| SRR3129125 | spikelet | Wild_type_9522_S5 | 1.71 | MC |
| SRR6168982 | leaf | 0.5% Na2CO3 solution for 36h | 0.30 | MC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 0.52 | MC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 0.83 | MC |
| SRR5110439 | panicle | Dawn + 7h | 2.26 | MC |
| SRR5110435 | panicle | Dawn + 3.5h | 1.40 | MC |
| SRR5110434 | panicle | Dawn + 3.5h | 1.21 | MC |
| SRR5110436 | panicle | Dawn + 3.5h | 2.65 | MC |
| SRR5110431 | panicle | Dawn | 1.32 | MC |
| SRR5110430 | panicle | Dawn | 1.76 | MC |
| SRR5110433 | panicle | Dawn + 3.5h | 2.97 | MC |
| SRR5110432 | panicle | Dawn | 2.74 | MC |
| SRR4104637 | crown | "Zn_deficiency,8_days_of_treatment" | 1.48 | MC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 0.62 | MC |
| SRR4104638 | crown | "Zn_deficiency,8_days_of_treatment" | 3.06 | MC |
| SRR1740435 | root_differentiation_zone | wt | 0.71 | MC |
| SRR3950248 | shoot | No_DIS;Fr13_inoculated | 0.26 | MC |
| SRR3950245 | shoot | Drought_during_3_days;Fr13_inoculated | 0.51 | MC |
| SRR3950246 | shoot | Drought_during_3_days;Fr13_inoculated | 0.60 | MC |
| SRR3950247 | shoot | No_DIS;Fr13_inoculated | 0.17 | MC |
| SRR4947500 | root | Al | 1.09 | MC |
| SRR4947501 | root | Al | 2.12 | MC |
| SRR3098741 | seedling | wt | 0.19 | MC |
| SRR5126153 | root | "mock,7_days" | 0.91 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 0.90 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 1.29 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 1.64 | MC |
| SRR5126157 | root | "mock,7_days" | 0.66 | MC |
| SRR5126155 | root | "mock,7_days" | 3.29 | MC |
| SRR7265403 | coleoptile | 2dN | 2.45 | MC |
| SRR7265402 | coleoptile | 2dA | 3.42 | MC |
| SRR7265401 | coleoptile | 2dA | 3.16 | MC |
| SRR7265400 | coleoptile | 2dA | 3.03 | MC |
| SRR7265407 | coleoptile | 3dA | 0.48 | MC |
| SRR7265405 | coleoptile | 2dN | 1.38 | MC |
| SRR7265404 | coleoptile | 2dN | 1.89 | MC |
| SRR1952792 | leaf | 48_hrs_after_inoculation_with_L8 | 0.32 | MC |
| SRR5110440 | panicle | Dawn + 7h | 3.29 | MC |
| SRR5110441 | panicle | Dawn + 10.5h | 2.65 | MC |
| SRR5110448 | panicle | Dusk | 5.08 | MC |
| SRR5110449 | panicle | Dawn + 14h | 2.24 | MC |
| SRR4947478 | root | control | 0.57 | MC |
| SRR358798 | callus | wt | 2.16 | MC |
| SRR358796 | callus | wt | 2.33 | MC |
| SRR358797 | callus | wt | 3.78 | MC |
| SRR358795 | callus | wt | 1.80 | MC |
| SRR358793 | seedling | wt | 0.49 | MC |
| SRR5278377 | pistil | "Balilla,S2" | 0.33 | MC |
| SRR5278378 | pistil | "Balilla,S3" | 0.39 | MC |
| SRR4947498 | root | Al | 0.52 | MC |
| SRR4947492 | root | Al | 0.66 | MC |
| SRR4947493 | root | Al | 0.48 | MC |
| SRR4947491 | root | Al | 1.03 | MC |
| SRR4947496 | root | control | 0.89 | MC |
| SRR4947497 | root | control | 2.23 | MC |
| SRR4947495 | root | control | 1.19 | MC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 0.82 | MC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 0.96 | MC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 0.49 | MC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 0.75 | MC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 0.73 | MC |
| SRR5052722 | shoot_apical_meristem | 12_days_after_shift | 0.88 | MC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 0.59 | MC |
| SRR5126169 | root | "mock,14_days" | 1.81 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 0.34 | MC |
| SRR5126167 | root | "mock,14_days" | 0.43 | MC |
| SRR4104646 | crown | "Zn_Efficient,8_days_of_treatment" | 1.61 | MC |
| SRR4104647 | crown | "Zn_Efficient,8_days_of_treatment" | 2.19 | MC |
| SRR4104644 | crown | "Zn_Efficient,8_days_of_treatment" | 2.46 | MC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 2.18 | MC |
| SRR4104643 | crown | "Zn_Efficient,8_days_of_treatment" | 1.19 | MC |
| SRR4104640 | crown | "Zn_deficiency,8_days_of_treatment" | 2.56 | MC |
| SRR4104641 | crown | "Zn_deficiency,8_days_of_treatment" | 2.99 | MC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 4.01 | MC |
| SRR8611900 | leaf | Non-inoculated | 0.51 | MC |
| SRR7265384 | embryo | 3hA | 2.73 | MC |
| SRR7265385 | embryo | 3hN | 3.91 | MC |
| SRR7265386 | embryo | 3hN | 3.10 | MC |
| SRR7265380 | embryo | 1hN | 3.00 | MC |
| SRR7265382 | embryo | 3hA | 3.31 | MC |
| SRR7265383 | embryo | 3hA | 2.50 | MC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 0.30 | MC |
| SRR6168975 | leaf | none (control) | 0.33 | MC |
| SRR7760292 | spikelet | control condition (29C) for 7 hrs | 2.02 | MC |
| SRR6168978 | leaf | 0.5% Na2CO3 solution for 36h | 0.81 | MC |
| SRR7760291 | spikelet | control condition (29C) for 7 hrs | 2.16 | MC |
| SRR7760294 | spikelet | high temperature treatment (38C) for 7 hrs | 1.19 | MC |
| SRR7760295 | spikelet | high temperature treatment (38C) for 7 hrs | 1.95 | MC |
| SRR7760298 | spikelet | control condition (29C) for 7 hrs | 2.27 | MC |
| SRR7760299 | spikelet | control condition (29C) for 7 hrs | 1.17 | MC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 0.51 | MC |
| SRR4841741 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 1.87 | MC |
| SRR2154083 | seedling | wt | 2.13 | MC |
| SRR2154082 | seedling | wt | 0.46 | MC |
| SRR2154084 | seedling | wt | 0.97 | MC |
| SRR1617559 | shoot_apical_meristem | no collect | 1.18 | MC |
| SRR1617550 | shoot_apical_meristem | no collect | 1.10 | MC |
| SRR1617557 | shoot_apical_meristem | no collect | 0.86 | MC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.43 | MC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.55 | MC |
| SRR5110459 | panicle | Dawn + 21h | 3.05 | MC |
| SRR5110458 | panicle | Dawn + 21h | 1.18 | MC |
| SRR5110453 | panicle | Dawn + 17.5h | 1.89 | MC |
| SRR5110452 | panicle | Dawn + 14h | 1.42 | MC |
| SRR5110451 | panicle | Dawn + 14h | 3.58 | MC |
| SRR5110450 | panicle | Dawn + 14h | 1.28 | MC |
| SRR5110457 | panicle | Dawn + 21h | 2.33 | MC |
| SRR5110456 | panicle | Dawn + 17.5h | 3.49 | MC |
| SRR5110455 | panicle | Dawn + 17.5h | 2.79 | MC |
| SRR5110454 | panicle | Dawn + 17.5h | 2.43 | MC |
| SRR7265375 | embryo | dry seed 0 h | 1.45 | MC |
| SRR7265377 | embryo | 1hA | 3.58 | MC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 4.74 | MC |
| SRR8611902 | leaf | Non-inoculated | 0.43 | MC |
| SRR8611901 | leaf | Non-inoculated | 0.32 | MC |
| SRR1213697 | endosprem | wt(mature seeds) | 1.57 | MC |
| SRR1213696 | endosprem | wt(milk grains) | 0.31 | MC |
| SRR1213691 | flower | wt | 1.41 | MC |
| SRR1213690 | flower | wt(flower buds) | 0.83 | MC |
| SRR1213693 | leaf | wt | 0.38 | MC |
| SRR7760293 | spikelet | control condition (29C) for 7 hrs | 0.65 | MC |
| SRR7760296 | spikelet | high temperature treatment (38C) for 7 hrs | 1.06 | MC |
| SRR7760297 | spikelet | control condition (29C) for 7 hrs | 2.57 | MC |
| SRR4947489 | root | control | 0.80 | MC |
| SRR4947488 | root | control | 0.74 | MC |
| SRR4947485 | root | Al | 0.55 | MC |
| SRR4947484 | root | Al | 0.66 | MC |
| SRR4947487 | root | control | 0.61 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 0.46 | MC |
| SRR6502096 | root | control | 0.40 | MC |
| SRR7265392 | embryo | 12hN | 3.41 | MC |
| SRR7265391 | embryo | 12hN | 4.22 | MC |
| SRR7265397 | embryo | 24hN | 4.94 | MC |
| SRR7265396 | embryo | 24hA | 3.49 | MC |
| SRR7265395 | embryo | 24hA | 3.72 | MC |
| SRR7265394 | embryo | 24hA | 4.32 | MC |
| SRR7265399 | embryo | 24hN | 3.05 | MC |
| SRR7265398 | embryo | 24hN | 3.51 | MC |
| SRR5110460 | panicle | Dawn + 21h | 1.57 | MC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 0.44 | MC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 0.50 | MC |
| SRR5560729 | caryopsis | wild_type | 0.53 | MC |
| SRR6168973 | leaf | none (control) | 0.49 | MC |
| SRR6168974 | leaf | none (control) | 1.35 | MC |
| SRR6168977 | leaf | 0.5% Na2CO3 solution for 36h | 0.62 | MC |
| SRR1740434 | root_differentiation_zone | wt | 3.28 | MC |
| SRR1633182 | panicle | WT | 0.30 | MC |
| SRR8060835 | leaf | wild_type | 0.45 | MC |
| SRR8060836 | leaf | wild_type | 0.59 | MC |
| SRR8060837 | leaf | wild_type | 0.43 | MC |
| SRR5110429 | panicle | Dawn | 2.05 | MC |
| SRR7760300 | spikelet | high temperature treatment (38C) for 7 hrs | 1.43 | MC |
| SRR7760301 | spikelet | high temperature treatment (38C) for 7 hrs | 1.61 | MC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 1.70 | MC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 6.03 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 8.12 | MC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 1.62 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 0.51 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 0.29 | MC |
| SRR5126149 | root | "mock,1_day" | 4.40 | MC |
| SRR5856938 | leaf | salt | 0.15 | MC |
| SRR5126147 | root | "mock,1_day" | 2.46 | MC |
| SRR7265414 | coleoptile | 4dA | 0.73 | MC |
| SRR7265411 | coleoptile | 3dN | 0.32 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 0.25 | MC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.33 | MC |
| SRR1952807 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.48 | MC |