| SRR4457252 | 2nd_leaf | DAH12 | 0.73 | MC |
| SRR4457253 | 2nd_leaf | DAH12 | 0.45 | MC |
| SRR4457254 | 2nd_leaf | DAH12 | 0.76 | MC |
| SRR4457255 | 2nd_leaf | DAH20 | 1.50 | MC |
| SRR4457256 | 2nd_leaf | DAH20 | 1.06 | MC |
| SRR4457257 | 2nd_leaf | DAH20 | 1.87 | MC |
| SRR4457258 | 2nd_leaf | DAH28 | 0.47 | MC |
| SRR4457259 | 2nd_leaf | DAH28 | 0.41 | MC |
| SRR4457260 | 2nd_leaf | DAH28 | 1.30 | MC |
| SRR4457261 | 2nd_leaf | DAH36 | 0.57 | MC |
| SRR4457263 | 2nd_leaf | DAH36 | 0.78 | MC |
| SRR4457265 | 2nd_leaf | DAH44 | 1.05 | MC |
| SRR6320473 | carpel | wt | 2.11 | MC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 0.46 | MC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 0.43 | MC |
| SRR976168 | flag_leaf | wild_type | 1.49 | MC |
| SRR4457234 | flag_leaf | DAH12 | 0.40 | MC |
| SRR4457235 | flag_leaf | DAH12 | 0.73 | MC |
| SRR4457236 | flag_leaf | DAH12 | 0.68 | MC |
| SRR4457237 | flag_leaf | DAH20 | 0.69 | MC |
| SRR4457238 | flag_leaf | DAH20 | 0.97 | MC |
| SRR4457239 | flag_leaf | DAH20 | 0.62 | MC |
| SRR4457240 | flag_leaf | DAH28 | 0.52 | MC |
| SRR4457241 | flag_leaf | DAH28 | 0.67 | MC |
| SRR4457242 | flag_leaf | DAH28 | 0.90 | MC |
| SRR8060835 | leaf | wild_type | 1.37 | MC |
| SRR8060836 | leaf | wild_type | 1.24 | MC |
| SRR8060837 | leaf | wild_type | 0.92 | MC |
| SRR8240824 | leaf | wild_type | 0.88 | MC |
| SRR8240825 | leaf | wild_type | 0.82 | MC |
| SRR8240826 | leaf | wild_type | 1.87 | MC |
| SRR8240818 | leaf | wild_type | 1.08 | MC |
| SRR8240819 | leaf | wild_type | 0.72 | MC |
| SRR8240820 | leaf | wild_type | 0.53 | MC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 0.32 | MC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 0.40 | MC |
| SRR1952783 | leaf | 48_hrs_after_inoculation_with_BLS279 | 0.39 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 0.22 | MC |
| SRR1952808 | leaf | 48_hrs_after_mock_inoculation | 0.51 | MC |
| SRR1761789 | leaf | "wild_type,drought,2" | 0.57 | MC |
| SRR1761790 | leaf | "wild_type,control,2" | 2.55 | MC |
| SRR1761791 | leaf | "wild_type,control,2" | 2.49 | MC |
| SRR1761781 | leaf | "wild_type,drought,1" | 0.57 | MC |
| SRR1761782 | leaf | "wild_type,control,1" | 2.55 | MC |
| SRR1761783 | leaf | "wild_type,control,1" | 2.49 | MC |
| SRR1761529 | leaf | drought | 0.57 | MC |
| SRR1761530 | leaf | control | 2.55 | MC |
| SRR1761531 | leaf | control | 2.49 | MC |
| SRR504365 | leaf | wt | 0.80 | MC |
| SRR6417964 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 0.48 | MC |
| SRR6417966 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 0.62 | MC |
| SRR3209769 | leaf | Watered;Long_Day | 1.12 | MC |
| SRR3209770 | leaf | Watered;Long_Day | 1.18 | MC |
| SRR3209773 | leaf | Watered;Short_Day | 2.36 | MC |
| SRR3209774 | leaf | Watered;Short_Day | 2.33 | MC |
| SRR3209775 | leaf | Drought;Short_Day | 0.51 | MC |
| SRR3209776 | leaf | Drought;Short_Day | 0.32 | MC |
| SRR3209777 | leaf | Watered;Long_Day | 0.38 | MC |
| SRR3209779 | leaf | Watered;Short_Day | 2.57 | MC |
| SRR3209780 | leaf | Drought;Short_Day | 0.61 | MC |
| SRR8611900 | leaf | Non-inoculated | 2.14 | MC |
| SRR8611901 | leaf | Non-inoculated | 2.21 | MC |
| SRR8611902 | leaf | Non-inoculated | 1.85 | MC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 2.65 | MC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 3.07 | MC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 2.22 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 0.31 | MC |
| SRR1213693 | leaf | wt | 1.07 | MC |
| SRR6502086 | leaf | 100 mM NaCl | 0.38 | MC |
| SRR5856928 | leaf | control | 0.19 | MC |
| SRR5856931 | leaf | salt | 0.29 | MC |
| SRR5856932 | leaf | salt | 0.24 | MC |
| SRR5856937 | leaf | salt | 0.15 | MC |
| SRR5856938 | leaf | salt | 0.17 | MC |
| SRR6053392 | leaf | ethanol solvent (untreated control) | 2.86 | MC |
| SRR6053393 | leaf | ethanol solvent (untreated control) | 1.81 | MC |
| SRR6053394 | leaf | ethanol solvent (untreated control) | 1.86 | MC |
| SRR6053396 | leaf | gibberellic acid (GA) | 5.59 | MC |
| SRR6053397 | leaf | gibberellic acid (GA) | 3.25 | MC |
| SRR6053398 | leaf | Paclobutrazol (PB) | 1.16 | MC |
| SRR6053399 | leaf | Paclobutrazol (PB) | 1.84 | MC |
| SRR6053400 | leaf | Paclobutrazol (PB) | 2.46 | MC |
| SRR6168974 | leaf | none (control) | 0.43 | MC |
| SRR8582889 | panicle | AM | 0.20 | MC |
| SRR8582890 | panicle | AM | 0.45 | MC |
| SRR5110437 | panicle | Dawn + 7h | 1.73 | MC |
| SRR5110440 | panicle | Dawn + 7h | 0.74 | MC |
| SRR5110441 | panicle | Dawn + 10.5h | 1.11 | MC |
| SRR5110442 | panicle | Dawn + 10.5h | 1.31 | MC |
| SRR5110443 | panicle | Dawn + 10.5h | 1.59 | MC |
| SRR5110444 | panicle | Dawn + 10.5h | 1.79 | MC |
| SRR5110445 | panicle | Dusk | 3.21 | MC |
| SRR5110446 | panicle | Dusk | 1.57 | MC |
| SRR5110447 | panicle | Dusk | 1.86 | MC |
| SRR5110448 | panicle | Dusk | 1.00 | MC |
| SRR5110449 | panicle | Dawn + 14h | 0.99 | MC |
| SRR5110450 | panicle | Dawn + 14h | 1.03 | MC |
| SRR5110451 | panicle | Dawn + 14h | 0.94 | MC |
| SRR5110453 | panicle | Dawn + 17.5h | 0.29 | MC |
| SRR5278374 | pistil | "Balilla,S1" | 1.12 | MC |
| SRR5278375 | pistil | "Balilla,S1" | 0.28 | MC |
| SRR5278376 | pistil | "Balilla,S2" | 1.16 | MC |
| SRR5278377 | pistil | "Balilla,S2" | 0.81 | MC |
| SRR5278379 | pistil | "Balilla,S3" | 0.65 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 0.32 | MC |
| SRR1213695 | root | wt | 1.01 | MC |
| SRR4947503 | root | control | 0.58 | MC |
| SRR6441555 | seedling | wild_type | 0.58 | MC |
| SRR2154086 | seedling | wt | 0.42 | MC |
| SRR2154082 | seedling | wt | 0.67 | MC |
| SRR2154083 | seedling | wt | 0.47 | MC |
| SRR2154084 | seedling | wt | 0.36 | MC |
| SRR2154087 | seedling | wt | 0.62 | MC |
| SRR3098741 | seedling | wt | 0.62 | MC |
| SRR3098743 | seedling | wt | 0.31 | MC |
| SRR1944583 | seedling | no_treatment | 0.82 | MC |
| SRR358791 | seedling | wt | 0.68 | MC |
| SRR358792 | seedling | wt | 1.29 | MC |
| SRR358793 | seedling | wt | 1.84 | MC |
| SRR358794 | seedling | wt | 1.61 | MC |
| SRR1288363 | shoot | "none,3_days_post_infection" | 1.29 | MC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 3.24 | MC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 4.07 | MC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 6.51 | MC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 8.83 | MC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 4.77 | MC |
| SRR4841743 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 4.12 | MC |
| SRR3950244 | shoot | Drought_during_3_days;Fr13_inoculated | 0.71 | MC |
| SRR3950245 | shoot | Drought_during_3_days;Fr13_inoculated | 0.36 | MC |
| SRR3950247 | shoot | No_DIS;Fr13_inoculated | 1.60 | MC |
| SRR3950248 | shoot | No_DIS;Fr13_inoculated | 2.18 | MC |
| SRR3950250 | shoot | Drought_during_3_days;_mock_inoculated | 1.84 | MC |
| SRR3950251 | shoot | Drought_during_3_days;_mock_inoculated | 2.96 | MC |
| SRR3950252 | shoot | Drought_during_3_days;_mock_inoculated | 3.23 | MC |
| SRR3950253 | shoot | No_DIS;_mock_inoculated | 1.89 | MC |
| SRR3950254 | shoot | No_DIS;_mock_inoculated | 2.87 | MC |
| SRR3950255 | shoot | No_DIS;_mock_inoculated | 1.45 | MC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 0.48 | MC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 0.60 | MC |
| SRR5796943 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 0.86 | MC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 0.63 | MC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 0.55 | MC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 0.48 | MC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 0.44 | MC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 0.75 | MC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 0.31 | MC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 0.40 | MC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 0.84 | MC |
| SRR1617553 | shoot_apical_meristem | no collect | 1.05 | MC |
| SRR1617557 | shoot_apical_meristem | no collect | 0.98 | MC |
| SRR1617558 | shoot_apical_meristem | no collect | 1.04 | MC |
| SRR7760292 | spikelet | control condition (29C) for 7 hrs | 0.57 | MC |
| SRR7760298 | spikelet | control condition (29C) for 7 hrs | 0.59 | MC |
| SRR7760300 | spikelet | high temperature treatment (38C) for 7 hrs | 0.34 | MC |
| SRR7760301 | spikelet | high temperature treatment (38C) for 7 hrs | 0.33 | MC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 0.21 | MC |