| SRR5560729 | caryopsis | wild_type | 1.13 | MC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 1.21 | MC |
| SRR7265401 | coleoptile | 2dA | 0.33 | MC |
| SRR7265402 | coleoptile | 2dA | 0.68 | MC |
| SRR7265403 | coleoptile | 2dN | 0.59 | MC |
| SRR7265404 | coleoptile | 2dN | 0.75 | MC |
| SRR7265405 | coleoptile | 2dN | 0.86 | MC |
| SRR7265406 | coleoptile | 3dA | 0.69 | MC |
| SRR7265407 | coleoptile | 3dA | 0.80 | MC |
| SRR7265409 | coleoptile | 3dN | 0.52 | MC |
| SRR7265410 | coleoptile | 3dN | 0.85 | MC |
| SRR7265411 | coleoptile | 3dN | 0.90 | MC |
| SRR7265412 | coleoptile | 4dA | 0.46 | MC |
| SRR7265413 | coleoptile | 4dA | 1.18 | MC |
| SRR7265414 | coleoptile | 4dA | 0.79 | MC |
| SRR7265416 | coleoptile | 4dN | 0.51 | MC |
| SRR7265417 | coleoptile | 4dN | 0.67 | MC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 0.77 | MC |
| SRR4104637 | crown | "Zn_deficiency,8_days_of_treatment" | 0.69 | MC |
| SRR4104647 | crown | "Zn_Efficient,8_days_of_treatment" | 1.87 | MC |
| SRR4104646 | crown | "Zn_Efficient,8_days_of_treatment" | 0.36 | MC |
| SRR7265373 | embryo | dry seed 0 h | 0.29 | MC |
| SRR7265378 | embryo | 1hA | 0.31 | MC |
| SRR7265383 | embryo | 3hA | 0.45 | MC |
| SRR7265384 | embryo | 3hA | 0.45 | MC |
| SRR7265388 | embryo | 12hA | 1.71 | MC |
| SRR7265389 | embryo | 12hA | 1.10 | MC |
| SRR7265390 | embryo | 12hA | 0.42 | MC |
| SRR7265391 | embryo | 12hN | 1.13 | MC |
| SRR7265392 | embryo | 12hN | 1.01 | MC |
| SRR7265393 | embryo | 12hN | 0.87 | MC |
| SRR7265395 | embryo | 24hA | 0.76 | MC |
| SRR7265398 | embryo | 24hN | 1.22 | MC |
| SRR7265399 | embryo | 24hN | 1.17 | MC |
| SRR1213691 | flower | wt | 0.51 | MC |
| SRR8060835 | leaf | wild_type | 0.68 | MC |
| SRR8060837 | leaf | wild_type | 0.70 | MC |
| SRR8240825 | leaf | wild_type | 0.46 | MC |
| SRR504365 | leaf | wt | 0.41 | MC |
| SRR8611900 | leaf | Non-inoculated | 0.29 | MC |
| SRR8611902 | leaf | Non-inoculated | 0.67 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 0.44 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 0.35 | MC |
| SRR5856933 | leaf | control | 0.34 | MC |
| SRR6168973 | leaf | none (control) | 0.52 | MC |
| SRR5110430 | panicle | Dawn | 1.24 | MC |
| SRR5110434 | panicle | Dawn + 3.5h | 0.67 | MC |
| SRR5110435 | panicle | Dawn + 3.5h | 0.78 | MC |
| SRR5110438 | panicle | Dawn + 7h | 1.64 | MC |
| SRR5110441 | panicle | Dawn + 10.5h | 1.34 | MC |
| SRR5110451 | panicle | Dawn + 14h | 0.77 | MC |
| SRR5110453 | panicle | Dawn + 17.5h | 0.88 | MC |
| SRR5278375 | pistil | "Balilla,S1" | 0.28 | MC |
| SRR5126147 | root | "mock,1_day" | 1.56 | MC |
| SRR5126148 | root | "mock,1_day" | 2.13 | MC |
| SRR5126149 | root | "mock,1_day" | 1.00 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 1.42 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 1.26 | MC |
| SRR5126153 | root | "mock,7_days" | 1.39 | MC |
| SRR5126157 | root | "mock,7_days" | 1.01 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 2.08 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 3.79 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 2.45 | MC |
| SRR5126165 | root | "mock,14_days" | 1.99 | MC |
| SRR5126167 | root | "mock,14_days" | 1.51 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 2.28 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 2.83 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 2.73 | MC |
| SRR3472897 | root | nontransgenic_rice_plant | 0.60 | MC |
| SRR1213694 | root | wt | 0.37 | MC |
| SRR1213695 | root | wt | 0.49 | MC |
| SRR4947484 | root | Al | 0.59 | MC |
| SRR4947490 | root | Al | 1.44 | MC |
| SRR4947499 | root | Al | 0.82 | MC |
| SRR1740429 | root_meristematic_zone | wt | 0.98 | MC |
| SRR3098741 | seedling | wt | 0.19 | MC |
| SRR2857719 | seedling | drought_stress_0h | 0.68 | MC |
| SRR1944582 | seedling | "with_chilling_teatment_(4C,33h)" | 0.50 | MC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 4.37 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 9.97 | MC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 4.89 | MC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 7.94 | MC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 5.46 | MC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 1.04 | MC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 0.50 | MC |
| SRR5052709 | shoot_apical_meristem | 0_days_after_shift | 0.72 | MC |
| SRR5052720 | shoot_apical_meristem | 8_days_after_shift | 1.00 | MC |
| SRR5052722 | shoot_apical_meristem | 12_days_after_shift | 1.16 | MC |
| SRR5052723 | shoot_apical_meristem | 12_days_after_shift | 0.63 | MC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 0.34 | MC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 0.47 | MC |
| SRR7760293 | spikelet | control condition (29C) for 7 hrs | 0.66 | MC |
| SRR7760300 | spikelet | high temperature treatment (38C) for 7 hrs | 0.41 | MC |
| SRR7760301 | spikelet | high temperature treatment (38C) for 7 hrs | 0.33 | MC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 0.26 | MC |