| SRR4457249 | 2nd_leaf | DAH4 | 1.99 | MC |
| SRR4457250 | 2nd_leaf | DAH4 | 1.15 | MC |
| SRR4457251 | 2nd_leaf | DAH4 | 0.57 | MC |
| SRR4457252 | 2nd_leaf | DAH12 | 0.96 | MC |
| SRR4457253 | 2nd_leaf | DAH12 | 0.64 | MC |
| SRR4457255 | 2nd_leaf | DAH20 | 1.61 | MC |
| SRR4457256 | 2nd_leaf | DAH20 | 1.32 | MC |
| SRR4457257 | 2nd_leaf | DAH20 | 0.66 | MC |
| SRR4457258 | 2nd_leaf | DAH28 | 1.53 | MC |
| SRR4457259 | 2nd_leaf | DAH28 | 1.50 | MC |
| SRR4457260 | 2nd_leaf | DAH28 | 1.19 | MC |
| SRR4457261 | 2nd_leaf | DAH36 | 2.05 | MC |
| SRR4457262 | 2nd_leaf | DAH36 | 2.34 | MC |
| SRR4457264 | 2nd_leaf | DAH44 | 1.18 | MC |
| SRR4457265 | 2nd_leaf | DAH44 | 1.23 | MC |
| SRR3745126 | anther | wt | 4.13 | MC |
| SRR358796 | callus | wt | 3.50 | MC |
| SRR358797 | callus | wt | 5.85 | MC |
| SRR6320498 | carpel | wt | 1.24 | MC |
| SRR7265408 | coleoptile | 3dA | 1.95 | MC |
| SRR7265412 | coleoptile | 4dA | 2.88 | MC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 1.06 | MC |
| SRR4104637 | crown | "Zn_deficiency,8_days_of_treatment" | 0.74 | MC |
| SRR4104640 | crown | "Zn_deficiency,8_days_of_treatment" | 0.56 | MC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 0.42 | MC |
| SRR4104643 | crown | "Zn_Efficient,8_days_of_treatment" | 0.82 | MC |
| SRR2338866 | endosprem | control | 2.78 | MC |
| SRR2338868 | endosprem | high_temperature | 0.94 | MC |
| SRR4457232 | flag_leaf | DAH4 | 1.12 | MC |
| SRR4457233 | flag_leaf | DAH4 | 0.76 | MC |
| SRR4457234 | flag_leaf | DAH12 | 0.31 | MC |
| SRR4457237 | flag_leaf | DAH20 | 0.25 | MC |
| SRR4457242 | flag_leaf | DAH28 | 0.42 | MC |
| SRR4457243 | flag_leaf | DAH36 | 0.65 | MC |
| SRR4457244 | flag_leaf | DAH36 | 0.95 | MC |
| SRR4457245 | flag_leaf | DAH36 | 1.05 | MC |
| SRR4457246 | flag_leaf | DAH44 | 2.99 | MC |
| SRR4457247 | flag_leaf | DAH44 | 0.82 | MC |
| SRR4457248 | flag_leaf | DAH44 | 1.99 | MC |
| SRR8240825 | leaf | wild_type | 2.23 | MC |
| SRR2922623 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 2.29 | MC |
| SRR1952778 | leaf | 48_hrs_after_inoculation_with_BLS256 | 3.31 | MC |
| SRR1952779 | leaf | 48_hrs_after_inoculation_with_BLS256 | 2.03 | MC |
| SRR1952782 | leaf | 48_hrs_after_inoculation_with_BLS279 | 3.74 | MC |
| SRR1952783 | leaf | 48_hrs_after_inoculation_with_BLS279 | 4.37 | MC |
| SRR1952785 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 3.63 | MC |
| SRR1952787 | leaf | 48_hrs_after_inoculation_with_B8_12 | 3.73 | MC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 3.19 | MC |
| SRR1952790 | leaf | 48_hrs_after_inoculation_with_L8 | 2.56 | MC |
| SRR1952791 | leaf | 48_hrs_after_inoculation_with_L8 | 4.02 | MC |
| SRR1952792 | leaf | 48_hrs_after_inoculation_with_L8 | 2.99 | MC |
| SRR1952794 | leaf | 48_hrs_after_inoculation_with_RS105 | 1.89 | MC |
| SRR1952796 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 5.17 | MC |
| SRR1952797 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 3.47 | MC |
| SRR1952800 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 4.31 | MC |
| SRR1952803 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 4.10 | MC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 4.19 | MC |
| SRR1952807 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 4.34 | MC |
| SRR1761789 | leaf | "wild_type,drought,2" | 2.25 | MC |
| SRR1761791 | leaf | "wild_type,control,2" | 1.78 | MC |
| SRR1761781 | leaf | "wild_type,drought,1" | 2.25 | MC |
| SRR1761783 | leaf | "wild_type,control,1" | 1.78 | MC |
| SRR1761529 | leaf | drought | 2.25 | MC |
| SRR1761531 | leaf | control | 1.78 | MC |
| SRR6417967 | leaf | H2O_control | 0.82 | MC |
| SRR6417969 | leaf | H2O_control | 1.07 | MC |
| SRR3209769 | leaf | Watered;Long_Day | 0.49 | MC |
| SRR3209771 | leaf | Drought;Long_Day | 1.26 | MC |
| SRR3209772 | leaf | Drought;Long_Day | 1.90 | MC |
| SRR3209775 | leaf | Drought;Short_Day | 1.14 | MC |
| SRR3209776 | leaf | Drought;Short_Day | 1.25 | MC |
| SRR3209777 | leaf | Watered;Long_Day | 0.83 | MC |
| SRR3209778 | leaf | Drought;Long_Day | 1.53 | MC |
| SRR5856933 | leaf | control | 0.20 | MC |
| SRR6053394 | leaf | ethanol solvent (untreated control) | 4.19 | MC |
| SRR6053395 | leaf | gibberellic acid (GA) | 3.48 | MC |
| SRR6053396 | leaf | gibberellic acid (GA) | 6.23 | MC |
| SRR6053397 | leaf | gibberellic acid (GA) | 6.98 | MC |
| SRR6168982 | leaf | 0.5% Na2CO3 solution for 36h | 1.46 | MC |
| SRR8582890 | panicle | AM | 0.26 | MC |
| SRR5110429 | panicle | Dawn | 0.87 | MC |
| SRR5110431 | panicle | Dawn | 1.92 | MC |
| SRR5110434 | panicle | Dawn + 3.5h | 1.59 | MC |
| SRR5110436 | panicle | Dawn + 3.5h | 1.32 | MC |
| SRR5110438 | panicle | Dawn + 7h | 2.37 | MC |
| SRR5110439 | panicle | Dawn + 7h | 2.95 | MC |
| SRR5110440 | panicle | Dawn + 7h | 2.73 | MC |
| SRR5110447 | panicle | Dusk | 4.15 | MC |
| SRR5110449 | panicle | Dawn + 14h | 5.16 | MC |
| SRR5110450 | panicle | Dawn + 14h | 3.23 | MC |
| SRR5110451 | panicle | Dawn + 14h | 3.14 | MC |
| SRR5110452 | panicle | Dawn + 14h | 5.22 | MC |
| SRR5110453 | panicle | Dawn + 17.5h | 3.02 | MC |
| SRR5110454 | panicle | Dawn + 17.5h | 3.15 | MC |
| SRR5110455 | panicle | Dawn + 17.5h | 2.02 | MC |
| SRR5110456 | panicle | Dawn + 17.5h | 3.02 | MC |
| SRR5110458 | panicle | Dawn + 21h | 0.58 | MC |
| SRR5110460 | panicle | Dawn + 21h | 2.32 | MC |
| SRR1213697 | endosprem | wt(mature seeds) | 1.09 | MC |
| SRR1633185 | panicle | WT | 0.99 | MC |
| SRR5278374 | pistil | "Balilla,S1" | 2.01 | MC |
| SRR5278375 | pistil | "Balilla,S1" | 1.63 | MC |
| SRR5278376 | pistil | "Balilla,S2" | 3.45 | MC |
| SRR5278377 | pistil | "Balilla,S2" | 4.08 | MC |
| SRR5126147 | root | "mock,1_day" | 0.42 | MC |
| SRR5126148 | root | "mock,1_day" | 1.31 | MC |
| SRR5126149 | root | "mock,1_day" | 1.44 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 3.47 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 1.05 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 1.90 | MC |
| SRR5126153 | root | "mock,7_days" | 1.03 | MC |
| SRR5126155 | root | "mock,7_days" | 3.03 | MC |
| SRR5126157 | root | "mock,7_days" | 1.84 | MC |
| SRR5126167 | root | "mock,14_days" | 1.68 | MC |
| SRR5126169 | root | "mock,14_days" | 4.32 | MC |
| SRR3472897 | root | nontransgenic_rice_plant | 1.25 | MC |
| SRR1213694 | root | wt | 1.02 | MC |
| SRR4947479 | root | control | 0.61 | MC |
| SRR4947480 | root | control | 1.64 | MC |
| SRR4947481 | root | control | 2.43 | MC |
| SRR4947484 | root | Al | 1.52 | MC |
| SRR4947485 | root | Al | 1.90 | MC |
| SRR4947488 | root | control | 0.77 | MC |
| SRR4947489 | root | control | 1.06 | MC |
| SRR4947493 | root | Al | 0.49 | MC |
| SRR4947494 | root | control | 0.97 | MC |
| SRR4947497 | root | control | 0.75 | MC |
| SRR4947500 | root | Al | 1.74 | MC |
| SRR4947503 | root | control | 1.36 | MC |
| SRR4947504 | root | control | 1.37 | MC |
| SRR4947505 | root | control | 1.07 | MC |
| SRR4947507 | root | Al | 1.44 | MC |
| SRR4947508 | root | Al | 0.51 | MC |
| SRR6502091 | root | 100 mM NaCl | 1.56 | MC |
| SRR6502092 | root | 100 mM NaCl | 2.63 | MC |
| SRR6502093 | root | 100 mM NaCl | 2.75 | MC |
| SRR6502094 | root | control | 2.28 | MC |
| SRR6502095 | root | control | 1.25 | MC |
| SRR6502105 | root | 100 mM NaCl | 1.89 | MC |
| SRR6502106 | root | control | 1.52 | MC |
| SRR6502108 | root | control | 1.23 | MC |
| SRR1740429 | root_meristematic_zone | wt | 0.49 | MC |
| SRR3098741 | seedling | wt | 1.44 | MC |
| SRR3098743 | seedling | wt | 2.16 | MC |
| SRR2857719 | seedling | drought_stress_0h | 3.24 | MC |
| SRR3950244 | shoot | Drought_during_3_days;Fr13_inoculated | 1.54 | MC |
| SRR3950247 | shoot | No_DIS;Fr13_inoculated | 0.37 | MC |
| SRR3950253 | shoot | No_DIS;_mock_inoculated | 1.76 | MC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 4.04 | MC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 3.08 | MC |
| SRR5052711 | shoot_apical_meristem | 4_days_after_shift | 0.96 | MC |
| SRR5052713 | shoot_apical_meristem | 4_days_after_shift | 1.17 | MC |
| SRR5052719 | shoot_apical_meristem | 8_days_after_shift | 0.98 | MC |
| SRR5052721 | shoot_apical_meristem | 12_days_after_shift | 1.31 | MC |
| SRR5052728 | shoot_apical_meristem | 4_days_after_shift | 1.27 | MC |
| SRR5052731 | shoot_apical_meristem | 8_days_after_shift | 1.27 | MC |
| SRR5052732 | shoot_apical_meristem | 8_days_after_shift | 1.01 | MC |
| SRR5052733 | shoot_apical_meristem | 8_days_after_shift | 0.94 | MC |
| SRR5052734 | shoot_apical_meristem | 12_days_after_shift | 1.08 | MC |
| SRR1617549 | shoot_apical_meristem | no collect | 2.43 | MC |
| SRR1617550 | shoot_apical_meristem | no collect | 4.76 | MC |
| SRR1617554 | shoot_apical_meristem | no collect | 5.77 | MC |
| SRR1617556 | shoot_apical_meristem | no collect | 6.96 | MC |
| SRR1617558 | shoot_apical_meristem | no collect | 5.80 | MC |
| SRR1617559 | shoot_apical_meristem | no collect | 3.48 | MC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 1.65 | MC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 0.99 | MC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 1.23 | MC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 2.70 | MC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 2.05 | MC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 1.62 | MC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 1.14 | MC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 1.77 | MC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 1.71 | MC |