al | 1.08 | MC |
| SRR4947503 | root | control | 0.77 | MC |
| SRR4947506 | root | Al | 0.52 | MC |
| SRR4947509 | root | Al | 0.82 | MC |
| SRR6502091 | root | 100 mM NaCl | 1.68 | MC |
| SRR6502092 | root | 100 mM NaCl | 0.47 | MC |
| SRR6502093 | root | 100 mM NaCl | 0.54 | MC |
| SRR6502103 | root | 100 mM NaCl | 0.77 | MC |
| SRR6502104 | root | 100 mM NaCl | 0.64 | MC |
| SRR6502106 | root | control | 1.71 | MC |
| SRR1740434 | root_differentiation_zone | wt | 0.77 | MC |
| SRR1740436 | root_differentiation_zone | wt | 0.54 | MC |
| SRR1740431 | root_elongation_zone | wt | 0.57 | MC |
| SRR1740432 | root_elongation_zone | wt | 0.46 | MC |
| SRR1740433 | root_elongation_zone | wt | 0.93 | MC |
| SRR1740429 | root_meristematic_zone | wt | 0.66 | MC |
| SRR1740430 | root_meristematic_zone | wt | 0.26 | MC |
| SRR6441554 | seedling | wild_type | 0.40 | MC |
| SRR2154082 | seedling | wt | 1.37 | MC |
| SRR2154083 | seedling | wt | 1.55 | MC |
| SRR2154084 | seedling | wt | 1.03 | MC |
| SRR2154085 | seedling | wt | 0.77 | MC |
| SRR2154087 | seedling | wt | 0.47 | MC |
| SRR3098742 | seedling | wt | 0.42 | MC |
| SRR3098743 | seedling | wt | 0.28 | MC |
| SRR2857720 | seedling | drought_stress_1h | 0.96 | MC |
| SRR2857721 | seedling | drought_stress_6h | 1.49 | MC |
| SRR1944582 | seedling | "with_chilling_teatment_(4C,33h)" | 1.86 | MC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 2.69 | MC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 3.15 | MC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 7.76 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 6.87 | MC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 10.23 | MC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 5.06 | MC |
| SRR4841741 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 2.89 | MC |
| SRR4841743 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 3.85 | MC |
| SRR3950244 | shoot | Drought_during_3_days;Fr13_inoculated | 0.43 | MC |
| SRR3950245 | shoot | Drought_during_3_days;Fr13_inoculated | 0.67 | MC |
| SRR3950246 | shoot | Drought_during_3_days;Fr13_inoculated | 0.82 | MC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 0.43 | MC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 0.50 | MC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 0.60 | MC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 1.03 | MC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 1.08 | MC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 0.73 | MC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 1.76 | MC |
| SRR5796954 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 1.04 | MC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 0.84 | MC |
| SRR5052708 | shoot_apical_meristem | 0_days_after_shift | 0.74 | MC |
| SRR5052709 | shoot_apical_meristem | 0_days_after_shift | 1.00 | MC |
| SRR5052710 | shoot_apical_meristem | 0_days_after_shift | 1.21 | MC |
| SRR5052713 | shoot_apical_meristem | 4_days_after_shift | 0.87 | MC |
| SRR5052719 | shoot_apical_meristem | 8_days_after_shift | 0.64 | MC |
| SRR5052724 | shoot_apical_meristem | 0_days_after_shift | 1.13 | MC |
| SRR5052726 | shoot_apical_meristem | 0_days_after_shift | 0.87 | MC |
| SRR5052727 | shoot_apical_meristem | 4_days_after_shift | 0.74 | MC |
| SRR5052731 | shoot_apical_meristem | 8_days_after_shift | 0.81 | MC |
| SRR1617549 | shoot_apical_meristem | no collect | 1.45 | MC |
| SRR1617554 | shoot_apical_meristem | no collect | 1.27 | MC |
| SRR1617559 | shoot_apical_meristem | no collect | 1.61 | MC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 0.36 | MC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 0.62 | MC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 0.53 | MC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 0.64 | MC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 1.24 | MC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 0.83 | MC |
| SRR7760292 | spikelet | control condition (29C) for 7 hrs | 1.23 | MC |
| SRR7760294 | spikelet | high temperature treatment (38C) for 7 hrs | 1.00 | MC |
| SRR7760295 | spikelet | high temperature treatment (38C) for 7 hrs | 0.35 | MC |
| SRR7760299 | spikelet | control condition (29C) for 7 hrs | 0.82 | MC |
| SRR7760301 | spikelet | high temperature treatment (38C) for 7 hrs | 0.35 | MC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 0.32 | MC |