| SRR4457250 | 2nd_leaf | DAH4 | 0.59 | MC |
| SRR4457251 | 2nd_leaf | DAH4 | 0.34 | MC |
| SRR4457253 | 2nd_leaf | DAH12 | 1.36 | MC |
| SRR4457254 | 2nd_leaf | DAH12 | 0.69 | MC |
| SRR4457262 | 2nd_leaf | DAH36 | 1.55 | MC |
| SRR6320498 | carpel | wt | 6.25 | MC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 3.75 | MC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 4.89 | MC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 0.89 | MC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 2.45 | MC |
| SRR7265403 | coleoptile | 2dN | 4.32 | MC |
| SRR7265406 | coleoptile | 3dA | 3.39 | MC |
| SRR7265407 | coleoptile | 3dA | 1.47 | MC |
| SRR7265409 | coleoptile | 3dN | 1.65 | MC |
| SRR7265410 | coleoptile | 3dN | 1.44 | MC |
| SRR7265411 | coleoptile | 3dN | 2.76 | MC |
| SRR7265415 | coleoptile | 4dN | 1.88 | MC |
| SRR7265416 | coleoptile | 4dN | 2.57 | MC |
| SRR7265417 | coleoptile | 4dN | 3.35 | MC |
| SRR7265419 | coleoptile | 3dN1dA | 3.54 | MC |
| SRR7265420 | coleoptile | 3dN1dA | 3.65 | MC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 1.74 | MC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 0.70 | MC |
| SRR4104647 | crown | "Zn_Efficient,8_days_of_treatment" | 1.04 | MC |
| SRR4104640 | crown | "Zn_deficiency,8_days_of_treatment" | 1.76 | MC |
| SRR4104641 | crown | "Zn_deficiency,8_days_of_treatment" | 1.18 | MC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 2.21 | MC |
| SRR4104643 | crown | "Zn_Efficient,8_days_of_treatment" | 0.85 | MC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 1.55 | MC |
| SRR4104646 | crown | "Zn_Efficient,8_days_of_treatment" | 0.96 | MC |
| SRR7265374 | embryo | dry seed 0 h | 0.54 | MC |
| SRR7265376 | embryo | 1hA | 1.46 | MC |
| SRR7265377 | embryo | 1hA | 1.04 | MC |
| SRR7265378 | embryo | 1hA | 0.89 | MC |
| SRR7265379 | embryo | 1hN | 0.58 | MC |
| SRR7265381 | embryo | 1hN | 0.30 | MC |
| SRR7265382 | embryo | 3hA | 0.75 | MC |
| SRR7265386 | embryo | 3hN | 0.35 | MC |
| SRR7265389 | embryo | 12hA | 4.81 | MC |
| SRR7265390 | embryo | 12hA | 4.05 | MC |
| SRR7265391 | embryo | 12hN | 2.90 | MC |
| SRR7265392 | embryo | 12hN | 3.63 | MC |
| SRR7265393 | embryo | 12hN | 2.55 | MC |
| SRR7265394 | embryo | 24hA | 3.78 | MC |
| SRR7265395 | embryo | 24hA | 5.03 | MC |
| SRR7265397 | embryo | 24hN | 5.24 | MC |
| SRR7265398 | embryo | 24hN | 3.53 | MC |
| SRR2338867 | endosprem | control | 2.17 | MC |
| SRR2338868 | endosprem | high_temperature | 2.52 | MC |
| SRR2338869 | endosprem | high_temperature | 2.78 | MC |
| SRR4457232 | flag_leaf | DAH4 | 0.46 | MC |
| SRR4457234 | flag_leaf | DAH12 | 0.43 | MC |
| SRR4457242 | flag_leaf | DAH28 | 0.35 | MC |
| SRR4457243 | flag_leaf | DAH36 | 0.69 | MC |
| SRR4457245 | flag_leaf | DAH36 | 1.01 | MC |
| SRR4457246 | flag_leaf | DAH44 | 0.45 | MC |
| SRR4457248 | flag_leaf | DAH44 | 1.20 | MC |
| SRR8060835 | leaf | wild_type | 2.12 | MC |
| SRR8240824 | leaf | wild_type | 1.21 | MC |
| SRR8240825 | leaf | wild_type | 1.51 | MC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 4.23 | MC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 3.99 | MC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 2.81 | MC |
| SRR2922622 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 3.25 | MC |
| SRR1952778 | leaf | 48_hrs_after_inoculation_with_BLS256 | 1.40 | MC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 2.51 | MC |
| SRR1952783 | leaf | 48_hrs_after_inoculation_with_BLS279 | 2.02 | MC |
| SRR1952785 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 2.20 | MC |
| SRR1952786 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 1.24 | MC |
| SRR1952787 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.74 | MC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 1.02 | MC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.67 | MC |
| SRR1952790 | leaf | 48_hrs_after_inoculation_with_L8 | 2.12 | MC |
| SRR1952791 | leaf | 48_hrs_after_inoculation_with_L8 | 0.91 | MC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 3.19 | MC |
| SRR1952795 | leaf | 48_hrs_after_inoculation_with_RS105 | 2.21 | MC |
| SRR1952797 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 1.72 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 1.61 | MC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 4.15 | MC |
| SRR1952803 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 2.80 | MC |
| SRR1952804 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 1.33 | MC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 2.72 | MC |
| SRR6417967 | leaf | H2O_control | 0.96 | MC |
| SRR6417968 | leaf | H2O_control | 0.77 | MC |
| SRR6417969 | leaf | H2O_control | 0.96 | MC |
| SRR3209775 | leaf | Drought;Short_Day | 1.36 | MC |
| SRR3209776 | leaf | Drought;Short_Day | 1.88 | MC |
| SRR3209780 | leaf | Drought;Short_Day | 1.42 | MC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 0.28 | MC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 0.38 | MC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 0.30 | MC |
| SRR6502085 | leaf | 100 mM NaCl | 1.17 | MC |
| SRR6502087 | leaf | 100 mM NaCl | 2.21 | MC |
| SRR6502089 | leaf | control | 2.09 | MC |
| SRR6502090 | leaf | control | 1.89 | MC |
| SRR6502098 | leaf | 100 mM NaCl | 1.88 | MC |
| SRR6502101 | leaf | control | 2.45 | MC |
| SRR6502102 | leaf | control | 3.64 | MC |
| SRR5856928 | leaf | control | 0.52 | MC |
| SRR5856929 | leaf | control | 0.63 | MC |
| SRR5856931 | leaf | salt | 0.32 | MC |
| SRR5856933 | leaf | control | 0.53 | MC |
| SRR5856934 | leaf | control | 0.22 | MC |
| SRR5856935 | leaf | control | 0.46 | MC |
| SRR6168976 | leaf | 0.5% Na2CO3 solution for 36h | 0.67 | MC |
| SRR8582890 | panicle | AM | 0.26 | MC |
| SRR8582891 | panicle | PM | 2.23 | MC |
| SRR8582892 | panicle | PM | 4.63 | MC |
| SRR8582893 | panicle | PM | 1.21 | MC |
| SRR5110429 | panicle | Dawn | 2.34 | MC |
| SRR5110432 | panicle | Dawn | 2.08 | MC |
| SRR4947496 | root | control | 4.22 | MC |
| SRR5110433 | panicle | Dawn + 3.5h | 1.13 | MC |
| SRR5110434 | panicle | Dawn + 3.5h | 4.07 | MC |
| SRR5110435 | panicle | Dawn + 3.5h | 1.69 | MC |
| SRR5110436 | panicle | Dawn + 3.5h | 2.80 | MC |
| SRR5110437 | panicle | Dawn + 7h | 1.88 | MC |
| SRR5110438 | panicle | Dawn + 7h | 1.48 | MC |
| SRR5110443 | panicle | Dawn + 10.5h | 3.49 | MC |
| SRR5110444 | panicle | Dawn + 10.5h | 4.13 | MC |
| SRR5110445 | panicle | Dusk | 3.65 | MC |
| SRR5110446 | panicle | Dusk | 1.67 | MC |
| SRR5110447 | panicle | Dusk | 1.82 | MC |
| SRR5110448 | panicle | Dusk | 3.25 | MC |
| SRR5110449 | panicle | Dawn + 14h | 4.23 | MC |
| SRR5110450 | panicle | Dawn + 14h | 4.50 | MC |
| SRR5110452 | panicle | Dawn + 14h | 3.19 | MC |
| SRR5110453 | panicle | Dawn + 17.5h | 1.70 | MC |
| SRR5110455 | panicle | Dawn + 17.5h | 1.95 | MC |
| SRR5110456 | panicle | Dawn + 17.5h | 1.96 | MC |
| SRR5110457 | panicle | Dawn + 21h | 3.07 | MC |
| SRR5110458 | panicle | Dawn + 21h | 1.93 | MC |
| SRR5110460 | panicle | Dawn + 21h | 3.62 | MC |
| SRR1633182 | panicle | WT | 3.14 | MC |
| SRR5278374 | pistil | "Balilla,S1" | 0.82 | MC |
| SRR5278375 | pistil | "Balilla,S1" | 1.72 | MC |
| SRR5278376 | pistil | "Balilla,S2" | 3.97 | MC |
| SRR5278377 | pistil | "Balilla,S2" | 4.24 | MC |
| SRR5126149 | root | "mock,1_day" | 4.63 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 2.48 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 2.86 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 1.92 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 4.35 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 2.22 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 2.12 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 3.75 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 2.30 | MC |
| SRR3472897 | root | nontransgenic_rice_plant | 0.84 | MC |
| SRR3472900 | root | nontransgenic_rice_plant | 1.17 | MC |
| SRR1213694 | root | wt | 2.89 | MC |
| SRR4947479 | root | control | 0.98 | MC |
| SRR4947480 | root | control | 3.31 | MC |
| SRR4947481 | root | control | 5.63 | MC |
| SRR4947482 | root | Al | 2.72 | MC |
| SRR4947483 | root | Al | 1.63 | MC |
| SRR4947487 | root | control | 2.31 | MC |
| SRR4947490 | root | Al | 1.31 | MC |
| SRR4947491 | root | Al | 3.51 | MC |
| SRR4947494 | root | control | 2.41 | MC |
| SRR4947498 | root | Al | 1.88 | MC |
| SRR4947499 | root | Al | 1.87 | MC |
| SRR4947502 | root | control | 1.68 | MC |
| SRR4947503 | root | control | 1.88 | MC |
| SRR4947506 | root | Al | 2.85 | MC |
| SRR4947507 | root | Al | 1.38 | MC |
| SRR6502091 | root | 100 mM NaCl | 3.66 | MC |
| SRR6502093 | root | 100 mM NaCl | 3.98 | MC |
| SRR6502094 | root | control | 3.67 | MC |
| SRR6502095 | root | control | 3.27 | MC |
| SRR6502096 | root | control | 4.36 | MC |
| SRR6502104 | root | 100 mM NaCl | 4.17 | MC |
| SRR6502105 | root | 100 mM NaCl | 3.85 | MC |
| SRR6502106 | root | control | 3.72 | MC |
| SRR6502107 | root | control | 3.09 | MC |
| SRR6502108 | root | control | 3.60 | MC |
| SRR6441554 | seedling | wild_type | 2.38 | MC |
| SRR6441555 | seedling | wild_type | 1.18 | MC |
| SRR2154086 | seedling | wt | 3.51 | MC |
| SRR2154082 | seedling | wt | 0.98 | MC |
| SRR2154083 | seedling | wt | 1.21 | MC |
| SRR2154084 | seedling | wt | 0.92 | MC |
| SRR2154085 | seedling | wt | 3.34 | MC |
| SRR2154087 | seedling | wt | 3.75 | MC |
| SRR3098741 | seedling | wt | 0.34 | MC |
| SRR3098742 | seedling | wt | 0.48 | MC |
| SRR3098743 | seedling | wt | 0.60 | MC |
| SRR2857719 | seedling | drought_stress_0h | 1.08 | MC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 2.63 | MC |
| SRR4841741 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 2.28 | MC |
| SRR3950245 | shoot | Drought_during_3_days;Fr13_inoculated | 1.11 | MC |
| SRR3950249 | shoot | No_DIS;Fr13_inoculated | 0.87 | MC |
| SRR3950253 | shoot | No_DIS;_mock_inoculated | 0.82 | MC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 2.91 | MC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 3.35 | MC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 2.92 | MC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 3.71 | MC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 1.26 | MC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 2.19 | MC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 2.61 | MC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 1.36 | MC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 2.78 | MC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 2.27 | MC |
| SRR5796958 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 0.42 | MC |
| SRR5796959 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 0.92 | MC |
| SRR5052709 | shoot_apical_meristem | 0_days_after_shift | 2.12 | MC |
| SRR5052710 | shoot_apical_meristem | 0_days_after_shift | 1.96 | MC |
| SRR5052713 | shoot_apical_meristem | 4_days_after_shift | 4.31 | MC |
| SRR5052716 | shoot_apical_meristem | 8_days_after_shift | 4.70 | MC |
| SRR5052719 | shoot_apical_meristem | 8_days_after_shift | 4.04 | MC |
| SRR5052720 | shoot_apical_meristem | 8_days_after_shift | 3.52 | MC |
| SRR5052721 | shoot_apical_meristem | 12_days_after_shift | 1.86 | MC |
| SRR5052723 | shoot_apical_meristem | 12_days_after_shift | 2.37 | MC |
| SRR5052726 | shoot_apical_meristem | 0_days_after_shift | 3.64 | MC |
| SRR5052727 | shoot_apical_meristem | 4_days_after_shift | 2.50 | MC |
| SRR5052728 | shoot_apical_meristem | 4_days_after_shift | 2.11 | MC |
| SRR5052731 | shoot_apical_meristem | 8_days_after_shift | 0.85 | MC |
| SRR5052732 | shoot_apical_meristem | 8_days_after_shift | 1.57 | MC |
| SRR5052733 | shoot_apical_meristem | 8_days_after_shift | 3.47 | MC |
| SRR5052734 | shoot_apical_meristem | 12_days_after_shift | 3.02 | MC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 2.32 | MC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 1.40 | MC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 3.27 | MC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 2.44 | MC |
| SRR7760291 | spikelet | control condition (29C) for 7 hrs | 4.33 | MC |
| SRR7760297 | spikelet | control condition (29C) for 7 hrs | 4.36 | MC |