| SRR3745125 | anther | wt | 5.74 | MC |
| SRR358796 | callus | wt | 3.13 | MC |
| SRR358797 | callus | wt | 2.27 | MC |
| SRR358798 | callus | wt | 2.60 | MC |
| SRR5560727 | caryopsis | wild_type | 1.80 | MC |
| SRR5560728 | caryopsis | wild_type | 1.54 | MC |
| SRR5560729 | caryopsis | wild_type | 3.94 | MC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 0.70 | MC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 0.57 | MC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 0.53 | MC |
| SRR7265411 | coleoptile | 3dN | 0.46 | MC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 1.09 | MC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 2.37 | MC |
| SRR7265381 | embryo | 1hN | 0.44 | MC |
| SRR2338867 | endosprem | control | 0.70 | MC |
| SRR1213690 | flower | wt(flower buds) | 1.86 | MC |
| SRR1213691 | flower | wt | 3.13 | MC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 0.52 | MC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 0.26 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 0.31 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 0.45 | MC |
| SRR5856927 | leaf | control | 0.42 | MC |
| SRR5856928 | leaf | control | 0.32 | MC |
| SRR5856929 | leaf | control | 0.49 | MC |
| SRR5856930 | leaf | salt | 0.23 | MC |
| SRR5856931 | leaf | salt | 0.27 | MC |
| SRR5856932 | leaf | salt | 0.25 | MC |
| SRR5856933 | leaf | control | 0.27 | MC |
| SRR5856934 | leaf | control | 0.53 | MC |
| SRR5856935 | leaf | control | 0.45 | MC |
| SRR5856936 | leaf | salt | 0.45 | MC |
| SRR5856937 | leaf | salt | 0.44 | MC |
| SRR5856938 | leaf | salt | 0.21 | MC |
| SRR6168974 | leaf | none (control) | 0.34 | MC |
| SRR1213696 | endosprem | wt(milk grains) | 1.58 | MC |
| SRR1633182 | panicle | WT | 2.05 | MC |
| SRR1633185 | panicle | WT | 2.89 | MC |
| SRR5278378 | pistil | "Balilla,S3" | 1.19 | MC |
| SRR5126147 | root | "mock,1_day" | 1.05 | MC |
| SRR5126148 | root | "mock,1_day" | 2.24 | MC |
| SRR5126149 | root | "mock,1_day" | 0.47 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 0.79 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 1.86 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 2.15 | MC |
| SRR5126153 | root | "mock,7_days" | 0.87 | MC |
| SRR5126155 | root | "mock,7_days" | 0.68 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 1.55 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 1.62 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 1.77 | MC |
| SRR5126165 | root | "mock,14_days" | 0.54 | MC |
| SRR5126167 | root | "mock,14_days" | 0.84 | MC |
| SRR5126169 | root | "mock,14_days" | 1.57 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 0.92 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 1.36 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 1.17 | MC |
| SRR3472897 | root | nontransgenic_rice_plant | 0.60 | MC |
| SRR3472900 | root | nontransgenic_rice_plant | 1.30 | MC |
| SRR6502092 | root | 100 mM NaCl | 0.95 | MC |
| SRR6502103 | root | 100 mM NaCl | 1.55 | MC |
| SRR6502104 | root | 100 mM NaCl | 1.81 | MC |
| SRR6502105 | root | 100 mM NaCl | 1.79 | MC |
| SRR6502107 | root | control | 1.16 | MC |
| SRR6502108 | root | control | 1.44 | MC |
| SRR1740436 | root_differentiation_zone | wt | 0.24 | MC |
| SRR1740432 | root_elongation_zone | wt | 1.75 | MC |
| SRR1740433 | root_elongation_zone | wt | 0.57 | MC |
| SRR1740430 | root_meristematic_zone | wt | 1.18 | MC |
| SRR2154086 | seedling | wt | 0.92 | MC |
| SRR2154087 | seedling | wt | 0.50 | MC |
| SRR2857719 | seedling | drought_stress_0h | 0.45 | MC |
| SRR2857720 | seedling | drought_stress_1h | 0.51 | MC |
| SRR1288363 | shoot | "none,3_days_post_infection" | 2.19 | MC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 3.12 | MC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 5.37 | MC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 3.89 | MC |
| SRR4841741 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 1.92 | MC |
| SRR3950246 | shoot | Drought_during_3_days;Fr13_inoculated | 0.28 | MC |
| SRR5052708 | shoot_apical_meristem | 0_days_after_shift | 5.17 | MC |
| SRR5052709 | shoot_apical_meristem | 0_days_after_shift | 5.59 | MC |
| SRR5052710 | shoot_apical_meristem | 0_days_after_shift | 6.41 | MC |
| SRR5052711 | shoot_apical_meristem | 4_days_after_shift | 3.66 | MC |
| SRR5052713 | shoot_apical_meristem | 4_days_after_shift | 5.25 | MC |
| SRR5052714 | shoot_apical_meristem | 4_days_after_shift | 7.28 | MC |
| SRR5052716 | shoot_apical_meristem | 8_days_after_shift | 4.11 | MC |
| SRR5052719 | shoot_apical_meristem | 8_days_after_shift | 6.46 | MC |
| SRR5052720 | shoot_apical_meristem | 8_days_after_shift | 4.55 | MC |
| SRR5052721 | shoot_apical_meristem | 12_days_after_shift | 4.16 | MC |
| SRR5052722 | shoot_apical_meristem | 12_days_after_shift | 6.87 | MC |
| SRR5052723 | shoot_apical_meristem | 12_days_after_shift | 5.77 | MC |
| SRR5052724 | shoot_apical_meristem | 0_days_after_shift | 7.21 | MC |
| SRR5052725 | shoot_apical_meristem | 0_days_after_shift | 5.17 | MC |
| SRR5052726 | shoot_apical_meristem | 0_days_after_shift | 5.05 | MC |
| SRR5052727 | shoot_apical_meristem | 4_days_after_shift | 6.45 | MC |
| SRR5052728 | shoot_apical_meristem | 4_days_after_shift | 6.30 | MC |
| SRR5052730 | shoot_apical_meristem | 4_days_after_shift | 4.98 | MC |
| SRR5052731 | shoot_apical_meristem | 8_days_after_shift | 6.56 | MC |
| SRR5052732 | shoot_apical_meristem | 8_days_after_shift | 6.51 | MC |
| SRR5052733 | shoot_apical_meristem | 8_days_after_shift | 3.89 | MC |
| SRR5052734 | shoot_apical_meristem | 12_days_after_shift | 4.41 | MC |
| SRR5052735 | shoot_apical_meristem | 12_days_after_shift | 5.62 | MC |
| SRR1617550 | shoot_apical_meristem | no collect | 3.23 | MC |
| SRR1617553 | shoot_apical_meristem | no collect | 2.47 | MC |
| SRR1617554 | shoot_apical_meristem | no collect | 3.36 | MC |
| SRR1617556 | shoot_apical_meristem | no collect | 1.21 | MC |
| SRR1617557 | shoot_apical_meristem | no collect | 0.93 | MC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 0.61 | MC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 1.66 | MC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 1.65 | MC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 2.10 | MC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 1.48 | MC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 1.14 | MC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 1.08 | MC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 0.58 | MC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 0.54 | MC |