| SRR3745125 | anther | wt | 4.11 | MC |
| SRR3745127 | anther | wt | 4.15 | MC |
| SRR5560727 | caryopsis | wild_type | 0.23 | MC |
| SRR5560728 | caryopsis | wild_type | 0.28 | MC |
| SRR5560729 | caryopsis | wild_type | 0.39 | MC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 0.63 | MC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 0.45 | MC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 0.66 | MC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 0.50 | MC |
| SRR2338868 | endosprem | high_temperature | 0.88 | MC |
| SRR2338869 | endosprem | high_temperature | 1.33 | MC |
| SRR1213690 | flower | wt(flower buds) | 0.87 | MC |
| SRR1213691 | flower | wt | 0.82 | MC |
| SRR8240818 | leaf | wild_type | 0.25 | MC |
| SRR8240819 | leaf | wild_type | 0.28 | MC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 0.96 | MC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 0.49 | MC |
| SRR1952783 | leaf | 48_hrs_after_inoculation_with_BLS279 | 0.40 | MC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.36 | MC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.27 | MC |
| SRR1952794 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.41 | MC |
| SRR1952797 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 0.57 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 0.31 | MC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 0.53 | MC |
| SRR1761788 | leaf | "wild_type,drought,2" | 0.47 | MC |
| SRR1761529 | leaf | drought | 0.43 | MC |
| SRR6417964 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 0.67 | MC |
| SRR6417965 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 1.62 | MC |
| SRR6417966 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 0.70 | MC |
| SRR6417967 | leaf | H2O_control | 0.83 | MC |
| SRR3209769 | leaf | Watered;Long_Day | 0.21 | MC |
| SRR3209771 | leaf | Drought;Long_Day | 0.43 | MC |
| SRR3209772 | leaf | Drought;Long_Day | 0.67 | MC |
| SRR3209775 | leaf | Drought;Short_Day | 0.34 | MC |
| SRR3209776 | leaf | Drought;Short_Day | 0.65 | MC |
| SRR3209777 | leaf | Watered;Long_Day | 0.36 | MC |
| SRR3209778 | leaf | Drought;Long_Day | 0.90 | MC |
| SRR8611902 | leaf | Non-inoculated | 0.23 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 0.22 | MC |
| SRR1213693 | leaf | wt | 0.35 | MC |
| SRR6502085 | leaf | 100 mM NaCl | 0.40 | MC |
| SRR6502088 | leaf | control | 0.36 | MC |
| SRR6502089 | leaf | control | 0.45 | MC |
| SRR6502101 | leaf | control | 0.52 | MC |
| SRR8582888 | panicle | AM | 2.58 | MC |
| SRR8582890 | panicle | AM | 0.88 | MC |
| SRR8582893 | panicle | PM | 0.26 | MC |
| SRR1213696 | endosprem | wt(milk grains) | 0.51 | MC |
| SRR1633182 | panicle | WT | 0.32 | MC |
| SRR1633185 | panicle | WT | 0.54 | MC |
| SRR5278375 | pistil | "Balilla,S1" | 0.41 | MC |
| SRR5126147 | root | "mock,1_day" | 0.67 | MC |
| SRR5126148 | root | "mock,1_day" | 0.66 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 0.50 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 0.63 | MC |
| SRR5126167 | root | "mock,14_days" | 0.28 | MC |
| SRR1213695 | root | wt | 0.43 | MC |
| SRR4947493 | root | Al | 0.87 | MC |
| SRR4947504 | root | control | 0.91 | MC |
| SRR4947505 | root | control | 0.98 | MC |
| SRR4947509 | root | Al | 0.71 | MC |
| SRR6502091 | root | 100 mM NaCl | 0.47 | MC |
| SRR6502092 | root | 100 mM NaCl | 0.56 | MC |
| SRR6502093 | root | 100 mM NaCl | 0.62 | MC |
| SRR6502095 | root | control | 0.47 | MC |
| SRR6502103 | root | 100 mM NaCl | 0.41 | MC |
| SRR6502104 | root | 100 mM NaCl | 0.47 | MC |
| SRR6502105 | root | 100 mM NaCl | 0.46 | MC |
| SRR6502107 | root | control | 0.27 | MC |
| SRR2154087 | seedling | wt | 0.48 | MC |
| SRR3098741 | seedling | wt | 0.35 | MC |
| SRR3098743 | seedling | wt | 0.27 | MC |
| SRR1288363 | shoot | "none,3_days_post_infection" | 1.35 | MC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 2.55 | MC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 5.62 | MC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 6.65 | MC |
| SRR4841741 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 3.06 | MC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 4.47 | MC |
| SRR4841743 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 4.01 | MC |
| SRR5796941 | shoot | "Control,22C for 10 min" | 0.70 | MC |
| SRR5796943 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 0.28 | MC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 0.32 | MC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 0.41 | MC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 0.55 | MC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 0.48 | MC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 0.58 | MC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 0.60 | MC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 0.51 | MC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 0.62 | MC |
| SRR5796958 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 0.50 | MC |
| SRR5796959 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 0.71 | MC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 0.25 | MC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 0.32 | MC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 0.42 | MC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 0.55 | MC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 0.41 | MC |