| SRR6320473 | carpel | wt | 1.47 | MC |
| SRR5560727 | caryopsis | wild_type | 0.33 | MC |
| SRR5560728 | caryopsis | wild_type | 0.83 | MC |
| SRR5560729 | caryopsis | wild_type | 1.15 | MC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 0.45 | MC |
| SRR4947495 | root | control | 1.90 | MC |
| SRR7265400 | coleoptile | 2dA | 0.42 | MC |
| SRR7265402 | coleoptile | 2dA | 0.38 | MC |
| SRR7265406 | coleoptile | 3dA | 0.37 | MC |
| SRR7265407 | coleoptile | 3dA | 0.63 | MC |
| SRR7265417 | coleoptile | 4dN | 0.47 | MC |
| SRR7265419 | coleoptile | 3dN1dA | 0.48 | MC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 0.79 | MC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 0.46 | MC |
| SRR4104637 | crown | "Zn_deficiency,8_days_of_treatment" | 0.58 | MC |
| SRR4104647 | crown | "Zn_Efficient,8_days_of_treatment" | 1.67 | MC |
| SRR4104640 | crown | "Zn_deficiency,8_days_of_treatment" | 0.64 | MC |
| SRR4104643 | crown | "Zn_Efficient,8_days_of_treatment" | 1.19 | MC |
| SRR4104644 | crown | "Zn_Efficient,8_days_of_treatment" | 0.43 | MC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 0.80 | MC |
| SRR7265388 | embryo | 12hA | 1.01 | MC |
| SRR7265389 | embryo | 12hA | 0.83 | MC |
| SRR7265390 | embryo | 12hA | 1.00 | MC |
| SRR7265392 | embryo | 12hN | 0.58 | MC |
| SRR7265395 | embryo | 24hA | 0.46 | MC |
| SRR7265396 | embryo | 24hA | 0.64 | MC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 0.86 | MC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 0.37 | MC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 0.49 | MC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 0.57 | MC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 0.23 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 0.59 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 0.60 | MC |
| SRR6502100 | leaf | control | 0.53 | MC |
| SRR5856927 | leaf | control | 0.36 | MC |
| SRR5856929 | leaf | control | 0.63 | MC |
| SRR5856931 | leaf | salt | 0.16 | MC |
| SRR5856933 | leaf | control | 1.44 | MC |
| SRR5856934 | leaf | control | 0.87 | MC |
| SRR5856935 | leaf | control | 0.99 | MC |
| SRR5856936 | leaf | salt | 0.15 | MC |
| SRR5856937 | leaf | salt | 0.50 | MC |
| SRR5856938 | leaf | salt | 0.19 | MC |
| SRR6168973 | leaf | none (control) | 0.47 | MC |
| SRR6168976 | leaf | 0.5% Na2CO3 solution for 36h | 0.42 | MC |
| SRR4947496 | root | control | 0.63 | MC |
| SRR5110451 | panicle | Dawn + 14h | 0.26 | MC |
| SRR1633182 | panicle | WT | 1.50 | MC |
| SRR1633185 | panicle | WT | 1.22 | MC |
| SRR5278374 | pistil | "Balilla,S1" | 0.65 | MC |
| SRR5278375 | pistil | "Balilla,S1" | 0.87 | MC |
| SRR5278377 | pistil | "Balilla,S2" | 0.81 | MC |
| SRR5278378 | pistil | "Balilla,S3" | 0.96 | MC |
| SRR5278379 | pistil | "Balilla,S3" | 1.56 | MC |
| SRR5126147 | root | "mock,1_day" | 1.02 | MC |
| SRR5126148 | root | "mock,1_day" | 1.55 | MC |
| SRR5126149 | root | "mock,1_day" | 0.98 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 0.50 | MC |
| SRR5126153 | root | "mock,7_days" | 0.41 | MC |
| SRR5126157 | root | "mock,7_days" | 0.46 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 0.48 | MC |
| SRR5126167 | root | "mock,14_days" | 0.32 | MC |
| SRR5126169 | root | "mock,14_days" | 0.51 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 0.45 | MC |
| SRR3472897 | root | nontransgenic_rice_plant | 0.45 | MC |
| SRR4947478 | root | control | 0.90 | MC |
| SRR4947479 | root | control | 1.46 | MC |
| SRR4947481 | root | control | 1.11 | MC |
| SRR4947482 | root | Al | 0.80 | MC |
| SRR4947483 | root | Al | 1.02 | MC |
| SRR4947485 | root | Al | 1.06 | MC |
| SRR4947487 | root | control | 1.61 | MC |
| SRR4947489 | root | control | 0.53 | MC |
| SRR4947490 | root | Al | 1.57 | MC |
| SRR4947491 | root | Al | 2.12 | MC |
| SRR4947492 | root | Al | 1.65 | MC |
| SRR4947493 | root | Al | 0.96 | MC |
| SRR4947494 | root | control | 1.16 | MC |
| SRR4947497 | root | control | 0.56 | MC |
| SRR4947498 | root | Al | 2.11 | MC |
| SRR4947499 | root | Al | 1.88 | MC |
| SRR4947500 | root | Al | 0.65 | MC |
| SRR4947502 | root | control | 0.91 | MC |
| SRR4947503 | root | control | 2.26 | MC |
| SRR4947504 | root | control | 1.72 | MC |
| SRR4947505 | root | control | 0.66 | MC |
| SRR4947506 | root | Al | 0.91 | MC |
| SRR4947507 | root | Al | 1.31 | MC |
| SRR4947509 | root | Al | 1.16 | MC |
| SRR6502093 | root | 100 mM NaCl | 0.64 | MC |
| SRR6502094 | root | control | 0.69 | MC |
| SRR6502096 | root | control | 0.77 | MC |
| SRR6502103 | root | 100 mM NaCl | 1.15 | MC |
| SRR6502104 | root | 100 mM NaCl | 1.54 | MC |
| SRR6502105 | root | 100 mM NaCl | 1.08 | MC |
| SRR6502106 | root | control | 0.50 | MC |
| SRR6502108 | root | control | 0.94 | MC |
| SRR1740434 | root_differentiation_zone | wt | 2.19 | MC |
| SRR1740435 | root_differentiation_zone | wt | 2.60 | MC |
| SRR1740431 | root_elongation_zone | wt | 1.89 | MC |
| SRR1740432 | root_elongation_zone | wt | 0.98 | MC |
| SRR1740433 | root_elongation_zone | wt | 0.90 | MC |
| SRR2154082 | seedling | wt | 1.23 | MC |
| SRR2154083 | seedling | wt | 1.32 | MC |
| SRR3098741 | seedling | wt | 0.28 | MC |
| SRR3098742 | seedling | wt | 0.25 | MC |
| SRR3098743 | seedling | wt | 0.28 | MC |
| SRR1288363 | shoot | "none,3_days_post_infection" | 2.33 | MC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 5.38 | MC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 4.39 | MC |
| SRR4841741 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 1.65 | MC |
| SRR4841743 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 3.76 | MC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 0.50 | MC |
| SRR5796943 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 0.34 | MC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 0.50 | MC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 0.37 | MC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 0.44 | MC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 0.31 | MC |
| SRR5796959 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 0.56 | MC |
| SRR5052708 | shoot_apical_meristem | 0_days_after_shift | 1.22 | MC |
| SRR5052709 | shoot_apical_meristem | 0_days_after_shift | 0.84 | MC |
| SRR5052710 | shoot_apical_meristem | 0_days_after_shift | 1.04 | MC |
| SRR5052711 | shoot_apical_meristem | 4_days_after_shift | 1.28 | MC |
| SRR5052713 | shoot_apical_meristem | 4_days_after_shift | 1.64 | MC |
| SRR5052714 | shoot_apical_meristem | 4_days_after_shift | 1.44 | MC |
| SRR5052716 | shoot_apical_meristem | 8_days_after_shift | 1.09 | MC |
| SRR5052719 | shoot_apical_meristem | 8_days_after_shift | 1.81 | MC |
| SRR5052720 | shoot_apical_meristem | 8_days_after_shift | 1.40 | MC |
| SRR5052721 | shoot_apical_meristem | 12_days_after_shift | 1.46 | MC |
| SRR5052722 | shoot_apical_meristem | 12_days_after_shift | 0.92 | MC |
| SRR5052723 | shoot_apical_meristem | 12_days_after_shift | 1.31 | MC |
| SRR5052724 | shoot_apical_meristem | 0_days_after_shift | 1.43 | MC |
| SRR5052725 | shoot_apical_meristem | 0_days_after_shift | 1.64 | MC |
| SRR5052726 | shoot_apical_meristem | 0_days_after_shift | 1.89 | MC |
| SRR5052727 | shoot_apical_meristem | 4_days_after_shift | 1.97 | MC |
| SRR5052728 | shoot_apical_meristem | 4_days_after_shift | 2.75 | MC |
| SRR5052730 | shoot_apical_meristem | 4_days_after_shift | 1.69 | MC |
| SRR5052731 | shoot_apical_meristem | 8_days_after_shift | 1.62 | MC |
| SRR5052732 | shoot_apical_meristem | 8_days_after_shift | 1.36 | MC |
| SRR5052733 | shoot_apical_meristem | 8_days_after_shift | 2.07 | MC |
| SRR5052734 | shoot_apical_meristem | 12_days_after_shift | 1.66 | MC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 0.60 | MC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 0.86 | MC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 1.70 | MC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 1.45 | MC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 0.61 | MC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 1.19 | MC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 0.45 | MC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 1.10 | MC |