| SRR4457249 | 2nd_leaf | DAH4 | 1.61 | MC |
| SRR4457250 | 2nd_leaf | DAH4 | 2.20 | MC |
| SRR4457251 | 2nd_leaf | DAH4 | 2.13 | MC |
| SRR4457252 | 2nd_leaf | DAH12 | 2.71 | MC |
| SRR4457253 | 2nd_leaf | DAH12 | 2.06 | MC |
| SRR4457254 | 2nd_leaf | DAH12 | 2.59 | MC |
| SRR4457255 | 2nd_leaf | DAH20 | 2.80 | MC |
| SRR4457256 | 2nd_leaf | DAH20 | 2.49 | MC |
| SRR4457257 | 2nd_leaf | DAH20 | 2.59 | MC |
| SRR4457258 | 2nd_leaf | DAH28 | 3.71 | MC |
| SRR4457261 | 2nd_leaf | DAH36 | 0.88 | MC |
| SRR4457262 | 2nd_leaf | DAH36 | 1.65 | MC |
| SRR4457263 | 2nd_leaf | DAH36 | 2.03 | MC |
| SRR4457264 | 2nd_leaf | DAH44 | 5.43 | MC |
| SRR4457266 | 2nd_leaf | DAH44 | 4.19 | MC |
| SRR5560727 | caryopsis | wild_type | 0.41 | MC |
| SRR5560728 | caryopsis | wild_type | 2.82 | MC |
| SRR5560729 | caryopsis | wild_type | 3.45 | MC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 3.21 | MC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 2.62 | MC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 3.38 | MC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 2.12 | MC |
| SRR7265406 | coleoptile | 3dA | 3.48 | MC |
| SRR7265408 | coleoptile | 3dA | 1.89 | MC |
| SRR7265412 | coleoptile | 4dA | 0.83 | MC |
| SRR7265413 | coleoptile | 4dA | 3.42 | MC |
| SRR7265414 | coleoptile | 4dA | 2.36 | MC |
| SRR7265418 | coleoptile | 3dN1dA | 3.51 | MC |
| SRR7265419 | coleoptile | 3dN1dA | 4.12 | MC |
| SRR7265420 | coleoptile | 3dN1dA | 3.10 | MC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 0.78 | MC |
| SRR4104637 | crown | "Zn_deficiency,8_days_of_treatment" | 0.44 | MC |
| SRR4104638 | crown | "Zn_deficiency,8_days_of_treatment" | 1.02 | MC |
| SRR4104647 | crown | "Zn_Efficient,8_days_of_treatment" | 0.74 | MC |
| SRR4104640 | crown | "Zn_deficiency,8_days_of_treatment" | 1.99 | MC |
| SRR4104641 | crown | "Zn_deficiency,8_days_of_treatment" | 0.91 | MC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 0.95 | MC |
| SRR4104643 | crown | "Zn_Efficient,8_days_of_treatment" | 0.74 | MC |
| SRR4104644 | crown | "Zn_Efficient,8_days_of_treatment" | 0.87 | MC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 3.37 | MC |
| SRR4104646 | crown | "Zn_Efficient,8_days_of_treatment" | 1.77 | MC |
| SRR2338866 | endosprem | control | 2.84 | MC |
| SRR2338868 | endosprem | high_temperature | 1.81 | MC |
| SRR2338869 | endosprem | high_temperature | 2.90 | MC |
| SRR976168 | flag_leaf | wild_type | 0.47 | MC |
| SRR4457231 | flag_leaf | DAH4 | 2.95 | MC |
| SRR4457232 | flag_leaf | DAH4 | 2.19 | MC |
| SRR4457233 | flag_leaf | DAH4 | 2.87 | MC |
| SRR4457238 | flag_leaf | DAH20 | 3.98 | MC |
| SRR4457243 | flag_leaf | DAH36 | 2.11 | MC |
| SRR4457244 | flag_leaf | DAH36 | 1.28 | MC |
| SRR4457245 | flag_leaf | DAH36 | 1.71 | MC |
| SRR8060835 | leaf | wild_type | 0.99 | MC |
| SRR8060836 | leaf | wild_type | 1.37 | MC |
| SRR8060837 | leaf | wild_type | 1.55 | MC |
| SRR8240824 | leaf | wild_type | 0.56 | MC |
| SRR8240825 | leaf | wild_type | 0.54 | MC |
| SRR8240826 | leaf | wild_type | 0.70 | MC |
| SRR8240818 | leaf | wild_type | 0.41 | MC |
| SRR8240819 | leaf | wild_type | 0.94 | MC |
| SRR8240820 | leaf | wild_type | 0.68 | MC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 2.41 | MC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 2.43 | MC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 4.16 | MC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 2.76 | MC |
| SRR2922622 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 3.26 | MC |
| SRR2922623 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 1.32 | MC |
| SRR2922624 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 2.07 | MC |
| SRR1952778 | leaf | 48_hrs_after_inoculation_with_BLS256 | 1.71 | MC |
| SRR1952779 | leaf | 48_hrs_after_inoculation_with_BLS256 | 2.46 | MC |
| SRR1952780 | leaf | 48_hrs_after_inoculation_with_BLS256 | 3.03 | MC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 1.78 | MC |
| SRR1952782 | leaf | 48_hrs_after_inoculation_with_BLS279 | 2.15 | MC |
| SRR1952783 | leaf | 48_hrs_after_inoculation_with_BLS279 | 1.44 | MC |
| SRR1952784 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 5.53 | MC |
| SRR1952785 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 3.89 | MC |
| SRR1952786 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 2.40 | MC |
| SRR1952787 | leaf | 48_hrs_after_inoculation_with_B8_12 | 1.61 | MC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 1.68 | MC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 1.14 | MC |
| SRR1952790 | leaf | 48_hrs_after_inoculation_with_L8 | 2.73 | MC |
| SRR1952791 | leaf | 48_hrs_after_inoculation_with_L8 | 1.84 | MC |
| SRR1952792 | leaf | 48_hrs_after_inoculation_with_L8 | 1.35 | MC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 3.43 | MC |
| SRR1952794 | leaf | 48_hrs_after_inoculation_with_RS105 | 1.78 | MC |
| SRR1952795 | leaf | 48_hrs_after_inoculation_with_RS105 | 2.20 | MC |
| SRR1952796 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 3.96 | MC |
| SRR1952797 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 2.03 | MC |
| SRR1952798 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 2.71 | MC |
| SRR1952799 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 5.36 | MC |
| SRR1952800 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 2.25 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 2.24 | MC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 3.02 | MC |
| SRR1952803 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 4.15 | MC |
| SRR1952804 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 2.26 | MC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 3.43 | MC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 2.03 | MC |
| SRR1952807 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 2.89 | MC |
| SRR1952809 | leaf | 48_hrs_after_mock_inoculation | 5.39 | MC |
| SRR1952810 | leaf | 48_hrs_after_mock_inoculation | 3.79 | MC |
| SRR1761789 | leaf | "wild_type,drought,2" | 0.50 | MC |
| SRR1761790 | leaf | "wild_type,control,2" | 1.78 | MC |
| SRR1761791 | leaf | "wild_type,control,2" | 1.99 | MC |
| SRR1761781 | leaf | "wild_type,drought,1" | 0.50 | MC |
| SRR1761782 | leaf | "wild_type,control,1" | 1.78 | MC |
| SRR1761783 | leaf | "wild_type,control,1" | 1.99 | MC |
| SRR1761529 | leaf | drought | 0.50 | MC |
| SRR1761530 | leaf | control | 1.78 | MC |
| SRR1761531 | leaf | control | 1.99 | MC |
| SRR6417964 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 0.69 | MC |
| SRR6417965 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 0.47 | MC |
| SRR6417967 | leaf | H2O_control | 1.19 | MC |
| SRR6417968 | leaf | H2O_control | 0.42 | MC |
| SRR6417969 | leaf | H2O_control | 0.49 | MC |
| SRR3209772 | leaf | Drought;Long_Day | 0.53 | MC |
| SRR3209775 | leaf | Drought;Short_Day | 2.41 | MC |
| SRR3209776 | leaf | Drought;Short_Day | 0.86 | MC |
| SRR3209780 | leaf | Drought;Short_Day | 0.65 | MC |
| SRR8611900 | leaf | Non-inoculated | 0.65 | MC |
| SRR8611901 | leaf | Non-inoculated | 1.72 | MC |
| SRR8611902 | leaf | Non-inoculated | 0.30 | MC |
| SRR1213693 | leaf | wt | 1.62 | MC |
| SRR6502085 | leaf | 100 mM NaCl | 1.31 | MC |
| SRR6502086 | leaf | 100 mM NaCl | 0.95 | MC |
| SRR6502087 | leaf | 100 mM NaCl | 1.89 | MC |
| SRR6502088 | leaf | control | 4.18 | MC |
| SRR6502090 | leaf | control | 3.42 | MC |
| SRR6502097 | leaf | 100 mM NaCl | 2.53 | MC |
| SRR6502098 | leaf | 100 mM NaCl | 2.91 | MC |
| SRR6502100 | leaf | control | 3.26 | MC |
| SRR6502101 | leaf | control | 2.94 | MC |
| SRR6502102 | leaf | control | 3.87 | MC |
| SRR5856927 | leaf | control | 1.16 | MC |
| SRR5856928 | leaf | control | 1.21 | MC |
| SRR5856929 | leaf | control | 0.82 | MC |
| SRR5856930 | leaf | salt | 1.10 | MC |
| SRR5856931 | leaf | salt | 1.35 | MC |
| SRR5856933 | leaf | control | 2.36 | MC |
| SRR5856934 | leaf | control | 2.24 | MC |
| SRR5856935 | leaf | control | 2.44 | MC |
| SRR6053392 | leaf | ethanol solvent (untreated control) | 1.90 | MC |
| SRR6053395 | leaf | gibberellic acid (GA) | 4.65 | MC |
| SRR6053396 | leaf | gibberellic acid (GA) | 5.80 | MC |
| SRR6053397 | leaf | gibberellic acid (GA) | 2.26 | MC |
| SRR6053398 | leaf | Paclobutrazol (PB) | 4.93 | MC |
| SRR6053399 | leaf | Paclobutrazol (PB) | 1.09 | MC |
| SRR6053400 | leaf | Paclobutrazol (PB) | 1.95 | MC |
| SRR6168973 | leaf | none (control) | 0.83 | MC |
| SRR6168974 | leaf | none (control) | 1.26 | MC |
| SRR6168975 | leaf | none (control) | 0.52 | MC |
| SRR6168976 | leaf | 0.5% Na2CO3 solution for 36h | 4.04 | MC |
| SRR6168978 | leaf | 0.5% Na2CO3 solution for 36h | 4.57 | MC |
| SRR6168981 | leaf | none (control) | 0.97 | MC |
| SRR6168983 | leaf | 0.5% Na2CO3 solution for 36h | 0.31 | MC |
| SRR6168984 | leaf | 0.5% Na2CO3 solution for 36h | 0.50 | MC |
| SRR8582891 | panicle | PM | 4.86 | MC |
| SRR8582893 | panicle | PM | 2.21 | MC |
| SRR4947496 | root | control | 2.76 | MC |
| SRR5278374 | pistil | "Balilla,S1" | 0.63 | MC |
| SRR5278375 | pistil | "Balilla,S1" | 1.18 | MC |
| SRR5278376 | pistil | "Balilla,S2" | 2.01 | MC |
| SRR5278377 | pistil | "Balilla,S2" | 2.76 | MC |
| SRR5278378 | pistil | "Balilla,S3" | 6.68 | MC |
| SRR5278379 | pistil | "Balilla,S3" | 4.21 | MC |
| SRR5126148 | root | "mock,1_day" | 1.04 | MC |
| SRR5126149 | root | "mock,1_day" | 2.43 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 3.08 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 0.46 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 0.70 | MC |
| SRR5126153 | root | "mock,7_days" | 2.64 | MC |
| SRR5126155 | root | "mock,7_days" | 3.63 | MC |
| SRR5126157 | root | "mock,7_days" | 2.08 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 4.31 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 1.78 | MC |
| SRR5126165 | root | "mock,14_days" | 0.96 | MC |
| SRR5126167 | root | "mock,14_days" | 2.21 | MC |
| SRR5126169 | root | "mock,14_days" | 1.82 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 3.73 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 2.92 | MC |
| SRR3472900 | root | nontransgenic_rice_plant | 2.16 | MC |
| SRR1213694 | root | wt | 0.45 | MC |
| SRR1213695 | root | wt | 1.80 | MC |
| SRR4947478 | root | control | 3.79 | MC |
| SRR4947479 | root | control | 3.81 | MC |
| SRR4947480 | root | control | 4.29 | MC |
| SRR4947481 | root | control | 4.23 | MC |
| SRR4947484 | root | Al | 4.71 | MC |
| SRR4947485 | root | Al | 4.01 | MC |
| SRR4947487 | root | control | 3.96 | MC |
| SRR4947488 | root | control | 4.30 | MC |
| SRR4947489 | root | control | 3.44 | MC |
| SRR4947490 | root | Al | 1.10 | MC |
| SRR4947491 | root | Al | 4.96 | MC |
| SRR4947492 | root | Al | 5.30 | MC |
| SRR4947497 | root | control | 5.63 | MC |
| SRR4947498 | root | Al | 5.74 | MC |
| SRR4947500 | root | Al | 5.61 | MC |
| SRR4947505 | root | control | 4.96 | MC |
| SRR4947506 | root | Al | 3.30 | MC |
| SRR4947508 | root | Al | 4.84 | MC |
| SRR6502092 | root | 100 mM NaCl | 4.76 | MC |
| SRR6502094 | root | control | 4.93 | MC |
| SRR6502096 | root | control | 4.44 | MC |
| SRR1740434 | root_differentiation_zone | wt | 2.83 | MC |
| SRR1740435 | root_differentiation_zone | wt | 2.13 | MC |
| SRR1740436 | root_differentiation_zone | wt | 2.65 | MC |
| SRR6441554 | seedling | wild_type | 1.58 | MC |
| SRR6441555 | seedling | wild_type | 1.01 | MC |
| SRR3098741 | seedling | wt | 1.31 | MC |
| SRR3098742 | seedling | wt | 2.06 | MC |
| SRR3098743 | seedling | wt | 1.59 | MC |
| SRR2857721 | seedling | drought_stress_6h | 1.20 | MC |
| SRR1944583 | seedling | no_treatment | 2.92 | MC |
| SRR1288363 | shoot | "none,3_days_post_infection" | 1.65 | MC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 1.84 | MC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 2.90 | MC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 5.71 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 9.80 | MC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 7.33 | MC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 3.07 | MC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 5.16 | MC |
| SRR4841743 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 4.75 | MC |
| SRR3950246 | shoot | Drought_during_3_days;Fr13_inoculated | 0.80 | MC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 0.69 | MC |
| SRR5796941 | shoot | "Control,22C for 10 min" | 0.42 | MC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 1.27 | MC |
| SRR5796943 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 1.36 | MC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 0.49 | MC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 1.22 | MC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 1.20 | MC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 0.78 | MC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 2.07 | MC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 1.69 | MC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 1.12 | MC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 1.03 | MC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 0.87 | MC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 0.62 | MC |
| SRR5796954 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 0.95 | MC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 1.23 | MC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 1.78 | MC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 2.68 | MC |
| SRR5796958 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 1.13 | MC |
| SRR5796959 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 1.54 | MC |
| SRR1617549 | shoot_apical_meristem | no collect | 5.44 | MC |
| SRR1617550 | shoot_apical_meristem | no collect | 7.38 | MC |
| SRR1617556 | shoot_apical_meristem | no collect | 6.03 | MC |