| SRR3745125 | anther | wt | 1.03 | MC |
| SRR3745126 | anther | wt | 0.52 | MC |
| SRR5560728 | caryopsis | wild_type | 0.63 | MC |
| SRR5560729 | caryopsis | wild_type | 0.54 | MC |
| SRR4947495 | root | control | 0.58 | MC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 0.61 | MC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 0.99 | MC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 1.15 | MC |
| SRR2338866 | endosprem | control | 2.00 | MC |
| SRR2338867 | endosprem | control | 0.68 | MC |
| SRR2338869 | endosprem | high_temperature | 0.85 | MC |
| SRR1213691 | flower | wt | 0.50 | MC |
| SRR8240824 | leaf | wild_type | 0.30 | MC |
| SRR8240825 | leaf | wild_type | 0.24 | MC |
| SRR8240826 | leaf | wild_type | 0.22 | MC |
| SRR8240820 | leaf | wild_type | 0.32 | MC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 0.57 | MC |
| SRR1952780 | leaf | 48_hrs_after_inoculation_with_BLS256 | 0.62 | MC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 0.38 | MC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.29 | MC |
| SRR1952794 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.71 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 0.27 | MC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 0.41 | MC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.43 | MC |
| SRR1952807 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.50 | MC |
| SRR1761789 | leaf | "wild_type,drought,2" | 0.74 | MC |
| SRR1761781 | leaf | "wild_type,drought,1" | 0.73 | MC |
| SRR1761529 | leaf | drought | 0.62 | MC |
| SRR6417964 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 0.54 | MC |
| SRR6417966 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 0.81 | MC |
| SRR3209770 | leaf | Watered;Long_Day | 0.56 | MC |
| SRR3209771 | leaf | Drought;Long_Day | 0.70 | MC |
| SRR3209772 | leaf | Drought;Long_Day | 1.16 | MC |
| SRR3209774 | leaf | Watered;Short_Day | 0.25 | MC |
| SRR3209775 | leaf | Drought;Short_Day | 0.73 | MC |
| SRR3209776 | leaf | Drought;Short_Day | 0.69 | MC |
| SRR3209778 | leaf | Drought;Long_Day | 0.90 | MC |
| SRR3209779 | leaf | Watered;Short_Day | 0.29 | MC |
| SRR3209780 | leaf | Drought;Short_Day | 1.10 | MC |
| SRR8611901 | leaf | Non-inoculated | 0.21 | MC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 0.25 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 0.45 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 0.74 | MC |
| SRR6502085 | leaf | 100 mM NaCl | 0.48 | MC |
| SRR6502090 | leaf | control | 0.32 | MC |
| SRR6502098 | leaf | 100 mM NaCl | 0.70 | MC |
| SRR6502099 | leaf | 100 mM NaCl | 0.85 | MC |
| SRR6502101 | leaf | control | 0.37 | MC |
| SRR6053400 | leaf | Paclobutrazol (PB) | 1.12 | MC |
| SRR6168973 | leaf | none (control) | 0.71 | MC |
| SRR6168974 | leaf | none (control) | 0.39 | MC |
| SRR6168975 | leaf | none (control) | 0.64 | MC |
| SRR6168976 | leaf | 0.5% Na2CO3 solution for 36h | 0.87 | MC |
| SRR6168979 | leaf | none (control) | 0.25 | MC |
| SRR6168981 | leaf | none (control) | 0.51 | MC |
| SRR6168982 | leaf | 0.5% Na2CO3 solution for 36h | 0.44 | MC |
| SRR6168983 | leaf | 0.5% Na2CO3 solution for 36h | 0.31 | MC |
| SRR8582888 | panicle | AM | 0.84 | MC |
| SRR8582889 | panicle | AM | 1.31 | MC |
| SRR8582890 | panicle | AM | 0.65 | MC |
| SRR8582893 | panicle | PM | 0.32 | MC |
| SRR5110429 | panicle | Dawn | 0.99 | MC |
| SRR5110430 | panicle | Dawn | 1.59 | MC |
| SRR5110431 | panicle | Dawn | 0.82 | MC |
| SRR5110432 | panicle | Dawn | 1.16 | MC |
| SRR5110433 | panicle | Dawn + 3.5h | 0.90 | MC |
| SRR5110435 | panicle | Dawn + 3.5h | 0.63 | MC |
| SRR5110436 | panicle | Dawn + 3.5h | 0.67 | MC |
| SRR5110437 | panicle | Dawn + 7h | 0.96 | MC |
| SRR5110438 | panicle | Dawn + 7h | 0.81 | MC |
| SRR5110439 | panicle | Dawn + 7h | 1.51 | MC |
| SRR5110440 | panicle | Dawn + 7h | 1.17 | MC |
| SRR5110442 | panicle | Dawn + 10.5h | 1.11 | MC |
| SRR5110443 | panicle | Dawn + 10.5h | 1.05 | MC |
| SRR5110444 | panicle | Dawn + 10.5h | 1.49 | MC |
| SRR5110447 | panicle | Dusk | 0.77 | MC |
| SRR5110448 | panicle | Dusk | 0.69 | MC |
| SRR5110450 | panicle | Dawn + 14h | 0.91 | MC |
| SRR5110451 | panicle | Dawn + 14h | 1.20 | MC |
| SRR5110452 | panicle | Dawn + 14h | 0.51 | MC |
| SRR5110453 | panicle | Dawn + 17.5h | 1.19 | MC |
| SRR5110454 | panicle | Dawn + 17.5h | 1.17 | MC |
| SRR5110455 | panicle | Dawn + 17.5h | 0.53 | MC |
| SRR5110456 | panicle | Dawn + 17.5h | 1.26 | MC |
| SRR5110457 | panicle | Dawn + 21h | 1.49 | MC |
| SRR5110458 | panicle | Dawn + 21h | 0.74 | MC |
| SRR5110459 | panicle | Dawn + 21h | 1.84 | MC |
| SRR5110460 | panicle | Dawn + 21h | 1.27 | MC |
| SRR1213696 | endosprem | wt(milk grains) | 0.83 | MC |
| SRR5278379 | pistil | "Balilla,S3" | 0.41 | MC |
| SRR5126147 | root | "mock,1_day" | 0.61 | MC |
| SRR5126148 | root | "mock,1_day" | 0.84 | MC |
| SRR5126149 | root | "mock,1_day" | 0.50 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 0.41 | MC |
| SRR1213695 | root | wt | 0.42 | MC |
| SRR4947481 | root | control | 0.53 | MC |
| SRR4947482 | root | Al | 0.79 | MC |
| SRR4947483 | root | Al | 0.50 | MC |
| SRR4947489 | root | control | 0.81 | MC |
| SRR4947490 | root | Al | 1.03 | MC |
| SRR4947497 | root | control | 0.59 | MC |
| SRR4947498 | root | Al | 0.83 | MC |
| SRR4947502 | root | control | 1.18 | MC |
| SRR4947505 | root | control | 0.56 | MC |
| SRR4947506 | root | Al | 0.92 | MC |
| SRR6502104 | root | 100 mM NaCl | 0.70 | MC |
| SRR6502105 | root | 100 mM NaCl | 0.56 | MC |
| SRR1740435 | root_differentiation_zone | wt | 0.33 | MC |
| SRR1740436 | root_differentiation_zone | wt | 0.23 | MC |
| SRR1740431 | root_elongation_zone | wt | 0.53 | MC |
| SRR1740432 | root_elongation_zone | wt | 0.78 | MC |
| SRR1740433 | root_elongation_zone | wt | 0.34 | MC |
| SRR1740429 | root_meristematic_zone | wt | 0.37 | MC |
| SRR1740430 | root_meristematic_zone | wt | 0.59 | MC |
| SRR2154085 | seedling | wt | 0.38 | MC |
| SRR2154087 | seedling | wt | 0.68 | MC |
| SRR3098741 | seedling | wt | 0.54 | MC |
| SRR3098742 | seedling | wt | 0.24 | MC |
| SRR3098743 | seedling | wt | 0.32 | MC |
| SRR2857720 | seedling | drought_stress_1h | 0.48 | MC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 2.31 | MC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 4.41 | MC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 5.91 | MC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 6.37 | MC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 7.03 | MC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 3.72 | MC |
| SRR4841743 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 4.28 | MC |
| SRR3950244 | shoot | Drought_during_3_days;Fr13_inoculated | 0.20 | MC |
| SRR3950245 | shoot | Drought_during_3_days;Fr13_inoculated | 0.44 | MC |
| SRR3950246 | shoot | Drought_during_3_days;Fr13_inoculated | 0.37 | MC |
| SRR3950247 | shoot | No_DIS;Fr13_inoculated | 0.53 | MC |
| SRR3950248 | shoot | No_DIS;Fr13_inoculated | 0.31 | MC |
| SRR3950249 | shoot | No_DIS;Fr13_inoculated | 0.50 | MC |
| SRR3950251 | shoot | Drought_during_3_days;_mock_inoculated | 0.75 | MC |
| SRR3950252 | shoot | Drought_during_3_days;_mock_inoculated | 0.63 | MC |
| SRR3950253 | shoot | No_DIS;_mock_inoculated | 0.51 | MC |
| SRR3950254 | shoot | No_DIS;_mock_inoculated | 0.60 | MC |
| SRR3950255 | shoot | No_DIS;_mock_inoculated | 0.73 | MC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 0.51 | MC |
| SRR5796941 | shoot | "Control,22C for 10 min" | 0.62 | MC |
| SRR5796943 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 0.65 | MC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 0.50 | MC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 0.36 | MC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 0.48 | MC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 0.30 | MC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 0.42 | MC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 0.79 | MC |
| SRR5796958 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 0.80 | MC |
| SRR5796959 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 0.34 | MC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 0.35 | MC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 0.34 | MC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 0.38 | MC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 0.63 | MC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 0.55 | MC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 0.59 | MC |
| SRR7760292 | spikelet | control condition (29C) for 7 hrs | 0.46 | MC |
| SRR7760301 | spikelet | high temperature treatment (38C) for 7 hrs | 0.28 | MC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 0.13 | MC |