| SRR4457249 | 2nd_leaf | DAH4 | 0.89 | MC |
| SRR4457252 | 2nd_leaf | DAH12 | 0.36 | MC |
| SRR4457253 | 2nd_leaf | DAH12 | 0.33 | MC |
| SRR4457258 | 2nd_leaf | DAH28 | 0.32 | MC |
| SRR4457263 | 2nd_leaf | DAH36 | 0.75 | MC |
| SRR7265403 | coleoptile | 2dN | 0.45 | MC |
| SRR7265409 | coleoptile | 3dN | 0.44 | MC |
| SRR7265410 | coleoptile | 3dN | 0.36 | MC |
| SRR7265411 | coleoptile | 3dN | 0.47 | MC |
| SRR7265417 | coleoptile | 4dN | 0.62 | MC |
| SRR7265393 | embryo | 12hN | 0.41 | MC |
| SRR7265394 | embryo | 24hA | 0.68 | MC |
| SRR7265399 | embryo | 24hN | 0.52 | MC |
| SRR4457232 | flag_leaf | DAH4 | 0.19 | MC |
| SRR4457233 | flag_leaf | DAH4 | 0.35 | MC |
| SRR4457234 | flag_leaf | DAH12 | 0.40 | MC |
| SRR4457235 | flag_leaf | DAH12 | 0.40 | MC |
| SRR4457236 | flag_leaf | DAH12 | 0.85 | MC |
| SRR4457237 | flag_leaf | DAH20 | 0.34 | MC |
| SRR4457240 | flag_leaf | DAH28 | 0.54 | MC |
| SRR4457241 | flag_leaf | DAH28 | 0.61 | MC |
| SRR4457242 | flag_leaf | DAH28 | 0.40 | MC |
| SRR4457245 | flag_leaf | DAH36 | 0.29 | MC |
| SRR8060836 | leaf | wild_type | 0.90 | MC |
| SRR8060837 | leaf | wild_type | 0.31 | MC |
| SRR8240825 | leaf | wild_type | 0.47 | MC |
| SRR8240818 | leaf | wild_type | 0.28 | MC |
| SRR8240819 | leaf | wild_type | 0.47 | MC |
| SRR8240820 | leaf | wild_type | 0.88 | MC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 0.44 | MC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 0.43 | MC |
| SRR6417964 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 0.72 | MC |
| SRR6417966 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 0.61 | MC |
| SRR3209769 | leaf | Watered;Long_Day | 0.70 | MC |
| SRR3209770 | leaf | Watered;Long_Day | 0.47 | MC |
| SRR3209777 | leaf | Watered;Long_Day | 0.41 | MC |
| SRR3209779 | leaf | Watered;Short_Day | 0.37 | MC |
| SRR8611901 | leaf | Non-inoculated | 0.46 | MC |
| SRR8611902 | leaf | Non-inoculated | 0.21 | MC |
| SRR1213693 | leaf | wt | 0.26 | MC |
| SRR6502086 | leaf | 100 mM NaCl | 0.43 | MC |
| SRR6502098 | leaf | 100 mM NaCl | 0.78 | MC |
| SRR5856928 | leaf | control | 0.22 | MC |
| SRR5856930 | leaf | salt | 0.46 | MC |
| SRR5856931 | leaf | salt | 0.49 | MC |
| SRR5856932 | leaf | salt | 0.38 | MC |
| SRR5856934 | leaf | control | 0.31 | MC |
| SRR5856936 | leaf | salt | 0.84 | MC |
| SRR5856937 | leaf | salt | 0.97 | MC |
| SRR5856938 | leaf | salt | 0.33 | MC |
| SRR8582888 | panicle | AM | 0.31 | MC |
| SRR8582889 | panicle | AM | 0.17 | MC |
| SRR5110437 | panicle | Dawn + 7h | 0.62 | MC |
| SRR5110441 | panicle | Dawn + 10.5h | 0.86 | MC |
| SRR5110442 | panicle | Dawn + 10.5h | 0.90 | MC |
| SRR5110443 | panicle | Dawn + 10.5h | 0.36 | MC |
| SRR5110445 | panicle | Dusk | 0.84 | MC |
| SRR5110451 | panicle | Dawn + 14h | 0.29 | MC |
| SRR1213696 | endosprem | wt(milk grains) | 0.15 | MC |
| SRR5126149 | root | "mock,1_day" | 0.54 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 0.33 | MC |
| SRR5126157 | root | "mock,7_days" | 0.40 | MC |
| SRR5126167 | root | "mock,14_days" | 0.30 | MC |
| SRR3472897 | root | nontransgenic_rice_plant | 0.56 | MC |
| SRR3472900 | root | nontransgenic_rice_plant | 1.08 | MC |
| SRR1213694 | root | wt | 0.25 | MC |
| SRR1213695 | root | wt | 0.29 | MC |
| SRR4947485 | root | Al | 0.53 | MC |
| SRR6502106 | root | control | 0.40 | MC |
| SRR2154082 | seedling | wt | 0.39 | MC |
| SRR2154083 | seedling | wt | 0.49 | MC |
| SRR2154084 | seedling | wt | 0.37 | MC |
| SRR1288363 | shoot | "none,3_days_post_infection" | 2.61 | MC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 2.93 | MC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 8.07 | MC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 5.92 | MC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 5.46 | MC |
| SRR4841741 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 2.08 | MC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 2.96 | MC |
| SRR4841743 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 4.37 | MC |
| SRR3950244 | shoot | Drought_during_3_days;Fr13_inoculated | 1.59 | MC |
| SRR3950245 | shoot | Drought_during_3_days;Fr13_inoculated | 1.43 | MC |
| SRR3950246 | shoot | Drought_during_3_days;Fr13_inoculated | 1.11 | MC |
| SRR3950247 | shoot | No_DIS;Fr13_inoculated | 0.86 | MC |
| SRR3950248 | shoot | No_DIS;Fr13_inoculated | 1.22 | MC |
| SRR3950249 | shoot | No_DIS;Fr13_inoculated | 0.97 | MC |
| SRR3950250 | shoot | Drought_during_3_days;_mock_inoculated | 0.88 | MC |
| SRR3950251 | shoot | Drought_during_3_days;_mock_inoculated | 1.37 | MC |
| SRR3950252 | shoot | Drought_during_3_days;_mock_inoculated | 0.70 | MC |
| SRR3950253 | shoot | No_DIS;_mock_inoculated | 1.33 | MC |
| SRR3950254 | shoot | No_DIS;_mock_inoculated | 0.76 | MC |
| SRR3950255 | shoot | No_DIS;_mock_inoculated | 1.84 | MC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 0.57 | MC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 0.37 | MC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 0.50 | MC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 0.53 | MC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 0.58 | MC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 0.45 | MC |
| SRR7760292 | spikelet | control condition (29C) for 7 hrs | 0.59 | MC |
| SRR7760296 | spikelet | high temperature treatment (38C) for 7 hrs | 0.53 | MC |
| SRR7760297 | spikelet | control condition (29C) for 7 hrs | 1.39 | MC |
| SRR7760299 | spikelet | control condition (29C) for 7 hrs | 1.53 | MC |
| SRR7760301 | spikelet | high temperature treatment (38C) for 7 hrs | 0.31 | MC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 0.17 | MC |