| SRR4457253 | 2nd_leaf | DAH12 | 0.36 | MC |
| SRR4457258 | 2nd_leaf | DAH28 | 0.26 | MC |
| SRR6320473 | carpel | wt | 3.09 | MC |
| SRR6320498 | carpel | wt | 1.71 | MC |
| SRR4947495 | root | control | 2.79 | MC |
| SRR7265406 | coleoptile | 3dA | 1.74 | MC |
| SRR7265407 | coleoptile | 3dA | 1.62 | MC |
| SRR7265408 | coleoptile | 3dA | 1.13 | MC |
| SRR7265409 | coleoptile | 3dN | 3.87 | MC |
| SRR7265410 | coleoptile | 3dN | 1.66 | MC |
| SRR7265411 | coleoptile | 3dN | 2.97 | MC |
| SRR7265412 | coleoptile | 4dA | 2.54 | MC |
| SRR7265413 | coleoptile | 4dA | 2.72 | MC |
| SRR7265414 | coleoptile | 4dA | 3.01 | MC |
| SRR7265415 | coleoptile | 4dN | 3.50 | MC |
| SRR7265416 | coleoptile | 4dN | 2.67 | MC |
| SRR7265417 | coleoptile | 4dN | 2.96 | MC |
| SRR7265418 | coleoptile | 3dN1dA | 3.50 | MC |
| SRR7265419 | coleoptile | 3dN1dA | 3.60 | MC |
| SRR7265420 | coleoptile | 3dN1dA | 2.70 | MC |
| SRR4104637 | crown | "Zn_deficiency,8_days_of_treatment" | 0.84 | MC |
| SRR4104638 | crown | "Zn_deficiency,8_days_of_treatment" | 0.87 | MC |
| SRR4104647 | crown | "Zn_Efficient,8_days_of_treatment" | 1.02 | MC |
| SRR4104640 | crown | "Zn_deficiency,8_days_of_treatment" | 1.42 | MC |
| SRR4104641 | crown | "Zn_deficiency,8_days_of_treatment" | 0.48 | MC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 1.89 | MC |
| SRR4104643 | crown | "Zn_Efficient,8_days_of_treatment" | 1.38 | MC |
| SRR4104644 | crown | "Zn_Efficient,8_days_of_treatment" | 0.63 | MC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 1.02 | MC |
| SRR4104646 | crown | "Zn_Efficient,8_days_of_treatment" | 1.31 | MC |
| SRR7265373 | embryo | dry seed 0 h | 3.06 | MC |
| SRR7265374 | embryo | dry seed 0 h | 3.81 | MC |
| SRR7265375 | embryo | dry seed 0 h | 0.84 | MC |
| SRR7265380 | embryo | 1hN | 3.12 | MC |
| SRR7265385 | embryo | 3hN | 4.19 | MC |
| SRR7265388 | embryo | 12hA | 4.22 | MC |
| SRR7265389 | embryo | 12hA | 2.85 | MC |
| SRR7265390 | embryo | 12hA | 3.92 | MC |
| SRR7265391 | embryo | 12hN | 4.82 | MC |
| SRR2338869 | endosprem | high_temperature | 0.94 | MC |
| SRR976168 | flag_leaf | wild_type | 2.24 | MC |
| SRR4457232 | flag_leaf | DAH4 | 0.27 | MC |
| SRR4457235 | flag_leaf | DAH12 | 0.59 | MC |
| SRR4457237 | flag_leaf | DAH20 | 0.46 | MC |
| SRR4457238 | flag_leaf | DAH20 | 0.42 | MC |
| SRR1213690 | flower | wt(flower buds) | 0.43 | MC |
| SRR8060835 | leaf | wild_type | 0.71 | MC |
| SRR8060836 | leaf | wild_type | 0.68 | MC |
| SRR8060837 | leaf | wild_type | 0.94 | MC |
| SRR2922622 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 1.28 | MC |
| SRR2922623 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 2.77 | MC |
| SRR2922624 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 1.99 | MC |
| SRR1952778 | leaf | 48_hrs_after_inoculation_with_BLS256 | 3.34 | MC |
| SRR1952780 | leaf | 48_hrs_after_inoculation_with_BLS256 | 0.77 | MC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 1.07 | MC |
| SRR1952782 | leaf | 48_hrs_after_inoculation_with_BLS279 | 0.70 | MC |
| SRR1952783 | leaf | 48_hrs_after_inoculation_with_BLS279 | 1.62 | MC |
| SRR1952784 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 0.61 | MC |
| SRR1952785 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 2.05 | MC |
| SRR1952786 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 1.95 | MC |
| SRR1952787 | leaf | 48_hrs_after_inoculation_with_B8_12 | 1.55 | MC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 1.69 | MC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 1.89 | MC |
| SRR1952790 | leaf | 48_hrs_after_inoculation_with_L8 | 0.84 | MC |
| SRR1952791 | leaf | 48_hrs_after_inoculation_with_L8 | 1.17 | MC |
| SRR1952792 | leaf | 48_hrs_after_inoculation_with_L8 | 0.83 | MC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 1.33 | MC |
| SRR1952794 | leaf | 48_hrs_after_inoculation_with_RS105 | 1.20 | MC |
| SRR1952795 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.51 | MC |
| SRR1952796 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 1.11 | MC |
| SRR1952797 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 1.13 | MC |
| SRR1952799 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 2.82 | MC |
| SRR1952800 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 2.28 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 1.86 | MC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 2.46 | MC |
| SRR1952803 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 1.91 | MC |
| SRR1952804 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 1.11 | MC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 1.52 | MC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 2.39 | MC |
| SRR1952807 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 2.16 | MC |
| SRR1952810 | leaf | 48_hrs_after_mock_inoculation | 0.57 | MC |
| SRR1761788 | leaf | "wild_type,drought,2" | 1.72 | MC |
| SRR1761789 | leaf | "wild_type,drought,2" | 0.62 | MC |
| SRR1761790 | leaf | "wild_type,control,2" | 1.27 | MC |
| SRR1761791 | leaf | "wild_type,control,2" | 1.61 | MC |
| SRR1761780 | leaf | "wild_type,drought,1" | 1.72 | MC |
| SRR1761781 | leaf | "wild_type,drought,1" | 0.62 | MC |
| SRR1761782 | leaf | "wild_type,control,1" | 1.27 | MC |
| SRR1761783 | leaf | "wild_type,control,1" | 1.61 | MC |
| SRR1761528 | leaf | drought | 1.72 | MC |
| SRR1761529 | leaf | drought | 0.62 | MC |
| SRR1761530 | leaf | control | 1.27 | MC |
| SRR1761531 | leaf | control | 1.61 | MC |
| SRR504365 | leaf | wt | 0.54 | MC |
| SRR3209769 | leaf | Watered;Long_Day | 2.28 | MC |
| SRR3209770 | leaf | Watered;Long_Day | 1.31 | MC |
| SRR3209771 | leaf | Drought;Long_Day | 1.43 | MC |
| SRR3209772 | leaf | Drought;Long_Day | 0.94 | MC |
| SRR3209773 | leaf | Watered;Short_Day | 1.10 | MC |
| SRR3209774 | leaf | Watered;Short_Day | 1.28 | MC |
| SRR3209775 | leaf | Drought;Short_Day | 1.89 | MC |
| SRR3209776 | leaf | Drought;Short_Day | 2.43 | MC |
| SRR3209778 | leaf | Drought;Long_Day | 1.10 | MC |
| SRR3209779 | leaf | Watered;Short_Day | 0.87 | MC |
| SRR3209780 | leaf | Drought;Short_Day | 1.83 | MC |
| SRR8611900 | leaf | Non-inoculated | 0.25 | MC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 0.28 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 0.22 | MC |
| SRR1213692 | leaf | wt | 2.10 | MC |
| SRR6502085 | leaf | 100 mM NaCl | 1.32 | MC |
| SRR6502086 | leaf | 100 mM NaCl | 1.83 | MC |
| SRR6502087 | leaf | 100 mM NaCl | 1.43 | MC |
| SRR6502088 | leaf | control | 1.24 | MC |
| SRR6502089 | leaf | control | 2.01 | MC |
| SRR6502090 | leaf | control | 1.12 | MC |
| SRR6502097 | leaf | 100 mM NaCl | 2.06 | MC |
| SRR6502098 | leaf | 100 mM NaCl | 3.40 | MC |
| SRR6502099 | leaf | 100 mM NaCl | 0.73 | MC |
| SRR6502100 | leaf | control | 4.32 | MC |
| SRR6502101 | leaf | control | 2.26 | MC |
| SRR6502102 | leaf | control | 3.52 | MC |
| SRR5856927 | leaf | control | 0.49 | MC |
| SRR5856932 | leaf | salt | 0.34 | MC |
| SRR5856934 | leaf | control | 0.60 | MC |
| SRR6053395 | leaf | gibberellic acid (GA) | 8.32 | MC |
| SRR6053396 | leaf | gibberellic acid (GA) | 2.30 | MC |
| SRR6053398 | leaf | Paclobutrazol (PB) | 1.83 | MC |
| SRR6168976 | leaf | 0.5% Na2CO3 solution for 36h | 0.79 | MC |
| SRR6168977 | leaf | 0.5% Na2CO3 solution for 36h | 0.58 | MC |
| SRR6168983 | leaf | 0.5% Na2CO3 solution for 36h | 0.23 | MC |
| SRR5110432 | panicle | Dawn | 1.84 | MC |
| SRR4947496 | root | control | 2.28 | MC |
| SRR5110433 | panicle | Dawn + 3.5h | 4.72 | MC |
| SRR5110434 | panicle | Dawn + 3.5h | 3.02 | MC |
| SRR5110436 | panicle | Dawn + 3.5h | 2.78 | MC |
| SRR5110438 | panicle | Dawn + 7h | 4.13 | MC |
| SRR5110439 | panicle | Dawn + 7h | 2.91 | MC |
| SRR5110440 | panicle | Dawn + 7h | 5.10 | MC |
| SRR5110441 | panicle | Dawn + 10.5h | 1.77 | MC |
| SRR5110442 | panicle | Dawn + 10.5h | 3.88 | MC |
| SRR5110445 | panicle | Dusk | 2.84 | MC |
| SRR5110447 | panicle | Dusk | 3.19 | MC |
| SRR5110448 | panicle | Dusk | 4.15 | MC |
| SRR5110449 | panicle | Dawn + 14h | 3.70 | MC |
| SRR5110450 | panicle | Dawn + 14h | 1.79 | MC |
| SRR5110453 | panicle | Dawn + 17.5h | 2.83 | MC |
| SRR5110454 | panicle | Dawn + 17.5h | 1.82 | MC |
| SRR5110455 | panicle | Dawn + 17.5h | 3.41 | MC |
| SRR5110456 | panicle | Dawn + 17.5h | 4.57 | MC |
| SRR5110457 | panicle | Dawn + 21h | 3.22 | MC |
| SRR5110458 | panicle | Dawn + 21h | 2.42 | MC |
| SRR5110459 | panicle | Dawn + 21h | 2.24 | MC |
| SRR5110460 | panicle | Dawn + 21h | 1.43 | MC |
| SRR1213696 | endosprem | wt(milk grains) | 0.22 | MC |
| SRR1213697 | endosprem | wt(mature seeds) | 0.35 | MC |
| SRR1633182 | panicle | WT | 0.45 | MC |
| SRR5126153 | root | "mock,7_days" | 0.33 | MC |
| SRR5126157 | root | "mock,7_days" | 0.55 | MC |
| SRR5126165 | root | "mock,14_days" | 0.59 | MC |
| SRR5126167 | root | "mock,14_days" | 0.31 | MC |
| SRR5126169 | root | "mock,14_days" | 0.45 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 0.33 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 0.40 | MC |
| SRR4947478 | root | control | 3.74 | MC |
| SRR4947479 | root | control | 1.83 | MC |
| SRR4947480 | root | control | 3.32 | MC |
| SRR4947481 | root | control | 3.88 | MC |
| SRR4947482 | root | Al | 1.33 | MC |
| SRR4947483 | root | Al | 1.39 | MC |
| SRR4947485 | root | Al | 2.24 | MC |
| SRR4947487 | root | control | 1.81 | MC |
| SRR4947488 | root | control | 3.01 | MC |
| SRR4947489 | root | control | 1.90 | MC |
| SRR4947490 | root | Al | 2.80 | MC |
| SRR4947491 | root | Al | 3.29 | MC |
| SRR4947492 | root | Al | 5.49 | MC |
| SRR4947493 | root | Al | 2.60 | MC |
| SRR4947494 | root | control | 3.08 | MC |
| SRR4947497 | root | control | 2.71 | MC |
| SRR4947498 | root | Al | 3.55 | MC |
| SRR4947499 | root | Al | 2.32 | MC |
| SRR4947500 | root | Al | 3.51 | MC |
| SRR4947501 | root | Al | 5.35 | MC |
| SRR4947502 | root | control | 4.76 | MC |
| SRR4947503 | root | control | 1.88 | MC |
| SRR4947504 | root | control | 4.30 | MC |
| SRR4947506 | root | Al | 3.63 | MC |
| SRR4947507 | root | Al | 3.92 | MC |
| SRR4947508 | root | Al | 4.40 | MC |
| SRR6502091 | root | 100 mM NaCl | 1.09 | MC |
| SRR6502092 | root | 100 mM NaCl | 0.45 | MC |
| SRR6502093 | root | 100 mM NaCl | 1.18 | MC |
| SRR6502094 | root | control | 0.52 | MC |
| SRR6502095 | root | control | 0.66 | MC |
| SRR6502096 | root | control | 0.58 | MC |
| SRR6502103 | root | 100 mM NaCl | 2.55 | MC |
| SRR6502104 | root | 100 mM NaCl | 3.05 | MC |
| SRR6502105 | root | 100 mM NaCl | 0.95 | MC |
| SRR6502106 | root | control | 2.16 | MC |
| SRR6502107 | root | control | 1.42 | MC |
| SRR6502108 | root | control | 2.61 | MC |
| SRR1740436 | root_differentiation_zone | wt | 0.39 | MC |
| SRR1740431 | root_elongation_zone | wt | 0.60 | MC |
| SRR1740432 | root_elongation_zone | wt | 1.03 | MC |
| SRR1740433 | root_elongation_zone | wt | 1.21 | MC |
| SRR1740428 | root_meristematic_zone | wt | 0.51 | MC |
| SRR1740429 | root_meristematic_zone | wt | 0.45 | MC |
| SRR1740430 | root_meristematic_zone | wt | 0.51 | MC |
| SRR2154086 | seedling | wt | 0.59 | MC |
| SRR2154082 | seedling | wt | 0.69 | MC |
| SRR2154083 | seedling | wt | 0.63 | MC |
| SRR2154084 | seedling | wt | 0.40 | MC |
| SRR2154085 | seedling | wt | 0.93 | MC |
| SRR2857721 | seedling | drought_stress_6h | 0.29 | MC |
| SRR1944582 | seedling | "with_chilling_teatment_(4C,33h)" | 0.76 | MC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 4.42 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 10.13 | MC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 4.99 | MC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 8.05 | MC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 3.97 | MC |
| SRR4841741 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 2.81 | MC |
| SRR3950244 | shoot | Drought_during_3_days;Fr13_inoculated | 0.84 | MC |
| SRR3950245 | shoot | Drought_during_3_days;Fr13_inoculated | 0.25 | MC |
| SRR3950247 | shoot | No_DIS;Fr13_inoculated | 0.92 | MC |
| SRR3950248 | shoot | No_DIS;Fr13_inoculated | 1.09 | MC |
| SRR3950249 | shoot | No_DIS;Fr13_inoculated | 0.25 | MC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 0.69 | MC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 0.34 | MC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 2.10 | MC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 1.87 | MC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 2.92 | MC |
| SRR5052708 | shoot_apical_meristem | 0_days_after_shift | 0.71 | MC |
| SRR5052709 | shoot_apical_meristem | 0_days_after_shift | 0.62 | MC |
| SRR1617550 | shoot_apical_meristem | no collect | 1.56 | MC |
| SRR1617553 | shoot_apical_meristem | no collect | 1.44 | MC |
| SRR1617556 | shoot_apical_meristem | no collect | 1.33 | MC |
| SRR1617557 | shoot_apical_meristem | no collect | 0.81 | MC |
| SRR1617558 | shoot_apical_meristem | no collect | 0.93 | MC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 0.47 | MC |
| SRR7760292 | spikelet | control condition (29C) for 7 hrs | 0.66 | MC |
| SRR7760293 | spikelet | control condition (29C) for 7 hrs | 1.37 | MC |
| SRR7760294 | spikelet | high temperature treatment (38C) for 7 hrs | 1.03 | MC |
| SRR7760295 | spikelet | high temperature treatment (38C) for 7 hrs | 0.45 | MC |
| SRR7760298 | spikelet | control condition (29C) for 7 hrs | 0.43 | MC |
| SRR7760300 | spikelet | high temperature treatment (38C) for 7 hrs | 0.20 | MC |
| SRR7760301 | spikelet | high temperature treatment (38C) for 7 hrs | 0.61 | MC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 0.41 | MC |