| SRR358798 | callus | wt | 1.32 | MC |
| SRR5560727 | caryopsis | wild_type | 0.73 | MC |
| SRR5560728 | caryopsis | wild_type | 1.04 | MC |
| SRR5560729 | caryopsis | wild_type | 0.90 | MC |
| SRR2338868 | endosprem | high_temperature | 0.79 | MC |
| SRR2338869 | endosprem | high_temperature | 0.93 | MC |
| SRR1213690 | flower | wt(flower buds) | 0.60 | MC |
| SRR1213691 | flower | wt | 0.48 | MC |
| SRR2922624 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 0.89 | MC |
| SRR1952780 | leaf | 48_hrs_after_inoculation_with_BLS256 | 0.43 | MC |
| SRR1952783 | leaf | 48_hrs_after_inoculation_with_BLS279 | 0.55 | MC |
| SRR1952787 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.48 | MC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.60 | MC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.36 | MC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.30 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 0.60 | MC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 0.69 | MC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.60 | MC |
| SRR504365 | leaf | wt | 0.39 | MC |
| SRR8611900 | leaf | Non-inoculated | 0.71 | MC |
| SRR8611901 | leaf | Non-inoculated | 0.63 | MC |
| SRR8611902 | leaf | Non-inoculated | 1.25 | MC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 0.24 | MC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 0.30 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 0.81 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 0.65 | MC |
| SRR1213692 | leaf | wt | 0.67 | MC |
| SRR1213693 | leaf | wt | 0.96 | MC |
| SRR6502086 | leaf | 100 mM NaCl | 0.38 | MC |
| SRR6502099 | leaf | 100 mM NaCl | 0.36 | MC |
| SRR6168973 | leaf | none (control) | 0.80 | MC |
| SRR6168977 | leaf | 0.5% Na2CO3 solution for 36h | 0.32 | MC |
| SRR6168979 | leaf | none (control) | 0.24 | MC |
| SRR8582891 | panicle | PM | 0.48 | MC |
| SRR4947496 | root | control | 1.33 | MC |
| SRR1213697 | endosprem | wt(mature seeds) | 0.40 | MC |
| SRR1633182 | panicle | WT | 3.09 | MC |
| SRR1633185 | panicle | WT | 2.91 | MC |
| SRR5278378 | pistil | "Balilla,S3" | 0.55 | MC |
| SRR5278379 | pistil | "Balilla,S3" | 0.83 | MC |
| SRR5126147 | root | "mock,1_day" | 0.45 | MC |
| SRR5126148 | root | "mock,1_day" | 0.90 | MC |
| SRR5126149 | root | "mock,1_day" | 0.93 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 0.64 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 0.87 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 0.41 | MC |
| SRR5126153 | root | "mock,7_days" | 0.53 | MC |
| SRR5126155 | root | "mock,7_days" | 0.67 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 0.45 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 0.48 | MC |
| SRR5126165 | root | "mock,14_days" | 0.61 | MC |
| SRR5126167 | root | "mock,14_days" | 0.42 | MC |
| SRR5126169 | root | "mock,14_days" | 0.29 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 0.44 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 1.21 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 0.62 | MC |
| SRR1213694 | root | wt | 0.26 | MC |
| SRR1213695 | root | wt | 0.72 | MC |
| SRR4947480 | root | control | 1.18 | MC |
| SRR4947481 | root | control | 0.94 | MC |
| SRR4947484 | root | Al | 0.79 | MC |
| SRR4947485 | root | Al | 0.90 | MC |
| SRR4947488 | root | control | 1.24 | MC |
| SRR4947492 | root | Al | 0.64 | MC |
| SRR4947493 | root | Al | 1.06 | MC |
| SRR4947497 | root | control | 0.84 | MC |
| SRR4947500 | root | Al | 0.97 | MC |
| SRR4947504 | root | control | 1.84 | MC |
| SRR4947505 | root | control | 1.32 | MC |
| SRR4947508 | root | Al | 1.40 | MC |
| SRR4947509 | root | Al | 1.01 | MC |
| SRR6502096 | root | control | 0.38 | MC |
| SRR6441554 | seedling | wild_type | 0.50 | MC |
| SRR2154086 | seedling | wt | 0.96 | MC |
| SRR2857720 | seedling | drought_stress_1h | 0.99 | MC |
| SRR1288363 | shoot | "none,3_days_post_infection" | 1.69 | MC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 2.84 | MC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 6.46 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 9.56 | MC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 10.18 | MC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 4.45 | MC |
| SRR4841741 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 1.79 | MC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 4.30 | MC |
| SRR4841743 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 3.56 | MC |
| SRR3950244 | shoot | Drought_during_3_days;Fr13_inoculated | 0.17 | MC |
| SRR3950247 | shoot | No_DIS;Fr13_inoculated | 0.25 | MC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 0.38 | MC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 0.34 | MC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 0.82 | MC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 1.13 | MC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 0.62 | MC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 0.60 | MC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 1.02 | MC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 1.13 | MC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 0.99 | MC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 0.67 | MC |