| SRR4457249 | 2nd_leaf | DAH4 | 1.14 | MC |
| SRR4457250 | 2nd_leaf | DAH4 | 1.11 | MC |
| SRR4457251 | 2nd_leaf | DAH4 | 0.91 | MC |
| SRR4457252 | 2nd_leaf | DAH12 | 0.50 | MC |
| SRR4457253 | 2nd_leaf | DAH12 | 0.62 | MC |
| SRR4457254 | 2nd_leaf | DAH12 | 0.58 | MC |
| SRR4457258 | 2nd_leaf | DAH28 | 0.23 | MC |
| SRR5560727 | caryopsis | wild_type | 0.89 | MC |
| SRR5560728 | caryopsis | wild_type | 0.78 | MC |
| SRR5560729 | caryopsis | wild_type | 0.96 | MC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 0.38 | MC |
| SRR4104637 | crown | "Zn_deficiency,8_days_of_treatment" | 0.40 | MC |
| SRR4104638 | crown | "Zn_deficiency,8_days_of_treatment" | 1.46 | MC |
| SRR4104647 | crown | "Zn_Efficient,8_days_of_treatment" | 1.12 | MC |
| SRR4104640 | crown | "Zn_deficiency,8_days_of_treatment" | 1.16 | MC |
| SRR4104641 | crown | "Zn_deficiency,8_days_of_treatment" | 0.74 | MC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 0.46 | MC |
| SRR4104643 | crown | "Zn_Efficient,8_days_of_treatment" | 0.49 | MC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 0.56 | MC |
| SRR4457231 | flag_leaf | DAH4 | 0.82 | MC |
| SRR4457232 | flag_leaf | DAH4 | 1.11 | MC |
| SRR4457233 | flag_leaf | DAH4 | 0.95 | MC |
| SRR4457234 | flag_leaf | DAH12 | 0.26 | MC |
| SRR4457235 | flag_leaf | DAH12 | 0.34 | MC |
| SRR4457236 | flag_leaf | DAH12 | 0.40 | MC |
| SRR1213690 | flower | wt(flower buds) | 2.14 | MC |
| SRR1213691 | flower | wt | 0.39 | MC |
| SRR8240824 | leaf | wild_type | 0.36 | MC |
| SRR8240825 | leaf | wild_type | 0.68 | MC |
| SRR8240826 | leaf | wild_type | 0.25 | MC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 0.35 | MC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 0.42 | MC |
| SRR1952796 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 0.60 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 0.18 | MC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.45 | MC |
| SRR1761788 | leaf | "wild_type,drought,2" | 1.63 | MC |
| SRR1761789 | leaf | "wild_type,drought,2" | 1.73 | MC |
| SRR1761790 | leaf | "wild_type,control,2" | 1.24 | MC |
| SRR1761791 | leaf | "wild_type,control,2" | 1.10 | MC |
| SRR1761780 | leaf | "wild_type,drought,1" | 1.63 | MC |
| SRR1761781 | leaf | "wild_type,drought,1" | 1.73 | MC |
| SRR1761782 | leaf | "wild_type,control,1" | 1.24 | MC |
| SRR1761783 | leaf | "wild_type,control,1" | 1.10 | MC |
| SRR1761528 | leaf | drought | 1.63 | MC |
| SRR1761529 | leaf | drought | 1.73 | MC |
| SRR1761530 | leaf | control | 1.24 | MC |
| SRR1761531 | leaf | control | 1.10 | MC |
| SRR3209769 | leaf | Watered;Long_Day | 0.26 | MC |
| SRR3209771 | leaf | Drought;Long_Day | 0.52 | MC |
| SRR3209772 | leaf | Drought;Long_Day | 0.81 | MC |
| SRR3209776 | leaf | Drought;Short_Day | 0.60 | MC |
| SRR3209777 | leaf | Watered;Long_Day | 1.09 | MC |
| SRR3209778 | leaf | Drought;Long_Day | 2.33 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 3.42 | MC |
| SRR6502085 | leaf | 100 mM NaCl | 1.58 | MC |
| SRR6502086 | leaf | 100 mM NaCl | 2.35 | MC |
| SRR6502087 | leaf | 100 mM NaCl | 1.74 | MC |
| SRR6502088 | leaf | control | 0.47 | MC |
| SRR6502090 | leaf | control | 0.61 | MC |
| SRR6502097 | leaf | 100 mM NaCl | 1.09 | MC |
| SRR6502098 | leaf | 100 mM NaCl | 1.52 | MC |
| SRR6502099 | leaf | 100 mM NaCl | 0.83 | MC |
| SRR6502100 | leaf | control | 0.34 | MC |
| SRR6502101 | leaf | control | 0.47 | MC |
| SRR6502102 | leaf | control | 0.78 | MC |
| SRR5856927 | leaf | control | 0.19 | MC |
| SRR5856929 | leaf | control | 0.46 | MC |
| SRR6168977 | leaf | 0.5% Na2CO3 solution for 36h | 0.72 | MC |
| SRR6168982 | leaf | 0.5% Na2CO3 solution for 36h | 0.35 | MC |
| SRR8582891 | panicle | PM | 1.05 | MC |
| SRR8582892 | panicle | PM | 0.78 | MC |
| SRR8582893 | panicle | PM | 0.64 | MC |
| SRR5110429 | panicle | Dawn | 0.76 | MC |
| SRR5110431 | panicle | Dawn | 0.81 | MC |
| SRR5110432 | panicle | Dawn | 1.96 | MC |
| SRR5110433 | panicle | Dawn + 3.5h | 0.78 | MC |
| SRR5110434 | panicle | Dawn + 3.5h | 0.72 | MC |
| SRR5110435 | panicle | Dawn + 3.5h | 0.48 | MC |
| SRR5110436 | panicle | Dawn + 3.5h | 1.24 | MC |
| SRR5110437 | panicle | Dawn + 7h | 2.79 | MC |
| SRR5110438 | panicle | Dawn + 7h | 2.22 | MC |
| SRR5110440 | panicle | Dawn + 7h | 3.06 | MC |
| SRR5110441 | panicle | Dawn + 10.5h | 2.54 | MC |
| SRR5110445 | panicle | Dusk | 2.89 | MC |
| SRR5110449 | panicle | Dawn + 14h | 1.81 | MC |
| SRR5110450 | panicle | Dawn + 14h | 3.82 | MC |
| SRR5110452 | panicle | Dawn + 14h | 5.42 | MC |
| SRR5110454 | panicle | Dawn + 17.5h | 2.11 | MC |
| SRR5110455 | panicle | Dawn + 17.5h | 3.27 | MC |
| SRR5110456 | panicle | Dawn + 17.5h | 4.60 | MC |
| SRR5110458 | panicle | Dawn + 21h | 0.62 | MC |
| SRR5110459 | panicle | Dawn + 21h | 1.76 | MC |
| SRR5110460 | panicle | Dawn + 21h | 1.57 | MC |
| SRR1213696 | endosprem | wt(milk grains) | 0.64 | MC |
| SRR5126147 | root | "mock,1_day" | 0.75 | MC |
| SRR5126148 | root | "mock,1_day" | 0.72 | MC |
| SRR5126149 | root | "mock,1_day" | 2.96 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 1.18 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 1.85 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 0.77 | MC |
| SRR5126153 | root | "mock,7_days" | 0.72 | MC |
| SRR5126155 | root | "mock,7_days" | 0.88 | MC |
| SRR5126157 | root | "mock,7_days" | 1.42 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 1.49 | MC |
| SRR5126165 | root | "mock,14_days" | 3.45 | MC |
| SRR5126167 | root | "mock,14_days" | 1.96 | MC |
| SRR5126169 | root | "mock,14_days" | 1.09 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 0.71 | MC |
| SRR3472897 | root | nontransgenic_rice_plant | 0.72 | MC |
| SRR3472900 | root | nontransgenic_rice_plant | 0.97 | MC |
| SRR1213694 | root | wt | 1.43 | MC |
| SRR4947482 | root | Al | 0.81 | MC |
| SRR4947483 | root | Al | 0.92 | MC |
| SRR4947491 | root | Al | 0.55 | MC |
| SRR4947499 | root | Al | 0.91 | MC |
| SRR4947501 | root | Al | 0.49 | MC |
| SRR4947502 | root | control | 0.81 | MC |
| SRR4947505 | root | control | 0.65 | MC |
| SRR4947506 | root | Al | 1.03 | MC |
| SRR4947509 | root | Al | 0.84 | MC |
| SRR6502091 | root | 100 mM NaCl | 0.53 | MC |
| SRR6502092 | root | 100 mM NaCl | 0.42 | MC |
| SRR6502093 | root | 100 mM NaCl | 0.45 | MC |
| SRR6502103 | root | 100 mM NaCl | 0.55 | MC |
| SRR6502105 | root | 100 mM NaCl | 0.68 | MC |
| SRR6441554 | seedling | wild_type | 0.22 | MC |
| SRR6441555 | seedling | wild_type | 0.43 | MC |
| SRR2154086 | seedling | wt | 3.17 | MC |
| SRR2154082 | seedling | wt | 1.39 | MC |
| SRR2154083 | seedling | wt | 1.48 | MC |
| SRR2154084 | seedling | wt | 0.50 | MC |
| SRR2154085 | seedling | wt | 1.53 | MC |
| SRR2154087 | seedling | wt | 2.00 | MC |
| SRR3098741 | seedling | wt | 0.18 | MC |
| SRR1944582 | seedling | "with_chilling_teatment_(4C,33h)" | 0.55 | MC |
| SRR1944583 | seedling | no_treatment | 0.61 | MC |
| SRR358791 | seedling | wt | 3.78 | MC |
| SRR358792 | seedling | wt | 3.25 | MC |
| SRR358793 | seedling | wt | 1.17 | MC |
| SRR358794 | seedling | wt | 1.19 | MC |
| SRR1288363 | shoot | "none,3_days_post_infection" | 2.46 | MC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 3.97 | MC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 3.99 | MC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 7.39 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 10.90 | MC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 9.96 | MC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 7.72 | MC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 6.57 | MC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 4.99 | MC |
| SRR4841743 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 6.76 | MC |
| SRR3950244 | shoot | Drought_during_3_days;Fr13_inoculated | 1.24 | MC |
| SRR3950247 | shoot | No_DIS;Fr13_inoculated | 1.03 | MC |
| SRR3950250 | shoot | Drought_during_3_days;_mock_inoculated | 0.79 | MC |
| SRR3950251 | shoot | Drought_during_3_days;_mock_inoculated | 2.54 | MC |
| SRR3950252 | shoot | Drought_during_3_days;_mock_inoculated | 2.78 | MC |
| SRR3950253 | shoot | No_DIS;_mock_inoculated | 0.97 | MC |
| SRR3950254 | shoot | No_DIS;_mock_inoculated | 4.05 | MC |
| SRR3950255 | shoot | No_DIS;_mock_inoculated | 4.35 | MC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 0.62 | MC |
| SRR5796941 | shoot | "Control,22C for 10 min" | 0.43 | MC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 0.96 | MC |
| SRR5796943 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 0.75 | MC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 0.79 | MC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 1.23 | MC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 1.36 | MC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 2.55 | MC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 0.67 | MC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 0.72 | MC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 0.49 | MC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 0.63 | MC |
| SRR5796954 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 0.38 | MC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 0.45 | MC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 0.39 | MC |
| SRR5796959 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 0.54 | MC |
| SRR1617553 | shoot_apical_meristem | no collect | 0.90 | MC |
| SRR1617554 | shoot_apical_meristem | no collect | 1.94 | MC |
| SRR1617556 | shoot_apical_meristem | no collect | 0.90 | MC |
| SRR1617557 | shoot_apical_meristem | no collect | 1.75 | MC |
| SRR1617558 | shoot_apical_meristem | no collect | 0.74 | MC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 3.55 | MC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 3.25 | MC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 2.78 | MC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 0.50 | MC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 0.44 | MC |
| SRR7760291 | spikelet | control condition (29C) for 7 hrs | 4.04 | MC |
| SRR7760292 | spikelet | control condition (29C) for 7 hrs | 2.75 | MC |
| SRR7760293 | spikelet | control condition (29C) for 7 hrs | 0.66 | MC |
| SRR7760294 | spikelet | high temperature treatment (38C) for 7 hrs | 0.67 | MC |
| SRR7760295 | spikelet | high temperature treatment (38C) for 7 hrs | 0.90 | MC |
| SRR7760296 | spikelet | high temperature treatment (38C) for 7 hrs | 0.59 | MC |
| SRR7760297 | spikelet | control condition (29C) for 7 hrs | 1.66 | MC |
| SRR7760298 | spikelet | control condition (29C) for 7 hrs | 1.69 | MC |
| SRR7760299 | spikelet | control condition (29C) for 7 hrs | 0.66 | MC |
| SRR7760300 | spikelet | high temperature treatment (38C) for 7 hrs | 0.26 | MC |
| SRR7760301 | spikelet | high temperature treatment (38C) for 7 hrs | 0.52 | MC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 0.36 | MC |